Paul Kellam

Paul Kellam

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Paul Kellam

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Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles.

Sci Immunol 2019 Nov;4(41)

Laboratory of Applied Evolutionary Biology, Department of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.

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http://dx.doi.org/10.1126/sciimmunol.aay6125DOI Listing
November 2019

Protecting fetal development.

Science 2019 07;365(6449):118-119

Division of Infection and Immunity, University College London, London, UK.

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http://dx.doi.org/10.1126/science.aay2054DOI Listing
July 2019

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.

Sci Rep 2019 Jul 11;9(1):10076. Epub 2019 Jul 11.

Kenya Medical Research Institute (KEMRI)-Wellcome Trust Research Programme, Epidemiology and Demography Department, Kilifi, Kenya.

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http://dx.doi.org/10.1038/s41598-019-46509-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624209PMC
July 2019

Comparative analysis of the chicken IFITM locus by targeted genome sequencing reveals evolution of the locus and positive selection in IFITM1 and IFITM3.

BMC Genomics 2019 Apr 5;20(1):272. Epub 2019 Apr 5.

Department of Medicine, Division of Infectious Diseases, Wright Fleming Wing, St Mary's Campus, Imperial College London, Norfolk Place, London, W2 1PG, UK.

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http://dx.doi.org/10.1186/s12864-019-5621-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6451222PMC
April 2019

Mouse Models of Influenza Infection with Circulating Strains to Test Seasonal Vaccine Efficacy.

Front Immunol 2018 31;9:126. Epub 2018 Jan 31.

Mucosal Infection and Immunity Group, Section of Virology, Department of Medicine, St Mary's Campus, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.3389/fimmu.2018.00126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5797846PMC
March 2019

Virus discovery reveals frequent infection by diverse novel members of the Flaviviridae in wild lemurs.

Arch Virol 2019 Feb 20;164(2):509-522. Epub 2018 Nov 20.

Laboratory of Experimental Virology, Department of Medical Microbiology, Academic Medical Center of the University of Amsterdam, Meibergdreef 15, 1105 AZ, Amsterdam, Netherlands.

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http://dx.doi.org/10.1007/s00705-018-4099-9DOI Listing
February 2019

Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains.

Virus Evol 2018 Jul 15;4(2):vey035. Epub 2018 Dec 15.

Virus Genomics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/ve/vey035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6295324PMC
July 2018

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.

Virus Res 2017 07 4;239:10-16. Epub 2016 Aug 4.

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2016.08.004DOI Listing
July 2017

Pre/pro-B cells generate macrophage populations during homeostasis and inflammation.

Proc Natl Acad Sci U S A 2017 05 1;114(20):E3954-E3963. Epub 2017 May 1.

Centre for Clinical Pharmacology and Therapeutics, Division of Medicine, University College London, London WC1E 6JJ, United Kingdom;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1616417114
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http://dx.doi.org/10.1073/pnas.1616417114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441795PMC
May 2017

Accurate characterization of the IFITM locus using MiSeq and PacBio sequencing shows genetic variation in Galliformes.

BMC Genomics 2017 05 30;18(1):419. Epub 2017 May 30.

The Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

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http://dx.doi.org/10.1186/s12864-017-3801-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450142PMC
May 2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Nature 2017 04 12;544(7650):309-315. Epub 2017 Apr 12.

Institute of Evolutionary Biology, University of Edinburgh, King's Buildings, Edinburgh EH9 3FL, UK.

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http://dx.doi.org/10.1038/nature22040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712493PMC
April 2017

Dynamic variation of CD5 surface expression levels within individual chronic lymphocytic leukemia clones.

Exp Hematol 2017 Feb 28;46:31-37.e10. Epub 2016 Sep 28.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Research Department of Infection, Division of Infection and Immunity, University College London, London, UK. Electronic address:

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http://dx.doi.org/10.1016/j.exphem.2016.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5261558PMC
February 2017

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.

Virus Evol 2017 Jan 11;3(1):vex006. Epub 2017 Mar 11.

Epidemiology and Demography Department, Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Collaborative Programme, Kilifi, Kenya.

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http://dx.doi.org/10.1093/ve/vex006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399923PMC
January 2017

Genome Sequences of a Novel Vietnamese Bat Bunyavirus.

Genome Announc 2016 Dec 22;4(6). Epub 2016 Dec 22.

Wellcome Trust Sanger Institute, Hinxton, England.

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http://dx.doi.org/10.1128/genomeA.01366-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5180378PMC
December 2016

Resistance of Transmitted Founder HIV-1 to IFITM-Mediated Restriction.

Cell Host Microbe 2016 Oct 15;20(4):429-442. Epub 2016 Sep 15.

Department of Infectious Diseases, King's College London Faculty of Life Sciences and Medicine, Guy's Hospital, London SE1 9RT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2016.08.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075283PMC
October 2016

Alphavirus Restriction by IFITM Proteins.

Traffic 2016 09 24;17(9):997-1013. Epub 2016 Jun 24.

