Peter J Mucha

Peter J Mucha

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Peter J Mucha

Publications by authors named "Peter J Mucha"

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Metabolomic networks connect host-microbiome processes to human Clostridioides difficile infections.

J Clin Invest 2019 Aug 12;130:3792-3806. Epub 2019 Aug 12.

Center for Women's Infectious Disease Research, Division of Infectious Diseases, Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1172/JCI126905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715368PMC
August 2019

Map equation with metadata: Varying the role of attributes in community detection.

Phys Rev E 2019 Aug;100(2-1):022301

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1103/PhysRevE.100.022301DOI Listing
August 2019

Social clustering in epidemic spread on coevolving networks.

Phys Rev E 2019 Jun;99(6-1):062301

Department of Mathematics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1103/PhysRevE.99.062301DOI Listing
June 2019

Infectivity enhances prediction of viral cascades in Twitter.

PLoS One 2019 17;14(4):e0214453. Epub 2019 Apr 17.

Department of Mathematics, The University of North Carolina, Chapel Hill, NC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214453PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6469756PMC
April 2019

Assessing the robustness of cluster solutions obtained from sparse count matrices.

Psychol Methods 2019 Feb 11. Epub 2019 Feb 11.

Department of Mathematics, University of North Carolina at Chapel Hill.

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http://dx.doi.org/10.1037/met0000204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6689462PMC
February 2019

Functional classification of long non-coding RNAs by k-mer content.

Nat Genet 2018 10 17;50(10):1474-1482. Epub 2018 Sep 17.

Department of Pharmacology and Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1038/s41588-018-0207-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6262761PMC
October 2018

RIGID GRAPH COMPRESSION: MOTIF-BASED RIGIDITY ANALYSIS FOR DISORDERED FIBER NETWORKS.

Multiscale Model Simul 2018 21;16(3):1283-1304. Epub 2018 Aug 21.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, NC 27599.

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http://dx.doi.org/10.1137/17M1157271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6234004PMC
August 2018

Compressing Networks with Super Nodes.

Sci Rep 2018 Jul 18;8(1):10892. Epub 2018 Jul 18.

Carolina Center for Interdisciplinary Applied Mathematics, University of North Carolina at Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1038/s41598-018-29174-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052167PMC
July 2018

Care Coordination and Multispecialty Teams in the Care of Colorectal Cancer Patients.

Med Care 2018 05;56(5):430-435

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC.

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http://dx.doi.org/10.1097/MLR.0000000000000906DOI Listing
May 2018

Epidemic spreading in localized environments with recurrent mobility patterns.

Phys Rev E 2018 May;97(5-1):052302

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599-3250, USA.

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http://dx.doi.org/10.1103/PhysRevE.97.052302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6195814PMC
May 2018

NETWORK-ENSEMBLE COMPARISONS WITH STOCHASTIC REWIRING AND VON NEUMANN ENTROPY.

SIAM J Appl Math 2018 27;78(2):897-920. Epub 2018 Mar 27.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1137/17M1124218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181241PMC
March 2018

Evolutionary prisoner's dilemma games coevolving on adaptive networks.

J Complex Netw 2018 Feb 7;6(1):1-23. Epub 2017 Jul 7.

Department of Mathematics, University of North Carolina at Chapel Hill.

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http://dx.doi.org/10.1093/comnet/cnx018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931405PMC
February 2018

The scaling structure of the global road network.

R Soc Open Sci 2017 Oct 18;4(10):170590. Epub 2017 Oct 18.

Laboratory of Ecohydrology, École Polytechnique Fédérale Lausanne (EPFL), Lausanne CH-1015, Switzerland.

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http://dx.doi.org/10.1098/rsos.170590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5666254PMC
October 2017

Post-Processing Partitions to Identify Domains of Modularity Optimization.

Algorithms 2017 Sep 19;10(3). Epub 2017 Aug 19.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.3390/a10030093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5642987PMC
September 2017

Super-Resolution Community Detection for Layer-Aggregated Multilayer Networks.

