Paul M Gordon

Paul M K Gordon

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Paul M Gordon

Paul M K Gordon

Publications by authors named "Paul M K Gordon"

27Publications

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1PubMed Central Citations

A shared core microbiome in soda lakes separated by large distances.

Nat Commun 2019 09 17;10(1):4230. Epub 2019 Sep 17.

Department of Geoscience, University of Calgary, Calgary, AB, T2N 1N4, Canada.

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http://dx.doi.org/10.1038/s41467-019-12195-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748926PMC
September 2019

Characterization of a Unique Form of Arrhythmic Cardiomyopathy Caused by Recessive Mutation in LEMD2.

JACC Basic Transl Sci 2019 Apr 29;4(2):204-221. Epub 2019 Apr 29.

Department of Cardiac Sciences, Libin Cardiovascular Institute of Alberta, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1016/j.jacbts.2018.12.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488817PMC
April 2019

Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells.

BMC Med Genomics 2019 01 31;12(1):29. Epub 2019 Jan 31.

Airways Inflammation Research Group, Snyder Institute for Chronic Diseases, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1186/s12920-018-0467-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357449PMC
January 2019

An Algorithm Measuring Donor Cell-Free DNA in Plasma of Cellular and Solid Organ Transplant Recipients That Does Not Require Donor or Recipient Genotyping.

Front Cardiovasc Med 2016 22;3:33. Epub 2016 Sep 22.

Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, Canada; Department of Paediatrics, University of Calgary, Calgary, AB, Canada; Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada; Department of Cardiac Sciences, Libin Cardiovascular Institute of Alberta, University of Calgary, Calgary, AB, Canada.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031701PMC
http://dx.doi.org/10.3389/fcvm.2016.00033DOI Listing
September 2016

SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models.

BMC Bioinformatics 2014 Jul 1;15:229. Epub 2014 Jul 1.

Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke St, W, Montreal, QC H4B 1R6, Canada.

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http://dx.doi.org/10.1186/1471-2105-15-229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4084796PMC
July 2014

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:
Catherine A Brownstein Alan H Beggs Nils Homer Barry Merriman Timothy W Yu Katherine C Flannery Elizabeth T DeChene Meghan C Towne Sarah K Savage Emily N Price Ingrid A Holm Lovelace J Luquette Elaine Lyon Joseph Majzoub Peter Neupert David McCallie Peter Szolovits Huntington F Willard Nancy J Mendelsohn Renee Temme Richard S Finkel Sabrina W Yum Livija Medne Shamil R Sunyaev Ivan Adzhubey Christopher A Cassa Paul I W de Bakker Hatice Duzkale Piotr Dworzyński William Fairbrother Laurent Francioli Birgit H Funke Monica A Giovanni Robert E Handsaker Kasper Lage Matthew S Lebo Monkol Lek Ignaty Leshchiner Daniel G MacArthur Heather M McLaughlin Michael F Murray Tune H Pers Paz P Polak Soumya Raychaudhuri Heidi L Rehm Rachel Soemedi Nathan O Stitziel Sara Vestecka Jochen Supper Claudia Gugenmus Bernward Klocke Alexander Hahn Max Schubach Mortiz Menzel Saskia Biskup Peter Freisinger Mario Deng Martin Braun Sven Perner Richard J H Smith Janeen L Andorf Jian Huang Kelli Ryckman Val C Sheffield Edwin M Stone Thomas Bair E Ann Black-Ziegelbein Terry A Braun Benjamin Darbro Adam P DeLuca Diana L Kolbe Todd E Scheetz Aiden E Shearer Rama Sompallae Kai Wang Alexander G Bassuk Erik Edens Katherine Mathews Steven A Moore Oleg A Shchelochkov Pamela Trapane Aaron Bossler Colleen A Campbell Jonathan W Heusel Anne Kwitek Tara Maga Karin Panzer Thomas Wassink Douglas Van Daele Hela Azaiez Kevin Booth Nic Meyer Michael M Segal Marc S Williams Gerard Tromp Peter White Donald Corsmeier Sara Fitzgerald-Butt Gail Herman Devon Lamb-Thrush Kim L McBride David Newsom Christopher R Pierson Alexander T Rakowsky Aleš Maver Luca Lovrečić Anja Palandačić Borut Peterlin Ali Torkamani Anna Wedell Mikael Huss Andrey Alexeyenko Jessica M Lindvall Måns Magnusson Daniel Nilsson Henrik Stranneheim Fulya Taylan Christian Gilissen Alexander Hoischen Bregje van Bon Helger Yntema Marcel Nelen Weidong Zhang Jason Sager Lu Zhang Kathryn Blair Deniz Kural Michael Cariaso Greg G Lennon Asif Javed Saloni Agrawal Pauline C Ng Komal S Sandhu Shuba Krishna Vamsi Veeramachaneni Ofer Isakov Eran Halperin Eitan Friedman Noam Shomron Gustavo Glusman Jared C Roach Juan Caballero Hannah C Cox Denise Mauldin Seth A Ament Lee Rowen Daniel R Richards F Anthony San Lucas Manuel L Gonzalez-Garay C Thomas Caskey Yu Bai Ying Huang Fang Fang Yan Zhang Zhengyuan Wang Jorge Barrera Juan M Garcia-Lobo Domingo González-Lamuño Javier Llorca Maria C Rodriguez Ignacio Varela Martin G Reese Francisco M De La Vega Edward Kiruluta Michele Cargill Reece K Hart Jon M Sorenson Gholson J Lyon David A Stevenson Bruce E Bray Barry M Moore Karen Eilbeck Mark Yandell Hongyu Zhao Lin Hou Xiaowei Chen Xiting Yan Mengjie Chen Cong Li Can Yang Murat Gunel Peining Li Yong Kong Austin C Alexander Zayed I Albertyn Kym M Boycott Dennis E Bulman Paul M K Gordon A Micheil Innes Bartha M Knoppers Jacek Majewski Christian R Marshall Jillian S Parboosingh Sarah L Sawyer Mark E Samuels Jeremy Schwartzentruber Isaac S Kohane David M Margulies

