Paulino Gomez-Puertas

Paulino Gomez-Puertas

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Paulino Gomez-Puertas

Paulino Gomez-Puertas

Publications by authors named "Paulino Gomez-Puertas"

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MEPSAnd: Minimum Energy Path Surface Analysis over n-dimensional surfaces.

Bioinformatics 2019 Aug 16. Epub 2019 Aug 16.

Molecular Modelling Group, Centro de Biología Molecular Severo Ochoa, CBMSO (Consejo Superior de Investigaciones Científicas - Universidad Autónoma de Madrid, CSIC-UAM), CL Nicolás Cabrera, 1, E-28049 Madrid, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btz649DOI Listing
August 2019

A novel RAD21 p.(Gln592del) variant expands the clinical description of Cornelia de Lange syndrome type 4 - Review of the literature.

Eur J Med Genet 2019 Jun 17;62(6):103526. Epub 2018 Aug 17.

Department of Immunology, Genetics and Pathology, Uppsala University, Science for Life Laboratory, 75108, Uppsala, Sweden. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S17697212183018
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http://dx.doi.org/10.1016/j.ejmg.2018.08.007DOI Listing
June 2019

Identification of temperature-sensitive mutations and characterization of thermolabile RNase II variants.

FEBS Lett 2019 02 28;593(3):352-360. Epub 2018 Dec 28.

Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.

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http://dx.doi.org/10.1002/1873-3468.13313DOI Listing
February 2019

Population structure of OXA-48-producing Klebsiella pneumoniae ST405 isolates during a hospital outbreak characterised by genomic typing.

J Glob Antimicrob Resist 2018 Dec 22;15:48-54. Epub 2018 Jun 22.

Servicio de Microbiología, Hospital Universitario La Paz, IdiPAZ, Paseo de la Castellana 261, 28046 Madrid, Spain; Red Española de Investigación en Patología Infecciosa (REIPI), Spain. Electronic address:

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http://dx.doi.org/10.1016/j.jgar.2018.06.008DOI Listing
December 2018

Human Mitochondrial HMG-CoA Synthase Deficiency: Role of Enzyme Dimerization Surface and Characterization of Three New Patients.

Int J Mol Sci 2018 Mar 28;19(4). Epub 2018 Mar 28.

Unit of Clinical Genetics and Functional Genomics, Department of Pharmacology-Physiology, School of Medicine, University of Zaragoza, CIBERER-GCV02 and ISS-Aragon, E-50009 Zaragoza, Spain.

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http://dx.doi.org/10.3390/ijms19041010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5979369PMC
March 2018

A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases.

Sci Rep 2017 06 1;7(1):2648. Epub 2017 Jun 1.

Metabolic Engineering Group, Dpto. Microbiología y Genética, Universidad de Salamanca, Campus Miguel de Unamuno, 37007, Salamanca, Spain.

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http://www.nature.com/articles/s41598-017-02805-x
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http://dx.doi.org/10.1038/s41598-017-02805-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5454003PMC
June 2017

Quantum Mechanics/Molecular Mechanics Free Energy Maps and Nonadiabatic Simulations for a Photochemical Reaction in DNA: Cyclobutane Thymine Dimer.

J Phys Chem Lett 2016 Nov 25;7(21):4391-4397. Epub 2016 Oct 25.

Departamento de Física Teórica de la Materia Condensada and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid , ES-28049 Madrid, Spain.

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http://dx.doi.org/10.1021/acs.jpclett.6b02168DOI Listing
November 2016

In vivo functional and molecular characterization of the Penicillin-Binding Protein 4 (DacB) of Pseudomonas aeruginosa.

BMC Microbiol 2016 10 6;16(1):234. Epub 2016 Oct 6.

Laboratorio de División Celular Bacteriana y Resistencia a Antibióticos, Centro de Biología Molecular "Severo Ochoa", Universidad Autónoma de Madrid-CSIC, Madrid, Spain.

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http://dx.doi.org/10.1186/s12866-016-0853-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054556PMC
October 2016

A Practical Quantum Mechanics Molecular Mechanics Method for the Dynamical Study of Reactions in Biomolecules.

Adv Protein Chem Struct Biol 2015 15;100:67-88. Epub 2015 Jul 15.

Molecular Modelling Group, Center of Molecular Biology "Severo Ochoa" (CSIC-UAM), Madrid, Spain; Biomol-Informatics SL, Campus UAM, Madrid, Spain.