MRC Laboratory for Molecular Cell Biology, University College London, Gower Street, London, WC1E 6BT, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5025721PMC
http://dx.doi.org/10.1111/tra.12416DOI Listing
September 2016

Epstein-Barr virus nuclear protein EBNA3C directly induces expression of AID and somatic mutations in B cells.

J Exp Med 2016 05 23;213(6):921-8. Epub 2016 May 23.

Molecular Virology, Department of Medicine, Imperial College London, London W2 1PG, England, UK

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http://dx.doi.org/10.1084/jem.20160120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886369PMC
May 2016

Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection.

Genetics 2016 Apr 8;202(4):1449-72. Epub 2016 Feb 8.

Department of Statistics, University of Warwick, Coventry, United Kingdom Department of Computer Science, University of Warwick, Coventry, United Kingdom

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http://dx.doi.org/10.1534/genetics.115.177931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905535PMC
April 2016

A Novel Astrovirus-Like RNA Virus Detected in Human Stool.

Virus Evol 2016 Jan 2;2(1):vew005. Epub 2016 Mar 2.

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, 1105 AZ Amsterdam, the Netherlands.

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http://dx.doi.org/10.1093/ve/vew005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989881PMC
January 2016

Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management.

Sci Transl Med 2015 Sep;7(307):307rv5

Wellcome Trust Sanger Institute, Cambridge CB10 1RQ, UK. Division of Infection & Immunity, University College London, London WC1E 6BT, UK.

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http://dx.doi.org/10.1126/scitranslmed.aab0191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819730PMC
September 2015

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion.

PLoS Pathog 2015 Aug 7;11(8):e1005056. Epub 2015 Aug 7.

Vector-Borne Viral Diseases Programme, The Pirbright Institute, Pirbright, Woking, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1005056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529188PMC
August 2015

IVA: accurate de novo assembly of RNA virus genomes.

Bioinformatics 2015 Jul 28;31(14):2374-6. Epub 2015 Feb 28.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btv120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4495290PMC
July 2015

Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines.

PLoS One 2014 7;9(10):e108384. Epub 2014 Oct 7.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom; Department of Infection, Division of Infection and Immunity, University College London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0108384PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4188571PMC
June 2015

Disease progression despite protective HLA expression in an HIV-infected transmission pair.

Retrovirology 2015 Jun 30;12:55. Epub 2015 Jun 30.

Nuffield Department of Medicine, Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, OX1 3SY, UK.

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http://dx.doi.org/10.1186/s12977-015-0179-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4487201PMC
June 2015

Bat and pig IFN-induced transmembrane protein 3 restrict cell entry by influenza virus and lyssaviruses.

J Gen Virol 2015 May 22;96(Pt 5):991-1005. Epub 2015 Jan 22.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK MRC/UCL Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, London, UK.

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http://dx.doi.org/10.1099/vir.0.000058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631062PMC
May 2015

A membrane topology model for human interferon inducible transmembrane protein 1.

PLoS One 2014 8;9(8):e104341. Epub 2014 Aug 8.

MRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom; MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0104341PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4126714PMC
April 2015

Host genetics of Epstein-Barr virus infection, latency and disease.

Rev Med Virol 2015 Mar 27;25(2):71-84. Epub 2014 Nov 27.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK; Division of Biological Anthropology, Department of Archaeology and Anthropology, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1002/rmv.1816DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4407908PMC
March 2015

Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm.

PLoS One 2014 2;9(4):e93269. Epub 2014 Apr 2.

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, Amsterdam, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093269PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3973683PMC
January 2015

Identification of a novel human rhinovirus C type by antibody capture VIDISCA-454.

Viruses 2015 Jan 19;7(1):239-51. Epub 2015 Jan 19.

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, Amsterdam 1105 AZ, the Netherlands.

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http://dx.doi.org/10.3390/v7010239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306836PMC
January 2015

Novel porcine-like human G26P[19] rotavirus identified in hospitalized paediatric diarrhoea patients in Ho Chi Minh City, Vietnam.

J Gen Virol 2014 Dec 13;95(Pt 12):2727-33. Epub 2014 Aug 13.

The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, Oxford University, Oxford, UK The London School of Hygiene and Tropical Medicine, London, UK

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http://dx.doi.org/10.1099/vir.0.068403-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4233630PMC
December 2014

Molecular evolution of broadly neutralizing Llama antibodies to the CD4-binding site of HIV-1.

PLoS Pathog 2014 Dec 18;10(12):e1004552. Epub 2014 Dec 18.

Wohl Virion Centre and Medical Research Council (MRC) Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1004552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4270772PMC
December 2014

Respiratory tract samples, viral load, and genome fraction yield in patients with Middle East respiratory syndrome.

J Infect Dis 2014 Nov 15;210(10):1590-4. Epub 2014 May 15.

Global Centre for Mass Gatherings Medicine and Ministry of Health, Riyadh, Kingdom of Saudi Arabia and College of Medicine, Alfaisal University, Division of Infection and Immunity, University College London (UCL), and UCL Hospitals National Health Service Foundation Trust, United Kingdom.

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http://dx.doi.org/10.1093/infdis/jiu292DOI Listing
November 2014

Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest?

