Pedro G Ferreira

Pedro G Ferreira

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Pedro G Ferreira

Pedro G Ferreira

Publications by authors named "Pedro G Ferreira"

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31Publications

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Deep learning for drug response prediction in cancer.

Brief Bioinform 2020 Jan 17. Epub 2020 Jan 17.

Department of Informatics and a Senior Researcher of the Centre of Biological Engineering at the University of Minho.

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http://dx.doi.org/10.1093/bib/bbz171DOI Listing
January 2020

Time-dependent genetic effects on gene expression implicate aging processes.

Genome Res 2017 04 16;27(4):545-552. Epub 2017 Mar 16.

Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1101/gr.207688.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378173PMC
April 2017

Spatiotemporal Control of Forkhead Binding to DNA Regulates the Meiotic Gene Expression Program.

Cell Rep 2016 Feb 21;14(4):885-895. Epub 2016 Jan 21.

Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona 08003, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.12.074DOI Listing
February 2016

A novel immunodeficiency syndrome as a rare cause of secondary pulmonary alveolar proteinosis: a diagnosis after 5 decades.

Rev Port Pneumol 2014 Sep-Oct;20(5):273-8. Epub 2014 Apr 13.

Pulmonology Department, Coimbra Hospital and University Centre, Coimbra, Portugal.

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https://linkinghub.elsevier.com/retrieve/pii/S08732159140001
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http://dx.doi.org/10.1016/j.rppneu.2013.08.006DOI Listing
May 2015

Human genomics. The human transcriptome across tissues and individuals.

Science 2015 May;348(6235):660-5

Center for Genomic Regulation (CRG), Barcelona, Catalonia, Spain. Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain. Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), Barcelona, Catalonia, Spain. Joint CRG-Barcelona Super Computing Center (BSC)-Institut de Recerca Biomedica (IRB) Program in Computational Biology, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1126/science.aaa0355DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547472PMC
May 2015

Short term exposure of beta cells to low concentrations of interleukin-1β improves insulin secretion through focal adhesion and actin remodeling and regulation of gene expression.

J Biol Chem 2015 Mar 13;290(10):6653-69. Epub 2015 Jan 13.

From the Department of Genetic Medicine and Development, University Medical Centre, University of Geneva, 1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1074/jbc.M114.611111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4358297PMC
March 2015

Biased allelic expression in human primary fibroblast single cells.

Am J Hum Genet 2015 Jan 31;96(1):70-80. Epub 2014 Dec 31.

Department of Genetic Medicine and Development, University of Geneva, 1211 Geneva, Switzerland; Institute of Genetics and Genomics of Geneva, 1211 Geneva, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, 1211 Geneva, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.12.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289680PMC
January 2015

Putative cis-regulatory drivers in colorectal cancer.

Nature 2014 Aug 23;512(7512):87-90. Epub 2014 Jul 23.

1] Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland [2] Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, 1211 Geneva, Switzerland [3] Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1038/nature13602DOI Listing
August 2014

Identification of genetic variants associated with alternative splicing using sQTLseekeR.

Nat Commun 2014 Aug 20;5:4698. Epub 2014 Aug 20.

1] Center for Genomic Regulation, Universitat Pompeu Fabra, C/ Dr Aiguader 88 08003, Barcelona, Catalonia, Spain [2] Department of Experimental and Health Sciences, Universitat Pompeu Fabra 08003, Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1038/ncomms5698DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143934PMC
August 2014

Tensor interpretation of BICEP2 results severely constrains axion dark matter.

Phys Rev Lett 2014 Jul 2;113(1):011801. Epub 2014 Jul 2.

Astrophysics, University of Oxford, DWB, Keble Road, Oxford OX1 3RH, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevLett.113.011801DOI Listing
July 2014

Cosmology on ultralarge scales with intensity mapping of the neutral hydrogen 21 cm emission: limits on primordial non-Gaussianity.

Phys Rev Lett 2013 Oct 22;111(17):171302. Epub 2013 Oct 22.

CENTRA, Instituto Superior Técnico, Universidade de Lisboa, Avenida Rovisco Pais 1, 1049-001 Lisboa, Portugal and Department of Physics, University of the Western Cape, Bellville 7535, South Africa.

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http://dx.doi.org/10.1103/PhysRevLett.111.171302DOI Listing
October 2013

Immune response is a personal matter.

Elife 2013 Jul 16;2:e00899. Epub 2013 Jul 16.

is at the Department of Genetic Medicine and Development , University of Geneva Medical School , Geneva , Switzerland , the Institute of Genetics and Genomics in Geneva , Geneva , Switzerland , and the Swiss Institute of Bioinformatics , Geneva , Switzerland

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http://dx.doi.org/10.7554/eLife.00899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713457PMC
July 2013

CPEB1 coordinates alternative 3'-UTR formation with translational regulation.

Nature 2013 Mar 24;495(7439):121-5. Epub 2013 Feb 24.

Institute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/nature11901DOI Listing
March 2013

A new golden age: testing general relativity with cosmology.

Philos Trans A Math Phys Eng Sci 2011 Dec;369(1957):4941-6

Department of Astronomy, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1098/rsta.2011.0366DOI Listing
December 2011

Eddington's theory of gravity and its progeny.

Phys Rev Lett 2010 Jul 2;105(1):011101. Epub 2010 Jul 2.

P. Universidad Católica de Chile, Avenida Vicuna Mackenna 4860, Santiago, Chile and Astrophysics, University of Oxford, DWB, Keble Road, Oxford, OX1 3RH, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevLett.105.011101DOI Listing
July 2010

Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus).

BMC Evol Biol 2010 Jun 28;10:200. Epub 2010 Jun 28.

Instituto de Biologia Molecular e Celular, University of Porto, Rua do Campo Alegre 823, 4150-180 Porto, Portugal.

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http://dx.doi.org/10.1186/1471-2148-10-200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909234PMC
June 2010

Mitotic cell-cycle progression is regulated by CPEB1 and CPEB4-dependent translational control.

Nat Cell Biol 2010 May 4;12(5):447-56. Epub 2010 Apr 4.

Gene Regulation Program, Centre for Genomic Regulation (CRG), 08003 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncb2046DOI Listing
May 2010

Einstein's theory of gravity and the problem of missing mass.

Science 2009 Nov;326(5954):812-5

Department of Astrophysics, University of Oxford, Keble Road, Oxford OX2 7LG, UK.

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http://dx.doi.org/10.1126/science.1172245DOI Listing
November 2009

Does dark energy really exist?

Sci Am 2009 Apr;300(4):48-55

University of Oxford.

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http://dx.doi.org/10.1038/scientificamerican0409-48DOI Listing
April 2009

Living in a void: testing the Copernican principle with distant supernovae.

Phys Rev Lett 2008 Sep 26;101(13):131302. Epub 2008 Sep 26.

Department of Physics, Oxford Astrophysics, DWB, Keble Road, Oxford, OX1 3RH, United Kingdom.

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https://link.aps.org/doi/10.1103/PhysRevLett.101.131302
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http://dx.doi.org/10.1103/PhysRevLett.101.131302DOI Listing
September 2008