Phys Rev X 2017 Jul-Sep;7(3). Epub 2017 Sep 26.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1103/PhysRevX.7.031056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5809009PMC
September 2017

Scientific Training in the Era of Big Data: A New Pedagogy for Graduate Education.

Big Data 2017 03 13;5(1):12-18. Epub 2017 Mar 13.

1 Renaissance Computing Institute (RENCI), University of North Carolina at Chapel Hill , Chapel Hill, North Carolina.

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http://dx.doi.org/10.1089/big.2016.0014DOI Listing
March 2017

EIGENVECTOR-BASED CENTRALITY MEASURES FOR TEMPORAL NETWORKS.

Multiscale Model Simul 2017 28;15(1):537-574. Epub 2017 Mar 28.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, NC 27599-3250, USA.

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http://dx.doi.org/10.1137/16M1066142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5643020PMC
March 2017

Transitivity reinforcement in the coevolving voter model.

Chaos 2016 Dec;26(12):123112

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1063/1.4972116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5848690PMC
December 2016

Network Structure and Biased Variance Estimation in Respondent Driven Sampling.

PLoS One 2015 17;10(12):e0145296. Epub 2015 Dec 17.

Department of Applied Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0145296PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682989PMC
July 2016

Enhanced Detectability of Community Structure in Multilayer Networks through Layer Aggregation.

Phys Rev Lett 2016 Jun 2;116(22):228301. Epub 2016 Jun 2.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1103/PhysRevLett.116.228301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5125641PMC
June 2016

Modeling of Virion Collisions in Cervicovaginal Mucus Reveals Limits on Agglutination as the Protective Mechanism of Secretory Immunoglobulin A.

PLoS One 2015 1;10(7):e0131351. Epub 2015 Jul 1.

Division of Molecular Pharmaceutics, Eshelman School of Pharmacy, University of North Carolina-Chapel Hill, 120 Mason Farm Road, Chapel Hill, NC, 27599-7362, United States of America; UNC/NCSU Joint Department of Biomedical Engineering, University of North Carolina-Chapel Hill, 120 Mason Farm Road, Chapel Hill, NC, 27599, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131351PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4488843PMC
April 2016

Clustering network layers with the strata multilayer stochastic block model.

IEEE Trans Netw Sci Eng 2016 Apr-Jun;3(2):95-105. Epub 2016 Mar 25.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill.

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http://dx.doi.org/10.1109/TNSE.2016.2537545DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5400296PMC
March 2016

Spatiotemporal patterns and trends of Indian monsoonal rainfall extremes.

Geophys Res Lett 2016 Feb;43(4):1710-1717

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, CB #3250, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1002/2016GL067841DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5125774PMC
February 2016

Network Analysis Reveals Sex- and Antibiotic Resistance-Associated Antivirulence Targets in Clinical Uropathogens.

ACS Infect Dis 2015 Nov 24;1(11):523-532. Epub 2015 Jul 24.

Center for Women's Infectious Diseases Research, Division of Infectious Diseases, and Department of Internal Medicine, Washington University in St. Louis, St. Louis, Missouri 63110, United States ; Center for Women's Infectious Diseases Research, Division of Infectious Diseases, and Department of Internal Medicine, Washington University in St. Louis, St. Louis, Missouri 63110, United States ; Center for Women's Infectious Diseases Research, Division of Infectious Diseases, and Department of Internal Medicine, Washington University in St. Louis, St. Louis, Missouri 63110, United States.

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http://dx.doi.org/10.1021/acsinfecdis.5b00022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788272PMC
November 2015

Kantian fractionalization predicts the conflict propensity of the international system.

Proc Natl Acad Sci U S A 2015 Sep 3;112(38):11812-6. Epub 2015 Sep 3.

Department of Mathematics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.

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http://dx.doi.org/10.1073/pnas.1509423112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4586843PMC
September 2015

Topological data analysis of contagion maps for examining spreading processes on networks.

Nat Commun 2015 Jul 21;6:7723. Epub 2015 Jul 21.

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1038/ncomms8723DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566922PMC
July 2015

Modeling neutralization kinetics of HIV by broadly neutralizing monoclonal antibodies in genital secretions coating the cervicovaginal mucosa.

