Publications by authors named "Peter J Bickel"

28Publications

David Blackwell, 1919-2010: An explorer in mathematics and statistics.

Authors:
Peter J Bickel

Proc Natl Acad Sci U S A 2020 Nov 13;117(47):29257-29259. Epub 2020 Nov 13.

Department of Statistics, University of California, Berkeley, CA 94720

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http://dx.doi.org/10.1073/pnas.2020164117DOI Listing
November 2020

NETWORK MODELLING OF TOPOLOGICAL DOMAINS USING HI-C DATA.

Ann Appl Stat 2019 Sep 17;13(3):1511-1536. Epub 2019 Oct 17.

University of California, Berkeley.

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http://dx.doi.org/10.1214/19-aoas1244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7508461PMC
September 2019

GeneFishing to reconstruct context specific portraits of biological processes.

Proc Natl Acad Sci U S A 2019 09 4;116(38):18943-18950. Epub 2019 Sep 4.

Department of Statistics, University of California, Berkeley, CA 94720;

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http://dx.doi.org/10.1073/pnas.1820340116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6754596PMC
September 2019

Metalearners for estimating heterogeneous treatment effects using machine learning.

Proc Natl Acad Sci U S A 2019 03 15;116(10):4156-4165. Epub 2019 Feb 15.

Department of Statistics, University of California, Berkeley, CA 94720;

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http://dx.doi.org/10.1073/pnas.1804597116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6410831PMC
March 2019

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy.

Proc Natl Acad Sci U S A 2019 01 31;116(3):900-908. Epub 2018 Dec 31.

Molecular Ecosystems Biology Department, Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720;

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http://dx.doi.org/10.1073/pnas.1808833115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6338827PMC
January 2019

Projection pursuit in high dimensions.

Proc Natl Acad Sci U S A 2018 09 27;115(37):9151-9156. Epub 2018 Aug 27.

Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100 Israel

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http://dx.doi.org/10.1073/pnas.1801177115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140545PMC
September 2018

Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila.

Genome Res 2015 Nov 20;25(11):1692-702. Epub 2015 Aug 20.

Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA;

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http://dx.doi.org/10.1101/gr.182675.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617965PMC
November 2015

Comparative analysis of the transcriptome across distant species.

Nature 2014 Aug;512(7515):445-8

1] Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA [2].

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http://dx.doi.org/10.1038/nature13424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155737PMC
August 2014

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data.

Genome Res 2014 Jul;24(7):1086-101

Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.170100.113
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http://dx.doi.org/10.1101/gr.170100.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079965PMC
July 2014

System wide analyses have underestimated protein abundances and the importance of transcription in mammals.

PeerJ 2014 27;2:e270. Epub 2014 Feb 27.

Genomics Division, Lawrence Berkeley National Laboratory , Berkeley, CA , USA.

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http://dx.doi.org/10.7717/peerj.270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3940484PMC
April 2014

Navigating and mining modENCODE data.

Methods 2014 Jun 15;68(1):38-47. Epub 2014 Mar 15.

Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2014.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857704PMC
June 2014

Genome-guided transcript assembly by integrative analysis of RNA sequence data.

Nat Biotechnol 2014 Apr 16;32(4):341-6. Epub 2014 Mar 16.

1] Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, California, USA. [2] Department of Statistics, University of California at Berkeley, Berkeley, California, USA. [3].

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http://search.proquest.com/openview/5a27f43084800d7458173e64
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http://www.nature.com/doifinder/10.1038/nbt.2850
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http://dx.doi.org/10.1038/nbt.2850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4037530PMC
April 2014

On robust regression with high-dimensional predictors.

Proc Natl Acad Sci U S A 2013 Sep 16;110(36):14557-62. Epub 2013 Aug 16.

Department of Statistics, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1073/pnas.1307842110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767561PMC
September 2013

Optimal M-estimation in high-dimensional regression.

Proc Natl Acad Sci U S A 2013 Sep 16;110(36):14563-8. Epub 2013 Aug 16.

Department of Statistics, University of California, Berkeley, CA 94720, USA.

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http://www.pnas.org/content/110/36/14563.full.pdf
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http://www.pnas.org/lookup/doi/10.1073/pnas.1307845110
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http://dx.doi.org/10.1073/pnas.1307845110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767535PMC
September 2013

Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation.

Proc Natl Acad Sci U S A 2011 Dec 1;108(50):19867-72. Epub 2011 Dec 1.

Department of Statistics, University of California, Berkeley, CA 94720, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1113972108
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http://dx.doi.org/10.1073/pnas.1113972108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3250192PMC
December 2011

A nonparametric view of network models and Newman-Girvan and other modularities.

Proc Natl Acad Sci U S A 2009 Dec 23;106(50):21068-73. Epub 2009 Nov 23.

University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1073/pnas.0907096106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795514PMC
December 2009

An overview of recent developments in genomics and associated statistical methods.

Philos Trans A Math Phys Eng Sci 2009 Nov;367(1906):4313-37

Department of Statistics University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1098/rsta.2009.0164DOI Listing
November 2009

Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study.

Proc Natl Acad Sci U S A 2006 Jun 12;103(25):9584-9. Epub 2006 Jun 12.

Department of Biochemistry and Biophysics, University of California-San Francisco, 600 16th Street, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1073/pnas.0603534103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1480450PMC
June 2006

Estimating motifs under order restrictions.

Stat Appl Genet Mol Biol 2005 10;4:Article1. Epub 2005 Jan 10.

Mathematical Institute, Leiden University.

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http://dx.doi.org/10.2202/1544-6115.1100DOI Listing
May 2006

Detecting DNA regulatory motifs by incorporating positional trends in information content.

Genome Biol 2004 24;5(7):R50. Epub 2004 Jun 24.

Department of Statistics, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1186/gb-2004-5-7-r50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC463320PMC
October 2004

Finding important sites in protein sequences.

Proc Natl Acad Sci U S A 2002 Nov 4;99(23):14764-71. Epub 2002 Nov 4.

Department of Statistics, University of California, Berkeley 94720, USA.

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http://dx.doi.org/10.1073/pnas.222508899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC137493PMC
November 2002