Paul J Planet

Paul J Planet

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Paul J Planet

Publications by authors named "Paul J Planet"

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Culture-Independent Analysis of Pediatric Bronchoalveolar Lavage Specimens.

Ann Am Thorac Soc 2018 Sep;15(9):1047-1056

1 Department of Pediatrics, Columbia University Medical Center, New York, New York.

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http://dx.doi.org/10.1513/AnnalsATS.201802-146OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322044PMC
September 2018

Management of afebrile neonates with pustules and vesicles in a pediatric emergency department.

Pediatr Dermatol 2018 Sep 4;35(5):660-665. Epub 2018 Jul 4.

Department of Pediatrics, Columbia University Medical Center, New York, NY, USA.

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http://dx.doi.org/10.1111/pde.13538DOI Listing
September 2018

Wound culture isolated antibiograms and caregiver-reported skin care practices in children with epidermolysis bullosa.

Pediatr Dermatol 2018 Jan 6;35(1):92-96. Epub 2017 Nov 6.

Department of Dermatology, College of Physicians and Surgeons, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1111/pde.13331DOI Listing
January 2018

Architecture of a Species: Phylogenomics of Staphylococcus aureus.

Trends Microbiol 2017 02 14;25(2):153-166. Epub 2016 Oct 14.

Public Health Research Institute Center, New Jersey Medical School, Rutgers, Newark, NJ, USA.

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http://dx.doi.org/10.1016/j.tim.2016.09.009DOI Listing
February 2017

Life After USA300: The Rise and Fall of a Superbug.

Authors:
Paul J Planet

J Infect Dis 2017 Feb;215(suppl_1):S71-S77

Sackler Institute for Comparative Genomics, American Museum of Natural History, New York.

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http://dx.doi.org/10.1093/infdis/jiw444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853207PMC
February 2017

A Case Report of Pediatric Brucellosis in an Algerian Immigrant.

Open Forum Infect Dis 2017 10;4(1):ofw263. Epub 2017 Feb 10.

Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1093/ofid/ofw263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414059PMC
February 2017

Global Spread of the Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Latin American Variant.

J Infect Dis 2016 11 9;214(10):1609-1610. Epub 2016 Sep 9.

Center for Antimicrobial Resistance and Microbial Genomics.

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http://dx.doi.org/10.1093/infdis/jiw418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5091374PMC
November 2016

Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets.

Gigascience 2016 10 24;5(1):44. Epub 2016 Oct 24.

Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, 10024, USA.

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http://dx.doi.org/10.1186/s13742-016-0152-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5078944PMC
October 2016

High prevalence of mupirocin resistance in Staphylococcus aureus isolates from a pediatric population.

Antimicrob Agents Chemother 2015 30;59(6):3350-6. Epub 2015 Mar 30.

Department of Dermatology, Columbia University Medical Center, New York, New York, USA Department of Pediatrics, Columbia University Medical Center, New York, New York, USA.

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http://aac.asm.org/lookup/doi/10.1128/AAC.00079-15
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http://dx.doi.org/10.1128/AAC.00079-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432188PMC
February 2016

Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection.

MBio 2016 Feb 9;7(1):e01939-15. Epub 2016 Feb 9.

Department of Pediatrics, Division of Pediatric Infectious Diseases, Columbia University, College of Physicians and Surgeons, New York, New York, USA

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http://dx.doi.org/10.1128/mBio.01939-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752601PMC
February 2016

Erratum for Antonov et al., "Erratum for Antonov et al., High Prevalence of Pupirocin Resistance in Staphylococcus aureus Isolates from a Pediatric Population".

Antimicrob Agents Chemother 2016 01 31;60(1):715. Epub 2015 Dec 31.

Department of Dermatology, Columbia University Medical Center, New York, New York, USA Department of Pediatrics, Columbia University Medical Center, New York, New York, USA.

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http://dx.doi.org/10.1128/AAC.02903-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704161PMC
January 2016

Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America.

J Infect Dis 2015 Dec 5;212(12):1874-82. Epub 2015 Jun 5.

Division of Infectious Diseases, Department of Internal Medicine Department of Microbiology and Molecular Genetics, University of Texas Medical School at Houston Molecular Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogotá, Colombia.

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http://dx.doi.org/10.1093/infdis/jiv320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4655856PMC
December 2015

Erratum for Antonov et al., high prevalence of pupirocin resistance in Staphylococcus aureus isolates from a pediatric population.

Antimicrob Agents Chemother 2015 Nov;59(11):7158

Department of Dermatology, Columbia University Medical Center, New York, New York, USA Department of Pediatrics, Columbia University Medical Center, New York, New York, USA.

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http://aac.asm.org/lookup/doi/10.1128/AAC.02220-15
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http://dx.doi.org/10.1128/AAC.02220-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604382PMC
November 2015

CD4+ T cells promote the pathogenesis of Staphylococcus aureus pneumonia.

J Infect Dis 2015 Mar 19;211(5):835-45. Epub 2014 Sep 19.

Department of Pediatrics, Columbia University.

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http://dx.doi.org/10.1093/infdis/jiu525DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402374PMC
March 2015

Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element.

Mol Microbiol 2014 Aug 16;93(4):664-81. Epub 2014 Jul 16.