PLoS One 2014 26;9(6):e100598. Epub 2014 Jun 26.

Division of Molecular Pharmaceutics, Eshelman School of Pharmacy, University of North Carolina - Chapel Hill, Chapel Hill, North Carolina, United States of America; UNC/NCSU Joint Department of Biomedical Engineering, University of North Carolina - Chapel Hill, Chapel Hill, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100598PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072659PMC
February 2015

Think locally, act locally: detection of small, medium-sized, and large communities in large networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Jan 26;91(1):012821. Epub 2015 Jan 26.

International Computer Science Institute, Berkeley, California 94704, USA and Department of Statistics, University of California at Berkeley, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1103/PhysRevE.91.012821DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5125638PMC
January 2015

Nonaxisymmetric high-aspect-ratio ellipsoids under shear: lowest-order correction for finite aspect ratios.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 Jul 8;90(1):013005. Epub 2014 Jul 8.

Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1103/PhysRevE.90.013005DOI Listing
July 2014

Dynamics on modular networks with heterogeneous correlations.

Chaos 2014 Jun;24(2):023106

MACSI, Department of Mathematics & Statistics, University of Limerick, Ireland.

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http://dx.doi.org/10.1063/1.4869983DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4000391PMC
June 2014

Fluctuation of similarity to detect transitions between distinct dynamical regimes in short time series.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 Jun 10;89(6):062908. Epub 2014 Jun 10.

Potsdam Institute for Climate Impact Research, P. O. Box 601203, 14412 Potsdam, Germany and Department of Physics, Humboldt University Berlin, Newtonstr. 15, 12489 Berlin, Germany.

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https://link.aps.org/doi/10.1103/PhysRevE.89.062908
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http://dx.doi.org/10.1103/PhysRevE.89.062908DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5125642PMC
June 2014

Transient antibody-mucin interactions produce a dynamic molecular shield against viral invasion.

Biophys J 2014 May;106(9):2028-36

University of North Carolina at Chapel Hill and North Carolina State University Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Division of Molecular Pharmaceutics, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2014.02.038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4017286PMC
May 2014

Task-based core-periphery organization of human brain dynamics.

PLoS Comput Biol 2013 26;9(9):e1003171. Epub 2013 Sep 26.

Department of Physics, University of California, Santa Barbara, Santa Barbara, California, United States of America ; Sage Center for the Study of the Mind, University of California, Santa Barbara, Santa Barbara, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3784512PMC
April 2014

Resolving structural variability in network models and the brain.

PLoS Comput Biol 2014 Mar 27;10(3):e1003491. Epub 2014 Mar 27.

Department of Mathematics, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America; Department of Applied Physical Sciences, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967917PMC
March 2014

Cross-linked structure of network evolution.

Chaos 2014 Mar;24(1):013112

Department of Psychology and UCSB Brain Imaging Center, University of California, Santa Barbara, California 93106, USA.

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http://dx.doi.org/10.1063/1.4858457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108627PMC
March 2014

Role of social environment and social clustering in spread of opinions in coevolving networks.

Chaos 2013 Dec;23(4):043123

Department of Mathematics, CB 3250, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1063/1.4833995DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108632PMC
December 2013

Multiopinion coevolving voter model with infinitely many phase transitions.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Dec 30;88(6):062818. Epub 2013 Dec 30.

Department of Mathematics, Box 90320, Duke University, Durham, North Carolina 27708-0320, USA.

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http://dx.doi.org/10.1103/PhysRevE.88.062818DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131864PMC
December 2013

Robust detection of dynamic community structure in networks.

Chaos 2013 Mar;23(1):013142

Department of Physics, University of California, Santa Barbara, California 93106, USA.

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http://dx.doi.org/10.1063/1.4790830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618100PMC
March 2013

Taxonomies of networks from community structure.

Phys Rev E Stat Nonlin Soft Matter Phys 2012 Sep 10;86(3 Pt 2):036104-36104. Epub 2012 Sep 10.