J Acquir Immune Defic Syndr 2014 Oct;67(2):181-95

*Division of Infectious Diseases, University of North Carolina at Chapel Hill, Chapel Hill, NC; †Department of Microbiology, University of Washington, Seattle, WA; ‡Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom; §Wellcome Trust Sanger Institute, Cambridge, United Kingdom; ‖Division of Infection and Immunity, University College London, London, United Kingdom; ¶Wellcome Trust-Africa Centre for Health and Population Studies, University of Kwazula-Natal, ZA; and #Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom.

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http://pdfs.journals.lww.com/jaids/2014/10010/Phylogenetic_S
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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/QAI.0000000000000271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304655PMC
October 2014

Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting.

J Virol 2014 Oct 23;88(19):11056-69. Epub 2014 Jul 23.

Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam The London School of Hygiene and Tropical Medicine, London, United Kingdom Centre for Tropical Medicine, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.1128/JVI.01333-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4178781PMC
October 2014

Evidence for camel-to-human transmission of MERS coronavirus.

N Engl J Med 2014 10;371(14):1359-60

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http://dx.doi.org/10.1056/NEJMc1409847DOI Listing
October 2014

Generation and characterization of influenza A viruses with altered polymerase fidelity.

Nat Commun 2014 Sep 3;5:4794. Epub 2014 Sep 3.

Li Ka Shing Faculty of Medicine, Centre of Influenza Research, School of Public Health, The University of Hong Kong, No. 21 Sassoon Road, Pokfulam, Hong Kong SAR, China.

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http://dx.doi.org/10.1038/ncomms5794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155405PMC
September 2014

Autologous antibody capture to enrich immunogenic viruses for viral discovery.

PLoS One 2013 4;8(11):e78454. Epub 2013 Nov 4.

Laboratory of Experimental Virology, Department of Medical Microbiology, Center for Infection and Immunity Amsterdam (CINIMA), Academic Medical Center of the University of Amsterdam, Amsterdam, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078454PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817278PMC
August 2014

Human immunodeficiency virus Tat associates with a specific set of cellular RNAs.

Retrovirology 2014 Jul 3;11:53. Epub 2014 Jul 3.

MRC Centre for Medical Molecular Virology, Division of Infection and Immunity, University College London, London WC1E 6BT, UK.

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http://dx.doi.org/10.1186/1742-4690-11-53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086691PMC
July 2014

Community case clusters of Middle East respiratory syndrome coronavirus in Hafr Al-Batin, Kingdom of Saudi Arabia: a descriptive genomic study.

Int J Infect Dis 2014 Jun 31;23:63-8. Epub 2014 Mar 31.

Saudi Aramco Medical Services Organization, Saudi Aramco, Dhahran, Kingdom of Saudi Arabia and Indiana University School of Medicine, Indianapolis, IN (USA).

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https://linkinghub.elsevier.com/retrieve/pii/S12019712140145
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http://dx.doi.org/10.1016/j.ijid.2014.03.1372DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441753PMC
June 2014

Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing.

Genome Announc 2014 Feb 6;2(1). Epub 2014 Feb 6.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://genomea.asm.org/cgi/doi/10.1128/genomeA.01254-13
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http://dx.doi.org/10.1128/genomeA.01254-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916492PMC
February 2014

A systematic review of definitions of extreme phenotypes of HIV control and progression.

AIDS 2014 Jan;28(2):149-62

aWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton bStrangeways Research Laboratory, Department of Public Health and Primary Care, University of Cambridge, Wort's Causeway, Cambridge cMedical Research Council, Clinical Trials Unit, Aviation House, London, UK dCentre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa eWellcome Trust Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford fImperial College Healthcare NHS Trust, London gCambridge University Hospitals NHS Foundation Trust, Department of Infectious Diseases, Addenbrooke's Hospital, Cambridge hKing's College London, Weston Education Centre iDivision of Infection and Immunity, University College London, London, UK.

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http://dx.doi.org/10.1097/QAD.0000000000000049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3882304PMC
January 2014

Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations.

Genome Res 2013 Nov 6;23(11):1874-84. Epub 2013 Jun 6.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom;

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http://dx.doi.org/10.1101/gr.154815.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814887PMC
November 2013

Amphotericin B increases influenza A virus infection by preventing IFITM3-mediated restriction.

Cell Rep 2013 Nov 21;5(4):895-908. Epub 2013 Nov 21.

Department of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, MA 01655, USA; Ragon Institute of Massachusetts General Hospital, M.I.T. and Harvard University, Charlestown, MA 02129, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2013.10.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3898084PMC
November 2013

Evolution of equine influenza virus in vaccinated horses.

J Virol 2013 Apr 6;87(8):4768-71. Epub 2013 Feb 6.

Medical Research Council-University of Glasgow Centre for Virus Research, Institute of Infection, Inflammation and Immunity, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.

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http://dx.doi.org/10.1128/JVI.03379-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624384PMC
April 2013

Viral population analysis and minority-variant detection using short read next-generation sequencing.

Philos Trans R Soc Lond B Biol Sci 2013 Mar 4;368(1614):20120205. Epub 2013 Feb 4.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1098/rstb.2012.0205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3678329PMC
March 2013