Peter D Vize

Peter D Vize

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Peter D Vize

Peter D Vize

Publications by authors named "Peter D Vize"

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Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral.

Mol Ecol 2019 Aug 10;28(16):3629-3641. Epub 2019 Aug 10.

Department of Biological Sciences, University of Calgary, Calgary, AB, Canada.

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http://dx.doi.org/10.1111/mec.15173DOI Listing
August 2019

Distinguishing Species Using GC Contents in Mixed DNA or RNA Sequences.

Evol Bioinform Online 2018 18;14:1176934318788866. Epub 2018 Jul 18.

Department of Biological Sciences, University of Calgary, Calgary, AB, Canada.

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http://dx.doi.org/10.1177/1176934318788866DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052495PMC
July 2018

Xenopus genomic data and browser resources.

Dev Biol 2017 06 31;426(2):194-199. Epub 2016 Mar 31.

Division of Developmental Biology, Cincinnati Children's Research Foundation, Cincinnati, OH, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5045824PMC
http://dx.doi.org/10.1016/j.ydbio.2016.03.030DOI Listing
June 2017

Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.

Mol Ecol 2017 May 23;26(9):2514-2526. Epub 2017 Feb 23.

Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada, T2N1N4.

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http://dx.doi.org/10.1111/mec.14043DOI Listing
May 2017

Genome evolution in the allotetraploid frog Xenopus laevis.

Nature 2016 10;538(7625):336-343

University of California, Berkeley, Department of Molecular and Cell Biology and Center for Integrative Genomics, Life Sciences Addition #3200, Berkeley, California 94720-3200, USA.

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http://dx.doi.org/10.1038/nature19840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313049PMC
October 2016

Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora.

Biol Bull 2016 04;230(2):130-42

Department of Biological Science, University of Calgary, 2500 University Drive NW, Calgary, Alberta T2N 1N4, Canada; and

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http://dx.doi.org/10.1086/BBLv230n2p130DOI Listing
April 2016

Database and Informatic Challenges in Representing Both Diploid and Tetraploid Xenopus Species in Xenbase.

Cytogenet Genome Res 2015 27;145(3-4):278-82. Epub 2015 May 27.

Departments of Biological Sciences and Computer Science, University of Calgary, Calgary, Alta., Canada.

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http://dx.doi.org/10.1159/000430427DOI Listing
December 2015

Xenbase: Core features, data acquisition, and data processing.

Genesis 2015 Aug 16;53(8):486-97. Epub 2015 Jul 16.

Departments of Biological Science and Computer Science, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1002/dvg.22873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545734PMC
August 2015

Model organism databases.

Genesis 2015 Aug;53(8):449

Institute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403-1254, USA.

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http://dx.doi.org/10.1002/dvg.22882DOI Listing
August 2015

The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.

Database (Oxford) 2014 7;2014. Epub 2014 Nov 7.

Department of Biological Sciences, University of Calgary, 2500 University Dr NW, Calgary, Alberta, Canada, T2N 1N4

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http://dx.doi.org/10.1093/database/bau108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224262PMC
February 2015

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.

Nucleic Acids Res 2015 Jan 13;43(Database issue):D756-63. Epub 2014 Oct 13.

University of Calgary-Computer Science, Calgary, Alberta, Canada University of Calgary-Biological Sciences, Calgary, Alberta, Canada

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http://dx.doi.org/10.1093/nar/gku956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384024PMC
January 2015

Finding our way through phenotypes.

PLoS Biol 2015 Jan 6;13(1):e1002033. Epub 2015 Jan 6.

Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285398PMC
January 2015

Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species.

PLoS One 2013 9;8(9):e72830. Epub 2013 Sep 9.

Integrative Biology Section, The University of Texas at Austin, Austin, Texas, United States of America ; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0072830PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767691PMC
June 2014

Staging the self-assembly process: inspiration from biological development.

Artif Life 2014 1;20(1):29-53. Epub 2013 Feb 1.

University of Paderborn.

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http://dx.doi.org/10.1162/ARTL_a_00095DOI Listing
March 2014

mRNA fluorescence in situ hybridization to determine overlapping gene expression in whole-mount mouse embryos.

