Peng Ni

Peng Ni

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Peng Ni

Peng Ni

Publications by authors named "Peng Ni"

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DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning.

Bioinformatics 2019 Apr 17. Epub 2019 Apr 17.

School of Information Science and Engineering, Central South University, Changsha, China.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/btz276DOI Listing
April 2019

Homocysteine and Digestive Tract Cancer Risk: A Dose-Response Meta-Analysis.

J Oncol 2018 18;2018:3720684. Epub 2018 Dec 18.

Department of Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

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http://dx.doi.org/10.1155/2018/3720684DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6312580PMC
December 2018

Constructing Disease Similarity Networks Based on Disease Module Theory.

IEEE/ACM Trans Comput Biol Bioinform 2018 Mar 21. Epub 2018 Mar 21.

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http://dx.doi.org/10.1109/TCBB.2018.2817624DOI Listing
March 2018

DNRLMF-MDA:Predicting microRNA-Disease Associations Based on Similarities of microRNAs and Diseases.

IEEE/ACM Trans Comput Biol Bioinform 2019 Jan-Feb;16(1):233-243. Epub 2017 Nov 22.

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http://dx.doi.org/10.1109/TCBB.2017.2776101DOI Listing
November 2017

Relation between leaching characteristics of heavy metals and physical properties of fly ashes from typical municipal solid waste incinerators.

Environ Technol 2017 Sep 27;38(17):2105-2118. Epub 2016 Oct 27.

a State Key Laboratory of Coal Combustion , Huazhong University of Science and Technology , Wuhan , People's Republic of China.

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http://dx.doi.org/10.1080/09593330.2016.1246612DOI Listing
September 2017

Influence of carbonation under oxy-fuel combustion flue gas on the leachability of heavy metals in MSWI fly ash.

Waste Manag 2017 Sep 24;67:171-180. Epub 2017 May 24.

State Key Laboratory of Coal Combustion, School of Energy and Power Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.

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http://dx.doi.org/10.1016/j.wasman.2017.05.023DOI Listing
September 2017

Construction of refined protein interaction network for predicting essential proteins.

IEEE/ACM Trans Comput Biol Bioinform 2017 Feb 7. Epub 2017 Feb 7.

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http://dx.doi.org/10.1109/TCBB.2017.2665482DOI Listing
February 2017

Phosphorylation of the Brome Mosaic Virus Capsid Regulates the Timing of Viral Infection.

J Virol 2016 09 12;90(17):7748-60. Epub 2016 Aug 12.

Department of Molecular & Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA

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http://dx.doi.org/10.1128/JVI.00833-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988143PMC
September 2016

Mapping RNA interactions to proteins in virions using CLIP-Seq.

Methods Mol Biol 2015 ;1297:213-24

Department of Molecular and Cellular Biochemistry, Indiana University, 212 S. Hawthorne St., 201A Simon Hall, Bloomington, IN, 47405, USA.

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http://dx.doi.org/10.1007/978-1-4939-2562-9_15DOI Listing
January 2016

The tripartite virions of the brome mosaic virus have distinct physical properties that affect the timing of the infection process.

J Virol 2014 Jun 26;88(11):6483-91. Epub 2014 Mar 26.

Department of Molecular & Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.

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http://dx.doi.org/10.1128/JVI.00377-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4093861PMC
June 2014

The plant host can affect the encapsidation of brome mosaic virus (BMV) RNA: BMV virions are surprisingly heterogeneous.

J Mol Biol 2014 Mar 13;426(5):1061-76. Epub 2013 Sep 13.

Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2013.09.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944473PMC
March 2014

Disruption of putrescine biosynthesis in Shewanella oneidensis enhances biofilm cohesiveness and performance in Cr(VI) immobilization.

Appl Environ Microbiol 2014 Feb 20;80(4):1498-506. Epub 2013 Dec 20.

Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Singapore.

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http://dx.doi.org/10.1128/AEM.03461-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3911039PMC
February 2014

Non-encapsidation activities of the capsid proteins of positive-strand RNA viruses.

Authors:
Peng Ni C Cheng Kao

Virology 2013 Nov 27;446(1-2):123-32. Epub 2013 Aug 27.

Department of Molecular & Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1016/j.virol.2013.07.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3818703PMC
November 2013

Improvement of plant growth and seed yield in Jatropha curcas by a novel nitrogen-fixing root associated Enterobacter species.

Biotechnol Biofuels 2013 Oct 1;6(1):140. Epub 2013 Oct 1.

Biomaterials and Biocatalysts Group, Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604, Republic of Singapore.

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http://dx.doi.org/10.1186/1754-6834-6-140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879406PMC
October 2013

Complete Genome Sequence of Enterobacter sp. Strain R4-368, an Endophytic N-Fixing Gammaproteobacterium Isolated from Surface-Sterilized Roots of Jatropha curcas L.

Genome Announc 2013 Aug 1;1(4). Epub 2013 Aug 1.

Biomaterials and Biocatalysts Group, Temasek Life Sciences Laboratory, National University of Singapore, Singapore.

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http://dx.doi.org/10.1128/genomeA.00544-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3731841PMC
August 2013

Characterization of glyceraldehyde-3-phosphate dehydrogenase gene RtGPD1 and development of genetic transformation method by dominant selection in oleaginous yeast Rhodosporidium toruloides.

Appl Microbiol Biotechnol 2013 Jan 22;97(2):719-29. Epub 2012 Jun 22.

Biomaterials and Biocatalysts Group, Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604, Singapore.

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http://link.springer.com/10.1007/s00253-012-4223-9
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http://dx.doi.org/10.1007/s00253-012-4223-9DOI Listing
January 2013

The coat protein leads the way: an update on basic and applied studies with the Brome mosaic virus coat protein.

Mol Plant Pathol 2011 May 25;12(4):403-12. Epub 2010 Nov 25.

Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1111/j.1364-3703.2010.00678.xDOI Listing
May 2011

[Determination of melamine in cosmetics by hydrophilic interaction chromatography-tandem mass spectrometry].

Se Pu 2010 Dec;28(12):1189-91

Nantong Entry-Exit Inspection and Quarantine Bureau, Nantong 226005, China.

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December 2010

Effects of amino-acid substitutions in the Brome mosaic virus capsid protein on RNA encapsidation.

Mol Plant Microbe Interact 2010 Nov;23(11):1433-47

Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1094/MPMI-05-10-0118DOI Listing
November 2010

The relationship between functional mobility and the intensity of physical therapy intervention in children with traumatic brain injury.

Pediatr Phys Ther 2004 ;16(3):157-64

The Research Center for Children with Special Health Care Needs, Franciscan Hospital for Children, Boston, MA 02135, USA.

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http://dx.doi.org/10.1097/01.PEP.0000136004.69289.01DOI Listing
August 2007

Development of an applied cognition scale to measure rehabilitation outcomes.

Arch Phys Med Rehabil 2004 Dec;85(12):2030-5

Center for Rehabilitation Effectiveness, Sargent College of Health and Rehabilitation Sciences, Boston University, MA 02215, USA.

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December 2004

Pediatric physical functioning reference curves.

Pediatr Neurol 2004 Nov;31(5):333-41

Health and Disability Research Institute, Boston University, Boston, MA 02215, USA.

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http://dx.doi.org/10.1016/j.pediatrneurol.2004.05.002DOI Listing
November 2004

Is patient-reported function reliable for monitoring postacute outcomes?

Am J Phys Med Rehabil 2003 Aug;82(8):614-21

Research and Training Center on Measuring Rehabilitation Outcomes, Boston University, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1097/01.PHM.0000073818.34847.F0DOI Listing
August 2003