Genome Biol 2014 Mar 25;15(3):R53. Epub 2014 Mar 25.

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http://dx.doi.org/10.1186/gb-2014-15-3-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073084PMC
March 2014

Titin mutation in familial restrictive cardiomyopathy.

Int J Cardiol 2014 Jan 25;171(1):24-30. Epub 2013 Nov 25.

Heart Failure Service and Heart Institute, Tel Aviv University, Tel Aviv, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.ijcard.2013.11.037DOI Listing
January 2014

Genomic compartmentalization of gene families encoding core components of metazoan signaling systems.

Genome 2013 Apr 1;56(4):215-25. Epub 2013 Apr 1.

Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Calgary, Calgary AB T2N 4N1, Canada.

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http://dx.doi.org/10.1139/gen-2013-0021DOI Listing
April 2013

The Bluejay genome browser.

Curr Protoc Bioinformatics 2012 Mar;Chapter 10:Unit10.9

Visual Genomics Centre, Faculty of Medicine, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1002/0471250953.bi1009s37DOI Listing
March 2012

Disease-specific motifs can be identified in circulating nucleic acids from live elk and cattle infected with transmissible spongiform encephalopathies.

Nucleic Acids Res 2009 Feb 5;37(2):550-6. Epub 2008 Dec 5.

Department of Biochemistry and Molecular Biology, Faculty of Medicine, Sun Center of Excellence for Visual Genomics, University of Calgary, Calgary, AB, Canada T2N 4N1.

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http://dx.doi.org/10.1093/nar/gkn963DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2632913PMC
February 2009

Interspecies data mining to predict novel ING-protein interactions in human.

BMC Genomics 2008 Sep 18;9:426. Epub 2008 Sep 18.

Department of Biochemistry & Molecular Biology, Faculty of Medicine, University of Calgary, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1186/1471-2164-9-426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2565686PMC
September 2008

Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage.

J Bacteriol 2007 Dec 28;189(23):8708-18. Epub 2007 Sep 28.

Center of Geobiology, Dept. Biology, Jahnebakken 5, N-5020 Bergen, Norway.

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http://dx.doi.org/10.1128/JB.01016-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2168930PMC
December 2007

Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays.

Virology 2007 Aug 30;365(1):48-59. Epub 2007 Apr 30.

University of Bergen, Department of Biology, Jahnebakken 5, N-5020 Bergen, Norway.

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http://linkinghub.elsevier.com/retrieve/pii/S004268220700144
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http://dx.doi.org/10.1016/j.virol.2007.03.033DOI Listing
August 2007

Seahawk: moving beyond HTML in Web-based bioinformatics analysis.

BMC Bioinformatics 2007 Jun 18;8:208. Epub 2007 Jun 18.

University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics, Calgary, AB, Canada.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-8-208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1906838PMC
June 2007

Semantic Web Service provision: a realistic framework for Bioinformatics programmers.

Bioinformatics 2007 May 24;23(9):1178-80. Epub 2007 Mar 24.

University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics, Calgary, AB, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btm060DOI Listing
May 2007

Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides.

Eukaryot Cell 2006 Dec 27;5(12):2138-46. Epub 2006 Oct 27.

Department of Biological Sciences, the University of Calgary, Calgary, Alberta T2N 1N4, Canada.

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http://dx.doi.org/10.1128/EC.00258-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1694820PMC
December 2006

Creating hierarchical models of protein families based on Expressed Sequence Tags: the "Sprockets" analysis pipeline.

Anal Chim Acta 2006 Mar 28;564(1):123-32. Epub 2006 Feb 28.

University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics, 3330 Hospital Drive NW, Calgary, AB, Canada T2N 4N1.

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http://dx.doi.org/10.1016/j.aca.2006.01.072DOI Listing
March 2006

Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians.

Trends Genet 2005 Dec 13;21(12):633-9. Epub 2005 Oct 13.

Sars International Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgt 55, 5008 Bergen, Norway.

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http://dx.doi.org/10.1016/j.tig.2005.09.007DOI Listing
December 2005

Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.

In Silico Biol 2005 ;5(2):187-98

University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics, 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1.

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October 2005

Jabiru: harnessing Java 3D behaviors for device and display portability.

IEEE Comput Graph Appl 2005 Mar-Apr;25(2):70-80

University of Calgary.

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http://dx.doi.org/10.1109/mcg.2005.42DOI Listing
April 2005

Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays.

Nucleic Acids Res 2004 Sep 29;32(17):e133. Epub 2004 Sep 29.

Faculty of Medicine, Department of Biochemistry and Molecular Biology, Sun Center of Excellence for Visual Genomics, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gnh127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521677PMC
September 2004