Dev Dyn 2013 Sep 27;242(9):1094-100. Epub 2013 Jun 27.

Department of Biological Sciences, University of Calgary, Calgary, Canada.

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http://dx.doi.org/10.1002/dvdy.23993DOI Listing
September 2013

The Xenbase literature curation process.

Database (Oxford) 2013 9;2013:bas046. Epub 2013 Jan 9.

Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada T2N1N4.

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https://academic.oup.com/database/article/doi/10.1093/databa
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http://dx.doi.org/10.1093/database/bas046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540419PMC
June 2013

Antibody development and use in chromogenic and fluorescent immunostaining.

Methods Mol Biol 2012 ;917:411-29

Faculty of Life Sciences, University of Manchester, Manchester, England, UK.

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http://dx.doi.org/10.1007/978-1-61779-992-1_23DOI Listing
January 2013

Multicolor fluorescent in situ mRNA hybridization (FISH) on whole mounts and sections.

Methods Mol Biol 2012 ;917:431-44

The Faculty of Life Sciences, University of Manchester, Manchester, England, UK.

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http://dx.doi.org/10.1007/978-1-61779-992-1_24DOI Listing
January 2013

Xenbase: expansion and updates of the Xenopus model organism database.

Nucleic Acids Res 2013 Jan 3;41(Database issue):D865-70. Epub 2012 Nov 3.

Division of Developmental Biology, Cincinnati Children's Research Foundation, 3333 Burnet Avenue, S3.620, Cincinnati, OH 45229-3039, USA.

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http://dx.doi.org/10.1093/nar/gks1025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531164PMC
January 2013

Photoreception and signal transduction in corals: proteomic and behavioral evidence for cytoplasmic calcium as a mediator of light responsivity.

Biol Bull 2012 Dec;223(3):291-9

Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, AB, Canada.

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http://dx.doi.org/10.1086/BBLv223n3p291DOI Listing
December 2012

Circadian cycles of gene expression in the coral, Acropora millepora.

PLoS One 2011 19;6(9):e25072. Epub 2011 Sep 19.

Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025072PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176305PMC
February 2012

Non-canonical wnt signals antagonize and canonical wnt signals promote cell proliferation in early kidney development.

Dev Dyn 2011 Jun 4;240(6):1558-66. Epub 2011 Apr 4.

Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1002/dvdy.22626DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3274170PMC
June 2011

Xenbase: gene expression and improved integration.

Nucleic Acids Res 2010 Jan 1;38(Database issue):D607-12. Epub 2009 Nov 1.

Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1093/nar/gkp953DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808955PMC
January 2010

Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos.

Nat Protoc 2009 ;4(6):975-83

Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1038/nprot.2009.69DOI Listing
August 2009

Requirement of Wnt/beta-catenin signaling in pronephric kidney development.

Mech Dev 2009 Mar-Apr;126(3-4):142-59. Epub 2008 Dec 7.

Department of Biochemistry and Molecular Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Unit 1000, Houston, TX 77030, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S092547730800181
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http://dx.doi.org/10.1016/j.mod.2008.11.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2684468PMC
April 2009

Transcriptome analysis of the circadian regulatory network in the coral Acropora millepora.

Authors:
Peter D Vize

Biol Bull 2009 Apr;216(2):131-7

Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N1N4, Canada.

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http://dx.doi.org/10.1086/BBLv216n2p131DOI Listing
April 2009

An ontology for Xenopus anatomy and development.

BMC Dev Biol 2008 Sep 25;8:92. Epub 2008 Sep 25.

Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1186/1471-213X-8-92DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561031PMC
September 2008

Collectrin/tmem27 is expressed at high levels in all segments of the developing Xenopus pronephric nephron and in the Wolffian duct.

Gene Expr Patterns 2008 Apr 23;8(4):271-4. Epub 2007 Dec 23.

Departments of Biological Science, University of Calgary, 2500 University Drive NW, Calgary, Alta., Canada T2N 1N4.

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http://linkinghub.elsevier.com/retrieve/pii/S1567133X0700162
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http://dx.doi.org/10.1016/j.gep.2007.12.002DOI Listing
April 2008

Xenbase: a Xenopus biology and genomics resource.