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https://linkinghub.elsevier.com/retrieve/pii/S18761623150003
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http://dx.doi.org/10.1016/bs.apcsb.2015.06.003DOI Listing
July 2016

Comparing molecular dynamics force fields in the essential subspace.

PLoS One 2015 26;10(3):e0121114. Epub 2015 Mar 26.

Structural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0121114PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4374674PMC
February 2016

Molecular basis of the association of H208Y and thymidine analogue resistance mutations M41L, L210W and T215Y in the HIV-1 reverse transcriptase of treated patients.

Antiviral Res 2014 Jun 22;106:42-52. Epub 2014 Mar 22.

Centro de Biología Molecular "Severo Ochoa" (Consejo Superior de Investigaciones Científicas & Universidad Autónoma de Madrid), Madrid, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.antiviral.2014.03.004DOI Listing
June 2014

fireball/amber: An Efficient Local-Orbital DFT QM/MM Method for Biomolecular Systems.

J Chem Theory Comput 2014 May;10(5):2185-93

Departamento de Física Teórica de la Materia Condensada and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid , ES-28049 Madrid, Spain.

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http://dx.doi.org/10.1021/ct500033wDOI Listing
May 2014

Torsion and curvature of FtsZ filaments.

Soft Matter 2014 Mar;10(12):1977-86

Departamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, E-28049 Madrid, Spain.

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http://dx.doi.org/10.1039/c3sm52516cDOI Listing
March 2014

Analysis of aberrant splicing and nonsense-mediated decay of the stop codon mutations c.109G>T and c.504_505delCT in 7 patients with HMG-CoA lyase deficiency.

Mol Genet Metab 2013 Apr 4;108(4):232-40. Epub 2013 Feb 4.

Unit of Clinical Genetics and Functional Genomics, Department of Pharmacology-Physiology, School of Medicine, University of Zaragoza, E-50009 Zaragoza, Spain.

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http://dx.doi.org/10.1016/j.ymgme.2013.01.019DOI Listing
April 2013

Ddi1-like protein from Leishmania major is an active aspartyl proteinase.

Cell Stress Chaperones 2013 Mar 30;18(2):171-81. Epub 2012 Aug 30.

Servicio de Parasitología, Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, 28220 Madrid, Spain.

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http://dx.doi.org/10.1007/s12192-012-0368-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3581629PMC
March 2013

Simulation of catalytic water activation in mitochondrial F1-ATPase using a hybrid quantum mechanics/molecular mechanics approach: an alternative role for β-Glu 188.

Biochemistry 2013 Feb 25;52(5):959-66. Epub 2013 Jan 25.

Molecular Modelling Group, Centro de Biología Molecular Severo Ochoa (CSIC-UAM), C/Nicolás Cabrera 1, Cantoblanco, Madrid, Spain.

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http://dx.doi.org/10.1021/bi301109xDOI Listing
February 2013

The only exoribonuclease present in Haloferax volcanii has an unique response to temperature changes.

Biochim Biophys Acta 2012 Oct 15;1820(10):1543-52. Epub 2012 Jun 15.

Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av da República, 2780-157 Oeiras, Portugal.

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http://dx.doi.org/10.1016/j.bbagen.2012.06.009DOI Listing
October 2012

Characterization of a novel HMG-CoA lyase enzyme with a dual location in endoplasmic reticulum and cytosol.

J Lipid Res 2012 Oct 30;53(10):2046-56. Epub 2012 Jul 30.

Unit of Clinical Genetics and Functional Genomics, Department of Pharmacology and Physiology, School of Medicine, University of Zaragoza, Spain.

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http://dx.doi.org/10.1194/jlr.M025700DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435538PMC
October 2012

Surface-Enhanced Raman scattering-based detection of the interactions between the essential cell division FtsZ protein and bacterial membrane elements.

ACS Nano 2012 Aug 27;6(8):7514-20. Epub 2012 Jul 27.

Centro de Investigaciones Biológicas, CSIC, c/Ramiro de Maeztu 9, 28040 Madrid, Spain.

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http://dx.doi.org/10.1021/nn302825uDOI Listing
August 2012

Characterization of splice variants of the genes encoding human mitochondrial HMG-CoA lyase and HMG-CoA synthase, the main enzymes of the ketogenesis pathway.

Mol Biol Rep 2012 Apr 28;39(4):4777-85. Epub 2011 Sep 28.

