Publications




Phylogeny-aware identification and correction of taxonomically mislabeled sequences.
Nucleic Acids Res 2016 Jun 10;44(11):5022-33. Epub 2016 May 10.
The Exelixis Lab, Scientific Computing Group, Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany Karlsruhe Institute of Technology, Institute for Theoretical Informatics, Postfach 6980, 76128 Karlsruhe, Germany.

The magnitude of gonadotoxicity of chemotherapy drugs on ovarian follicles and granulosa cells varies depending upon the category of the drugs and the type of granulosa cells.
Hum Reprod 2015 Dec 13;30(12):2926-35. Epub 2015 Oct 13.
Department of Obstetrics and Gynecology, Koc University School of Medicine, Istanbul, Turkey American Hospital Women's Health Center, Comprehensive Cancer Care and Fertility Preservation Programs, Assisted Reproduction Unit, Istanbul, Turkey

Minimum Information about a Biosynthetic Gene cluster.
Nat Chem Biol 2015 Sep;11(9):625-31
1] Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, Germany. [2] Jacobs University Bremen gGmbH, Bremen, Germany.

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.
Genome Biol Evol 2015 Jul 1;7(7):1988-99. Epub 2015 Jul 1.
Bioinformatics and Genomics, Centre for Genomic Regulation, Barcelona, Spain Universitat Pompeu Fabra, Barcelona, Spain Institució Catalana de Recerca I Estudis Avançats, Barcelona, Spain.


MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.
ISME J 2014 Jan 24;8(1):1-3. Epub 2013 Oct 24.
Department of Epidemiology and Public Health, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.

The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.
Nucleic Acids Res 2014 Jan 28;42(Database issue):D643-8. Epub 2013 Nov 28.
Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany, Department of Botany, University of British Columbia, Vancouver V6T 1Z4, Canada, Department of Zoology, University of British Columbia, Vancouver V6T 1Z4, Canada, Ribocon GmbH, D-28359 Bremen, Germany, School of Engineering and Science, Jacobs University Bremen gGmbH, D-28759 Bremen, Germany and Lehrstuhl für Mikrobiologie, Technische Universität München, D-853530 Freising, Germany.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nat Biotechnol 2011 May;29(5):415-20
Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.


Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.
Nat Rev Microbiol 2014 09;12(9):635-45
Marine Microbiology Group, Department of Ecology and Marine Resources, Mediterranean Institute for Advanced Studies (Spanish National Research Council (CSIC)-University of the Balearic Islands (UIB)), E-07190 Esporles, Balearic Islands, Spain.


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