Nucleic Acids Res 2008 Jan 4;36(Database issue):D761-7. Epub 2007 Nov 4.

Department of Computer Science, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1093/nar/gkm826DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238855PMC
January 2008

Projecting 2D gene expression data into 3D and 4D space.

Dev Dyn 2007 Apr;236(4):1036-43

Department of Biological Sciences, University of Calgary, Alberta, Canada.

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http://dx.doi.org/10.1002/dvdy.21120DOI Listing
April 2007

FGF is essential for both condensation and mesenchymal-epithelial transition stages of pronephric kidney tubule development.

Dev Biol 2006 Sep 5;297(1):103-17. Epub 2006 May 5.

Department of Biological Science, University of Calgary, 2500 University Drive NW, Calgary, Alberta, Canada T2N 1N4.

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http://linkinghub.elsevier.com/retrieve/pii/S001216060600768
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http://dx.doi.org/10.1016/j.ydbio.2006.04.469DOI Listing
September 2006

Amino acid cotransporter SLC3A2 is selectively expressed in the early proximal segment of Xenopus pronephric kidney nephrons.

Gene Expr Patterns 2005 Aug;5(6):774-7

Department of Biological Sciences, University of Calgary, 2500 University Drive NW, Calgary, Alta., Canada T2N 1N4.

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https://linkinghub.elsevier.com/retrieve/pii/S1567133X050003
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http://dx.doi.org/10.1016/j.modgep.2005.04.003DOI Listing
August 2005

Nephrin expression and three-dimensional morphogenesis of the Xenopus pronephric glomus.

Dev Dyn 2005 Jul;233(3):1131-9

Department of Biological Science, University of Calgary, Calgary, Alberta, Canada.

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http://doi.wiley.com/10.1002/dvdy.20415
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http://dx.doi.org/10.1002/dvdy.20415DOI Listing
July 2005

Pronephric regulation of acid-base balance; coexpression of carbonic anhydrase type 2 and sodium-bicarbonate cotransporter-1 in the late distal segment.

Dev Dyn 2005 May;233(1):142-4

Department of Biological Science, University of Calgary, 2500 University Drive NW, Calgary, Alberta T2N 1N4, Canada.

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http://doi.wiley.com/10.1002/dvdy.20225
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http://dx.doi.org/10.1002/dvdy.20225DOI Listing
May 2005

A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns.

Bioinformatics 2005 Apr 5;21(7):1278-9. Epub 2004 Nov 5.

Department of Biological Science, University of Calgary, Alberta T2N 1N4, Canada.

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http://dx.doi.org/10.1093/bioinformatics/bti120DOI Listing
April 2005

Proximo-distal specialization of epithelial transport processes within the Xenopus pronephric kidney tubules.

Dev Biol 2004 Jul;271(2):322-38

Department of Biological Science, University of Calgary, Calgary, Alberta, Canada T2N 1N4.

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https://linkinghub.elsevier.com/retrieve/pii/S00121606040026
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http://dx.doi.org/10.1016/j.ydbio.2004.03.036DOI Listing
July 2004

A Homeric view of kidney evolution: A reprint of H.W. Smith's classic essay with a new introduction. Evolution of the kidney. 1943.

Anat Rec A Discov Mol Cell Evol Biol 2004 Apr;277(2):344-54

Department of Biological Science, University of Calgary, Alberta, Canada.

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http://dx.doi.org/10.1002/ar.a.20017DOI Listing
April 2004

PCP gene family in Symbiodinium from Hippopus hippopus: low levels of concerted evolution, isoform diversity, and spectral tuning of chromophores.

Mol Biol Evol 2003 Dec 29;20(12):2143-54. Epub 2003 Aug 29.

School of Biological Sciences, University of Texas at Austin, USA.

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http://dx.doi.org/10.1093/molbev/msg233DOI Listing
December 2003

The chloride conductance channel ClC-K is a specific marker for the Xenopus pronephric distal tubule and duct.

Authors:
Peter D Vize

Gene Expr Patterns 2003 Jun;3(3):347-50

Department of Biological Science, University of Calgary, Calgary, Alberta T2N 1N4, Canada.

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June 2003