Peter H Sudmant

Peter H Sudmant

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Peter H Sudmant

Peter H Sudmant

Publications by authors named "Peter H Sudmant"

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30Publications

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Widespread Accumulation of Ribosome-Associated Isolated 3' UTRs in Neuronal Cell Populations of the Aging Brain.

Cell Rep 2018 11;25(9):2447-2456.e4

Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Ave., Cambridge, MA 02139, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.10.094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354779PMC
November 2018

RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation.

Mol Cell 2016 10 6;64(2):294-306. Epub 2016 Oct 6.

Departments of Biology and Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1016/j.molcel.2016.08.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5107313PMC
October 2016

Meta-analysis of RNA-seq expression data across species, tissues and studies.

Genome Biol 2015 Dec 22;16:287. Epub 2015 Dec 22.

Department of Biology and Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02142, USA.

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http://dx.doi.org/10.1186/s13059-015-0853-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4699362PMC
December 2015

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

The Role of the Antiviral APOBEC3 Gene Family in Protecting Chimpanzees against Lentiviruses from Monkeys.

PLoS Pathog 2015 Sep 22;11(9):e1005149. Epub 2015 Sep 22.

Divisions of Human Biology and Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1005149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578921PMC
September 2015

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals.

Genome Res 2015 May 6;25(5):750-61. Epub 2015 Feb 6.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA;

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http://dx.doi.org/10.1101/gr.182212.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417122PMC
May 2015

Resolving the complexity of the human genome using single-molecule sequencing.

Nature 2015 Jan 10;517(7536):608-11. Epub 2014 Nov 10.

1] Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.

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https://www.nature.com/articles/nature13907.pdf
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317254/
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http://dx.doi.org/10.1038/nature13907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317254PMC
January 2015

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.

Nat Genet 2014 Dec 19;46(12):1293-302. Epub 2014 Oct 19.

1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/ng.3120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4244265PMC
December 2014

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:
Iosif Lazaridis Nick Patterson Alissa Mittnik Gabriel Renaud Swapan Mallick Karola Kirsanow Peter H Sudmant Joshua G Schraiber Sergi Castellano Mark Lipson Bonnie Berger Christos Economou Ruth Bollongino Qiaomei Fu Kirsten I Bos Susanne Nordenfelt Heng Li Cesare de Filippo Kay Prüfer Susanna Sawyer Cosimo Posth Wolfgang Haak Fredrik Hallgren Elin Fornander Nadin Rohland Dominique Delsate Michael Francken Jean-Michel Guinet Joachim Wahl George Ayodo Hamza A Babiker Graciela Bailliet Elena Balanovska Oleg Balanovsky Ramiro Barrantes Gabriel Bedoya Haim Ben-Ami Judit Bene Fouad Berrada Claudio M Bravi Francesca Brisighelli George B J Busby Francesco Cali Mikhail Churnosov David E C Cole Daniel Corach Larissa Damba George van Driem Stanislav Dryomov Jean-Michel Dugoujon Sardana A Fedorova Irene Gallego Romero Marina Gubina Michael Hammer Brenna M Henn Tor Hervig Ugur Hodoglugil Aashish R Jha Sena Karachanak-Yankova Rita Khusainova Elza Khusnutdinova Rick Kittles Toomas Kivisild William Klitz Vaidutis Kučinskas Alena Kushniarevich Leila Laredj Sergey Litvinov Theologos Loukidis Robert W Mahley Béla Melegh Ene Metspalu Julio Molina Joanna Mountain Klemetti Näkkäläjärvi Desislava Nesheva Thomas Nyambo Ludmila Osipova Jüri Parik Fedor Platonov Olga Posukh Valentino Romano Francisco Rothhammer Igor Rudan Ruslan Ruizbakiev Hovhannes Sahakyan Antti Sajantila Antonio Salas Elena B Starikovskaya Ayele Tarekegn Draga Toncheva Shahlo Turdikulova Ingrida Uktveryte Olga Utevska René Vasquez Mercedes Villena Mikhail Voevoda Cheryl A Winkler Levon Yepiskoposyan Pierre Zalloua Tatijana Zemunik Alan Cooper Cristian Capelli Mark G Thomas Andres Ruiz-Linares Sarah A Tishkoff Lalji Singh Kumarasamy Thangaraj Richard Villems David Comas Rem Sukernik Mait Metspalu Matthias Meyer Evan E Eichler Joachim Burger Montgomery Slatkin Svante Pääbo Janet Kelso David Reich Johannes Krause

Nature 2014 Sep;513(7518):409-13

1] Institute for Archaeological Sciences, University of Tübingen, Tübingen 72074, Germany. [2] Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany. [3] Max Planck Institut für Geschichte und Naturwissenschaften, Jena 07745, Germany.

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https://genetics.med.harvard.edu/reich/Reich_Lab/Welcome_fil
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http://biorxiv.org/content/biorxiv/early/2013/12/23/001552.f
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http://www.geo.uni-tuebingen.de/fileadmin/website/arbeitsber
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http://www.nature.com/doifinder/10.1038/nature13673
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http://dx.doi.org/10.1038/nature13673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4170574PMC
September 2014

Pseudogenization of testis-specific Lfg5 predates human/Neanderthal divergence.

J Hum Genet 2014 May 6;59(5):288-91. Epub 2014 Mar 6.

Department of Psychiatry, Beth Israel Deaconess Medical Center, BSHC, Boston, MA, USA.

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http://dx.doi.org/10.1038/jhg.2014.6DOI Listing
May 2014

Great ape genetic diversity and population history.

Nature 2013 Jul 3;499(7459):471-5. Epub 2013 Jul 3.

Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain.

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http://dx.doi.org/10.1038/nature12228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3822165PMC
July 2013

Copy number variation detection and genotyping from exome sequence data.

Genome Res 2012 Aug 14;22(8):1525-32. Epub 2012 May 14.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.138115.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409265PMC
August 2012

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.

Genome Res 2012 Jun 14;22(6):1036-49. Epub 2012 Mar 14.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA

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http://dx.doi.org/10.1101/gr.136556.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371704PMC
June 2012

Haplotype-resolved genome sequencing of a Gujarati Indian individual.

Nat Biotechnol 2011 Jan 19;29(1):59-63. Epub 2010 Dec 19.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/nbt.1740DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116788PMC
January 2011