Unit of Clinical Genetics and Functional Genomics, Departments of Pharmacology-Physiology and Pediatrics, School of Medicine, University of Zaragoza, C/Domingo Miral s/n, 50009, Zaragoza, Spain.

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http://dx.doi.org/10.1007/s11033-011-1270-8DOI Listing
April 2012

Molecular dynamics analysis of conformational change of paramyxovirus F protein during the initial steps of membrane fusion.

Biochem Biophys Res Commun 2012 Mar 28;420(1):42-7. Epub 2012 Feb 28.

Centro de Biología Molecular Severo Ochoa (CSIC/UAM), C/ Nicolás Cabrera, 1, Cantoblanco, 28049 Madrid, Spain.

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http://dx.doi.org/10.1016/j.bbrc.2012.02.112DOI Listing
March 2012

The Role of Gln61 in HRas GTP hydrolysis: a quantum mechanics/molecular mechanics study.

Biophys J 2012 Jan 3;102(1):152-7. Epub 2012 Jan 3.

Centro de Biología Molecular Severo Ochoa (Consejo Superior de Investigaciones Cientificas-Universidad Autónoma de Madrid), Madrid, Spain.

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http://dx.doi.org/10.1016/j.bpj.2011.11.4005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3250681PMC
January 2012

Technical phosphoproteomic and bioinformatic tools useful in cancer research.

J Clin Bioinforma 2011 Oct 3;1:26. Epub 2011 Oct 3.

Servicio de Digestivo, Hospital Universitario 12 Octubre, Avda de Córdoba s/n Madrid, 28041, Spain.

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http://dx.doi.org/10.1186/2043-9113-1-26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3195713PMC
October 2011

Swapping the domains of exoribonucleases RNase II and RNase R: conferring upon RNase II the ability to degrade ds RNA.

Proteins 2011 Jun 4;79(6):1853-67. Epub 2011 Apr 4.

Instituto de Tecnologia Química e Biológica/Universidade Nova de Lisboa, Apartado 127, 2781-901 Oeiras, Portugal.

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http://dx.doi.org/10.1002/prot.23010DOI Listing
June 2011

Nanomechanics of the cadherin ectodomain: "canalization" by Ca2+ binding results in a new mechanical element.

J Biol Chem 2011 Mar 22;286(11):9405-18. Epub 2010 Dec 22.

Instituto Cajal/Consejo Superior de Investigaciones Científicas, Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), and Instituto Madrileño de Estudios Avanzados Nanociencia, Avenida Doctor Arce 37, E-28002 Madrid, Spain.

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http://dx.doi.org/10.1074/jbc.M110.170399DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3058956PMC
March 2011

The African swine fever virus lectin EP153R modulates the surface membrane expression of MHC class I antigens.

Arch Virol 2011 Feb 11;156(2):219-34. Epub 2010 Nov 11.

Centro de Biología Molecular Severo Ochoa (C.S.I.C.-U.A.M.), Consejo Superior de Investigaciones Cientificas, Universidad Autónoma de Madrid, Madrid, Spain.

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http://dx.doi.org/10.1007/s00705-010-0846-2DOI Listing
February 2011

Neutralization of human respiratory syncytial virus infectivity by antibodies and low-molecular-weight compounds targeted against the fusion glycoprotein.

J Virol 2010 Aug 9;84(16):7970-82. Epub 2010 Jun 9.

Laboratorio de Biología Viral, Centro Nacional de Microbiología and CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Majadahonda, 28220 Madrid, Spain.

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http://dx.doi.org/10.1128/JVI.00447-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916552PMC
August 2010

Strong FtsZ is with the force: mechanisms to constrict bacteria.

Trends Microbiol 2010 Aug 1;18(8):348-56. Epub 2010 Jul 1.

Unidad de Investigación y Servicio de Microbiología, Hospital Universitario La Paz (IdiPAZ), Paseo de La Castellana, 261, 28046 Madrid, Spain.

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http://dx.doi.org/10.1016/j.tim.2010.06.001DOI Listing
August 2010

Determination of key residues for catalysis and RNA cleavage specificity: one mutation turns RNase II into a "SUPER-ENZYME".

J Biol Chem 2009 Jul 19;284(31):20486-98. Epub 2009 May 19.

Instituto de Tecnologia Química e Biológica/Universidade Nova de Lisboa, 2781-901 Oeiras, Portugal.