Department of Physics, University of Oxford, Oxford OX1 3PU, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4144942PMC
September 2012

Differential recruitment of the sensorimotor putamen and frontoparietal cortex during motor chunking in humans.

Neuron 2012 Jun;74(5):936-46

Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA 93106, USA.

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http://dx.doi.org/10.1016/j.neuron.2012.03.038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3372854PMC
June 2012

Graph fission in an evolving voter model.

Proc Natl Acad Sci U S A 2012 Mar 21;109(10):3682-7. Epub 2012 Feb 21.

Department of Mathematics, Duke University, Box 90320, Durham, NC 27708, USA.

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http://dx.doi.org/10.1073/pnas.1200709109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3309720PMC
March 2012

Accuracy of mean-field theory for dynamics on real-world networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2012 Feb 7;85(2 Pt 2):026106. Epub 2012 Feb 7.

MACSI, Department of Mathematics & Statistics, University of Limerick, Ireland.

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http://dx.doi.org/10.1103/PhysRevE.85.026106DOI Listing
February 2012

Mathematical genealogy and department prestige.

Chaos 2011 Dec;21(4):041104

Department of Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1063/1.3668043DOI Listing
December 2011

Dynamic reconfiguration of human brain networks during learning.

Proc Natl Acad Sci U S A 2011 May 18;108(18):7641-6. Epub 2011 Apr 18.

Complex Systems Group, Department of Physics, University of California, Santa Barbara, CA 93106, USA.

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http://dx.doi.org/10.1073/pnas.1018985108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3088578PMC
May 2011

The unreasonable effectiveness of tree-based theory for networks with clustering.

Phys Rev E Stat Nonlin Soft Matter Phys 2011 Mar 23;83(3 Pt 2):036112. Epub 2011 Mar 23.

Department of Mathematics and Statistics, University of Limerick, Ireland.

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http://dx.doi.org/10.1103/PhysRevE.83.036112DOI Listing
March 2011

Communities in multislice voting networks.

Chaos 2010 Dec;20(4):041108

University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1063/1.3518696DOI Listing
December 2010

Community structure in time-dependent, multiscale, and multiplex networks.

Science 2010 May;328(5980):876-8

Carolina Center for Interdisciplinary Applied Mathematics, Department of Mathematics, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1126/science.1184819DOI Listing
May 2010

Fluid simulation with articulated bodies.

IEEE Trans Vis Comput Graph 2010 Jan-Feb;16(1):70-80

Stanford University, Stanford, CA 94305-9020, USA.

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http://dx.doi.org/10.1109/TVCG.2009.66DOI Listing
March 2010

Virtual rheoscopic fluids.

IEEE Trans Vis Comput Graph 2010 Jan-Feb;16(1):147-60

Georgia Institute of Technology, College of Computing, Atlanta GA 30032-0760, USA.

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http://dx.doi.org/10.1109/TVCG.2009.46DOI Listing
March 2010

Visualization of communities in networks.

Chaos 2009 Dec;19(4):041104

University of North Carolina, Chapel Hill, North Carolina 27599-3250, USA.

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http://dx.doi.org/10.1063/1.3194108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188595PMC
December 2009

Spectral tripartitioning of networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2009 Sep 16;80(3 Pt 2):036111. Epub 2009 Sep 16.

Department of Mathematics, Carolina Center for Interdisciplinary Applied Mathematics, University of North Carolina, Chapel Hill, North Carolina 27599-3250, USA.

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http://dx.doi.org/10.1103/PhysRevE.80.036111DOI Listing
September 2009

Community structure in the U.S. House of Representatives.

Chaos 2006 Dec;16(4):041106

California Institute of Technology, Pasadena, California 91125-3600, USA.

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http://dx.doi.org/10.1063/1.2390556DOI Listing
December 2006

A network analysis of committees in the U.S. House of Representatives.

Proc Natl Acad Sci U S A 2005 May 16;102(20):7057-62. Epub 2005 May 16.

School of Mathematics, Georgia Institute of Technology, Atlanta, GA 30332-0160, USA.

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http://dx.doi.org/10.1073/pnas.0500191102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1129104PMC
May 2005