Publications by authors named "Peixiang Ni"

42Publications

Noninvasive prenatal diagnosis of hemophilia A by a haplotype-based approach using cell-free fetal DNA.

Biotechniques 2020 03 30;68(3):117-121. Epub 2020 Jan 30.

BGI Genomics, BGI-Shenzhen, Bei Shan Industrial Zone, Yantian District, Shenzhen 518083, Guangdong, China.

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http://dx.doi.org/10.2144/btn-2019-0113DOI Listing
March 2020

Circulating tumor DNA detection is correlated to histologic types in patients with early-stage non-small-cell lung cancer.

Lung Cancer 2019 08 31;134:108-116. Epub 2019 May 31.

Department of Anesthesiology, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin, China. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2019.05.034DOI Listing
August 2019

Detection of virus in CSF from the cases with meningoencephalitis by next-generation sequencing.

J Neurovirol 2016 Apr 27;22(2):240-5. Epub 2015 Oct 27.

Department of Neurology, Peking Union Medical College Hospital, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing, 100730, China.

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http://dx.doi.org/10.1007/s13365-015-0390-7DOI Listing
April 2016

The role of China in the global spread of the current cholera pandemic.

PLoS Genet 2015 Mar 13;11(3):e1005072. Epub 2015 Mar 13.

State Key Laboratory for Infectious Disease Prevention and Control. National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China.

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http://dx.doi.org/10.1371/journal.pgen.1005072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4358972PMC
March 2015

Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant.

Plant J 2015 Mar;81(5):810-21

Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.

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http://dx.doi.org/10.1111/tpj.12761DOI Listing
March 2015

A survey of overlooked viral infections in biological experiment systems.

PLoS One 2014 21;9(8):e105348. Epub 2014 Aug 21.

College of Pharmacy, State Key Laboratory of Medicinal Chemical Biology and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Tianjin, China; Tianjin International Joint Academy of Biotechnology and Medicine, Tianjin, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105348PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4140767PMC
May 2015

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.

Nature 2014 Aug 2;512(7513):194-7. Epub 2014 Jul 2.

1] BGI-Shenzhen, Shenzhen 518083, China [2] Department of Integrative Biology, University of California, Berkeley, California 94720 USA [3] Department of Statistics, University of California, Berkeley, California 94720, USA [4] Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.

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http://www.nature.com/articles/nature13408
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http://dx.doi.org/10.1038/nature13408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134395PMC
August 2014

Genome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease.

PLoS One 2014 17;9(4):e95543. Epub 2014 Apr 17.

Key Laboratory of Monitoring and Control of Tropical Agricultural and Forest Invasive Alien Pests, Ministry of Agriculture, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0095543PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3990668PMC
June 2015

Genomic evolution of 11 type strains within family Planctomycetaceae.

PLoS One 2014 29;9(1):e86752. Epub 2014 Jan 29.

Shenzhen Key Laboratory of Environmental Microbial Genomics and Application, BGI-Shenzhen, Shenzhen, China ; Shenzhen Key Laboratory of Bioenergy, BGI-Shenzhen, Shenzhen, China ; BGI-Shenzhen, Shenzhen, China ; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086752PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3906078PMC
September 2014

High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus.

Nat Commun 2013 ;4:2673

1] State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China [2] Key Laboratory of Physiology, Ecology and Genetic Improvement of Food Crop in Henan Province and College of Life Sciences, Henan Agricultural University, Zhengzhou, Henan Province 450002, China [3].

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http://dx.doi.org/10.1038/ncomms3673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3826619PMC
May 2014

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

Genome sequences of three Helicobacter pylori strains isolated from atrophic gastritis and gastric ulcer patients in China.

J Bacteriol 2012 Nov;194(22):6314-5

State Key Laboratory for Infectious Disease Prevention and Control and National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.

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http://dx.doi.org/10.1128/JB.01399-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486401PMC
November 2012

Revised genome sequence of Burkholderia thailandensis MSMB43 with improved annotation.

J Bacteriol 2012 Sep;194(17):4749-50

CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.

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http://dx.doi.org/10.1128/JB.00931-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3415525PMC
September 2012

Genome sequence of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon which harbors a bop gene.

J Bacteriol 2011 Dec;193(24):7023-4

Institute of Microbiology, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.

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http://dx.doi.org/10.1128/JB.06282-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3232858PMC
December 2011

Genome sequence and analysis of the tuber crop potato.

Nature 2011 Jul 10;475(7355):189-95. Epub 2011 Jul 10.

BGI-Shenzhen, Chinese Ministry of Agricultural, Key Lab of Genomics, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature10158DOI Listing
July 2011

Evolutionary transients in the rice transcriptome.

Genomics Proteomics Bioinformatics 2010 Dec;8(4):211-28

Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

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https://linkinghub.elsevier.com/retrieve/pii/S16720229106002
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http://dx.doi.org/10.1016/S1672-0229(10)60023-XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054128PMC
December 2010

The sequence and de novo assembly of the giant panda genome.

Nature 2010 Jan 13;463(7279):311-7. Epub 2009 Dec 13.

BGI-Shenzhen, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature08696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497PMC
January 2010

Comparing the whole-genome-shotgun and map-based sequences of the rice genome.

Trends Plant Sci 2006 Aug 13;11(8):387-91. Epub 2006 Jul 13.

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing 101300, China.

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http://dx.doi.org/10.1016/j.tplants.2006.06.005DOI Listing
August 2006

Applications of the double-barreled data in whole-genome shotgun sequence assembly and analysis.

Sci China C Life Sci 2005 Jun;48(3):300-6

College of Life Sciences, Peking University, Beijing 100871, China.

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http://dx.doi.org/10.1007/BF03183625DOI Listing
June 2005

The Genomes of Oryza sativa: a history of duplications.

PLoS Biol 2005 Feb 1;3(2):e38. Epub 2005 Feb 1.

Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, China.

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http://dx.doi.org/10.1371/journal.pbio.0030038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546038PMC
February 2005

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.

Nature 2004 Dec;432(7018):717-22

Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China.

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http://dx.doi.org/10.1038/nature03156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2263125PMC
December 2004

Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison.

Funct Integr Genomics 2004 May 10;4(2):84-93. Epub 2004 Feb 10.

Department of Agriculture, 3 Baron-Hay Court, WA 6151, South Perth, Australia.

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http://dx.doi.org/10.1007/s10142-004-0104-3DOI Listing
May 2004

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.

Nucleic Acids Res 2004 Jan;32(Database issue):D377-82

Beijing Genomics Institute (BGI), Chinese Academy of Sciences (CAS), Beijing Airport Industrial Zone-B6, Beijing 101300, China.

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http://dx.doi.org/10.1093/nar/gkh085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308819PMC
January 2004

RePS: a sequence assembler that masks exact repeats identified from the shotgun data.

Genome Res 2002 May;12(5):824-31

Hangzhou Genomics Institute, Institute of Bioinformatics of Zhejiang University, Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China.

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http://dx.doi.org/10.1101/gr.165102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186573PMC
May 2002