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http://dx.doi.org/10.1074/jbc.M109.020693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742813PMC
July 2009

The structure of CCT-Hsc70 NBD suggests a mechanism for Hsp70 delivery of substrates to the chaperonin.

Nat Struct Mol Biol 2008 Aug 27;15(8):858-64. Epub 2008 Jul 27.

Centro Nacional de Biotecnología, CSIC, Campus de la Universidad Autónoma de Madrid, Darwin, 3, 28049 Madrid, Spain.

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http://www.nature.com/articles/nsmb.1464
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http://dx.doi.org/10.1038/nsmb.1464DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4449276PMC
August 2008

New insights into the mechanism of RNA degradation by ribonuclease II: identification of the residue responsible for setting the RNase II end product.

J Biol Chem 2008 May 12;283(19):13070-6. Epub 2008 Mar 12.

Instituto de Tecnologia Química e Biológica/Universidade Nova de Lisboa, Apartado 127, 2781-901 Oeiras, Portugal.

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http://www.jbc.org/content/283/19/13070.full.pdf
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http://www.jbc.org/cgi/doi/10.1074/jbc.M709989200
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http://dx.doi.org/10.1074/jbc.M709989200DOI Listing
May 2008

Residues in human respiratory syncytial virus P protein that are essential for its activity on RNA viral synthesis.

Virus Res 2008 Mar 7;132(1-2):160-73. Epub 2008 Jan 7.

Instituto de Salud Carlos III, Ctra. Majadahonda, Madrid 28220, Spain.

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http://dx.doi.org/10.1016/j.virusres.2007.11.013DOI Listing
March 2008

Molecular genetics of HMG-CoA lyase deficiency.

Mol Genet Metab 2007 Nov 9;92(3):198-209. Epub 2007 Aug 9.

Laboratory of Clinical Genetics and Functional Genomics, University of Zaragoza Medical School, E-50009 Zaragoza, Spain.

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http://dx.doi.org/10.1016/j.ymgme.2007.06.020DOI Listing
November 2007

Definition by functional and structural analysis of two malonyl-CoA sites in carnitine palmitoyltransferase 1A.

J Biol Chem 2007 Jun 23;282(25):18212-24. Epub 2007 Apr 23.

Centro de Biología Molecular Severo Ochoa (Consejo Superior de Investigaciones Científicas-Universidad Autónoma de Madrid), Cantoblanco, E-28049 Madrid, Spain.

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http://dx.doi.org/10.1074/jbc.M700885200DOI Listing
June 2007

C-terminal end and aminoacid Lys48 in HMG-CoA lyase are involved in substrate binding and enzyme activity.

Mol Genet Metab 2007 Jun 24;91(2):120-7. Epub 2007 Apr 24.

Department of Biochemistry and Molecular Biology, School of Health Sciences, Universitat Internacional de Catalunya, E-08195 Sant Cugat, Barcelona, Spain.

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http://dx.doi.org/10.1016/j.ymgme.2007.03.007DOI Listing
June 2007

Control of the respiratory metabolism of Thermus thermophilus by the nitrate respiration conjugative element NCE.

Mol Microbiol 2007 May;64(3):630-46

Centro de Biología Molecular Severo Ochoa, Departamento de Biología Molecular, Universidad Autónoma de Madrid, Madrid 28049, Spain.

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http://dx.doi.org/10.1111/j.1365-2958.2007.05687.xDOI Listing
May 2007

Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold.

Structure 2007 Apr;15(4):461-72

Department of Structure of Macromolecules, Centro Nacional de Biotecnología, CSIC, C/Darwin 3, Cantoblanco, 28049 Madrid, Spain.

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http://dx.doi.org/10.1016/j.str.2007.03.004DOI Listing
April 2007

Ca2+ Activation kinetics of the two aspartate-glutamate mitochondrial carriers, aralar and citrin: role in the heart malate-aspartate NADH shuttle.

J Biol Chem 2007 Mar 9;282(10):7098-106. Epub 2007 Jan 9.

Departamento de Biología Molecular, Universidad Autónoma de Madrid, C.S.I.C., 28049 Madrid, Spain.

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http://dx.doi.org/10.1074/jbc.M610491200DOI Listing
March 2007

Divergent substrate-binding mechanisms reveal an evolutionary specialization of eukaryotic prefoldin compared to its archaeal counterpart.

