Publications by authors named "Paul N Schofield"

81Publications

DDIEM: drug database for inborn errors of metabolism.

Orphanet J Rare Dis 2020 06 11;15(1):146. Epub 2020 Jun 11.

Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955, Kingdom of Saudi Arabia.

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June 2020

Ontology-based prediction of cancer driver genes.

Sci Rep 2019 11 22;9(1):17405. Epub 2019 Nov 22.

Computer, Electrical and Mathematical Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.

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November 2019

PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research.

Sci Data 2019 Jun 3;6(1):79. Epub 2019 Jun 3.

Computer, Electrical and Mathematical Sciences & Engineering with Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.

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June 2019

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies.

Sci Rep 2019 03 11;9(1):4025. Epub 2019 Mar 11.

King Abdullah University of Science and Technology, Computer, Electrical & Mathematical Sciences and Engineering Division, Computational Bioscience Research Center, Thuwal, 23955-6900, Saudi Arabia.

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March 2019

DeepPVP: phenotype-based prioritization of causative variants using deep learning.

BMC Bioinformatics 2019 Feb 6;20(1):65. Epub 2019 Feb 6.

Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Kingdom of Saudi Arabia.

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February 2019

SURVEY ON DATA MANAGEMENT IN RADIATION PROTECTION RESEARCH.

Radiat Prot Dosimetry 2019 May;183(1-2):233-236

Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge, United Kingdom.

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May 2019

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals.

ILAR J 2018 12;59(1):29-39

Susan A. Elmore, MS, DVM, DCVP, DABT, FIATP, is NTP Pathologist and Staff Scientist at the National Toxicology Program, National Institute of Environmental Health Sciences in the Research Triangle Park, North Carolina. Robert D. Cardiff, MD, PhD, is Distinguished Professor of Pathology, Emeritus at the UCD Center for Comparative Medicine, University of California, and the Department of Pathology and Laboratory Medicine, School of Medicine, Davis, in Davis, California. Mark F. Cesta, DVM, PhD, DACVP, is NTP Pathologist and Staff Scientist, leading the effort for establishment of the online NTP Nonneoplastic Lesion Atlas at the National Toxicology Program, National Institute of Environmental Health Sciences in the Research Triangle Park, North Carolina. Georgios V. Gkoutos, PhD, DIC, is Professor of Clinical Bioinformatics at College of Medical and Dental Sciences, Institute of Cancer and Genomic Sciences Centre for Computational Biology, University of Birmingham in Birmingham, United Kingdom. Robert Hoehndorf, PhD, is Assistant Professor in Computer Science at the Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology in Thuwal, Kingdom of Saudi Arabia. Charlotte M. Keenan, VMD, DACVP, is a principle consultant at C.M. ToxPath Consulting in Doylestown, Pennsylvania, USA and leads the international STP effort for the publication of the harmonization of nomenclature and diagnostic criteria (INHAND) in toxicologic pathology. Colin McKerlie, DVM, DVSc, MRCVS, is a senior associate scientist in the Translational Medicine Research Program at The Hospital for Sick Children and a Professor in the Department of Pathobiology & Laboratory Medicine in the Faculty of Medicine at the University of Toronto, Toronto, Ontario, Canada. Paul N. Schofield, MA DPhil, is the University Reader in Biomedical Informatics at the Department of Physiology, Development & Neuroscience, University of Cambridge in Cambridge, United Kingdom and is also an adjunct professor at The Jackson Laboratory in Bar Harbor, Maine. John P. Sundberg, DVM, PhD, DACVP, is a professor at The Jackson Laboratory in Bar Harbor, Maine. Jerrold M. Ward, DVM, PhD, DACVP, FIATP, is a special volunteer at the National Cancer Institute, National Institutes of Health in Bethesda, MD and is also Adjunct Faculty at The Jackson Laboratory in Bar Harbor, Maine.

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December 2018

Ontology-based validation and identification of regulatory phenotypes.

Bioinformatics 2018 09;34(17):i857-i865

Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Centre, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

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September 2018

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants.

Sci Rep 2018 10 2;8(1):14681. Epub 2018 Oct 2.

Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

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October 2018

Living inside the box: environmental effects on mouse models of human disease.

Dis Model Mech 2018 10 1;11(10). Epub 2018 Oct 1.

The Jackson Laboratory, Bar Harbor, ME 04609-1500, USA.

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October 2018

Integrating phenotype ontologies with PhenomeNET.

J Biomed Semantics 2017 Dec 19;8(1):58. Epub 2017 Dec 19.

Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, 4700 KAUST, Thuwal, 23955-6900, Saudi Arabia.

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December 2017

Evolving paradigms for the biological response to low dose ionizing radiation; the role of epigenetics.

Int J Radiat Biol 2018 08 1;94(8):769-781. Epub 2017 Dec 1.

a Department of Physiology, Development, and Neuroscience , University of Cambridge , Cambridge , UK.

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August 2018