Structure 2007 Jan;15(1):101-10

Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus de la Universidad Autónoma de Madrid, Darwin 3, 28049 Madrid, Spain.

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http://dx.doi.org/10.1016/j.str.2006.11.006DOI Listing
January 2007

Mutational spectrum of maple syrup urine disease in Spain.

Hum Mutat 2006 Jul;27(7):715

Departamento de Biología Molecular, Centro de Biología Molecular Severo Ochoa CSIC-UAM, Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid, Spain.

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http://dx.doi.org/10.1002/humu.9428DOI Listing
July 2006

Mutagenesis of specific amino acids converts carnitine acetyltransferase into carnitine palmitoyltransferase.

Biochemistry 2006 May;45(19):6133-41

Department of Biochemistry and Molecular Biology, School of Pharmacy, University of Barcelona, E-08028 Spain.

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http://dx.doi.org/10.1021/bi0602664DOI Listing
May 2006

Novel effect of C75 on carnitine palmitoyltransferase I activity and palmitate oxidation.

Biochemistry 2006 Apr;45(14):4339-50

Department of Biochemistry and Molecular Biology, School of Pharmacy, University of Barcelona, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1021/bi052186qDOI Listing
April 2006

Computational approaches to model ligand selectivity in drug design.

Curr Top Med Chem 2006 ;6(1):41-55

Bioinformatics Unit, Centro de Biologia Molecular Severo Ochoa (CSIC-UAM) Cantoblanco, 28049 Madrid, Spain.

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March 2006

Kinetic and stability analysis of PKU mutations identified in BH4-responsive patients.

Mol Genet Metab 2005 Dec 8;86 Suppl 1:S11-6. Epub 2005 Aug 8.

Centro de Biología Molecular Severo Ochoa, CSIC-Universidad Autónoma de Madrid, 28049 Madrid, Spain.

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http://dx.doi.org/10.1016/j.ymgme.2005.06.009DOI Listing
December 2005

Scoring docking models with evolutionary information.

Proteins 2005 Aug;60(2):275-80

Protein Design Group, CNB-CSIC, Cantoblanco, Madrid, Spain.

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http://dx.doi.org/10.1002/prot.20570DOI Listing
August 2005

The substrate recognition mechanisms in chaperonins.

J Mol Recognit 2004 Mar-Apr;17(2):85-94

Centro de Astrobiología (CSIC/INTA). Ctra Torrejon-Ajalvir, Km 4, Torrejón de Ardoz, 28850 Madrid, Spain.

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http://dx.doi.org/10.1002/jmr.654DOI Listing
October 2004

Redesign of carnitine acetyltransferase specificity by protein engineering.

J Biol Chem 2004 Aug 21;279(32):33899-908. Epub 2004 May 21.

Department of Biochemistry and Molecular Biology, School of Pharmacy, University of Barcelona, Diagonal 643, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1074/jbc.M402685200DOI Listing
August 2004

Structural model of carnitine palmitoyltransferase I based on the carnitine acetyltransferase crystal.

Biochem J 2004 May;379(Pt 3):777-84

Department of Biochemistry and Molecular Biology, School of Pharmacy, University of Barcelona, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1042/BJ20031373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1224103PMC
May 2004

TRAF family proteins link PKR with NF-kappa B activation.

Mol Cell Biol 2004 May;24(10):4502-12

Department of Molecular and Cellular Biology, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, Campus Universidad Autónoma, 28049 Madrid, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC400457PMC
http://dx.doi.org/10.1128/mcb.24.10.4502-4512.2004DOI Listing
May 2004

Structure and function of a protein folding machine: the eukaryotic cytosolic chaperonin CCT.

FEBS Lett 2002 Oct;529(1):11-6

Centro Nacional de Biotecnologi;a, C.S.I.C., Campus Universidad Autónoma de Madrid, 28049, Madrid, Spain.

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http://dx.doi.org/10.1016/s0014-5793(02)03180-0DOI Listing
October 2002

Structural model of a malonyl-CoA-binding site of carnitine octanoyltransferase and carnitine palmitoyltransferase I: mutational analysis of a malonyl-CoA affinity domain.

J Biol Chem 2002 Mar 14;277(13):11473-80. Epub 2002 Jan 14.

Department of Biochemistry and Molecular Biology, School of Pharmacy, University of Barcelona, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1074/jbc.M111628200DOI Listing
March 2002