Department of Microbiology, New York University School of Medicine, New York, NY, USA; Division of Infectious Diseases, Boston Children's Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1111/mmi.12682DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4127135PMC
August 2014

Transferable vancomycin resistance in a community-associated MRSA lineage.

N Engl J Med 2014 Apr;370(16):1524-31

From the Department of Pathology, Division of Microbiology of the Central Laboratory (LIM 03) and Department of Infectious Disease (LIM 54), Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, São Paulo (F.R., T.S.R.D.G., A.D., D.B., I.M.H.); Molecular Genetics and Antimicrobial Resistance Unit, Universidad El Bosque, Bogota (L.D., D.P., S.R., J.R., L.P.C., C.A.A.), and Centro Internacional de Entrenamiento e Investigaciones Medicas (CIDEIM), Cali (A.H.-R.) - both in Colombia; Clinica Alemana de Santiago, Universidad del Desarrollo, Santiago, Chile (J.M.M.); the Department of Internal Medicine, Division of Infectious Diseases (L.D., D.P., T.T.T., J.R., J.M.M., A.H.-R., B.E.M, C.A.A.), and the Department of Microbiology and Molecular Genetics (B.E.M., C.A.A.), University of Texas Medical School at Houston, and the University of Houston College of Pharmacy (T.T.T.) - both in Houston; the Genome Institute, Washington University at St. Louis, St. Louis (A.W., Y.Z., G.M.W.); and Sackler Institute for Comparative Genomics, American Museum of Natural History (A.N., P.J.P.), and Division of Pediatric Infectious Diseases, Columbia University (G.X., P.J.P.) - both in New York.

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http://dx.doi.org/10.1056/NEJMoa1303359DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112484PMC
April 2014

Induction of type I interferon signaling determines the relative pathogenicity of Staphylococcus aureus strains.

PLoS Pathog 2014 Feb 20;10(2):e1003951. Epub 2014 Feb 20.

Department of Pediatrics, Columbia University, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1003951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930619PMC
February 2014

Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1.

Genome Announc 2013 Jan 31;1(1). Epub 2013 Jan 31.

Department of Pediatrics, Columbia University, New York, New York, USA ; Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, USA.

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http://dx.doi.org/10.1128/genomeA.00117-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569275PMC
January 2013

Cigarette smoke increases Staphylococcus aureus biofilm formation via oxidative stress.

Infect Immun 2012 Nov 13;80(11):3804-11. Epub 2012 Aug 13.

Department of Pediatrics, Columbia University, New York, New York, USA.

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http://dx.doi.org/10.1128/IAI.00689-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486061PMC
November 2012

Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate.

J Bacteriol 2012 Mar;194(5):1275-6

Department of Oral Biology, New Jersey Dental School, University of Medicine & Dentistry of New Jersey, Newark, New Jersey, USA.

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http://dx.doi.org/10.1128/JB.06710-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294788PMC
March 2012

The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans.

Mol Microbiol 2012 Feb 13;83(4):694-711. Epub 2012 Jan 13.

Department of Microbiology & Immunology, College of Physicians & Surgeons, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1111/j.1365-2958.2011.07955.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3305808PMC
February 2012

A whole-genome phylogeny of the family Pasteurellaceae.

Mol Phylogenet Evol 2010 Mar 15;54(3):950-6. Epub 2009 Aug 15.

Sackler Institute of Comparative Genomics, American Museum of Natural History, 79th Street at Central Park West, New York, NY 10024, USA.

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http://dx.doi.org/10.1016/j.ympev.2009.08.010DOI Listing
March 2010

The evolution of the major hepatitis C genotypes correlates with clinical response to interferon therapy.

PLoS One 2009 Aug 11;4(8):e6579. Epub 2009 Aug 11.

Department of Medicine, Division of Infectious Diseases and Geographic Medicine and Division of Gastroenterology and Hepatology, Stanford University School of Medicine, Palo Alto, CA, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006579PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719056PMC
August 2009

Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.

J Bacteriol 2009 Jul 15;191(14):4693-4. Epub 2009 May 15.

Sackler Institute for Comparative Genetics, American Museum of Natural History, New York, NY 10024, USA.

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http://dx.doi.org/10.1128/JB.00447-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704734PMC
July 2009

caos software for use in character-based DNA barcoding.

Mol Ecol Resour 2008 Nov 14;8(6):1256-9. Epub 2008 Aug 14.

MBLWHOI Library, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA, Sackler Institute for Comparative Genomics, American Museum of Natural History, 79th Street at CPW, New York, NY 10024, USA.

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http://dx.doi.org/10.1111/j.1755-0998.2008.02235.xDOI Listing
November 2008

Outer membrane components of the Tad (tight adherence) secreton of Aggregatibacter actinomycetemcomitans.

J Bacteriol 2008 Feb 30;190(3):980-90. Epub 2007 Nov 30.

Department of Microbiology, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.

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http://jb.asm.org/content/190/3/980.full.pdf
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http://jb.asm.org/content/early/2007/11/30/JB.01347-07.full.
Web Search
http://jb.asm.org/cgi/doi/10.1128/JB.01347-07
Publisher Site
http://dx.doi.org/10.1128/JB.01347-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2223556PMC
February 2008

The tad locus: postcards from the widespread colonization island.

Nat Rev Microbiol 2007 May;5(5):363-75

Department of Microbiology, College of Physicians and Surgeons, Columbia University, 701 West 168th Street, New York 10032, USA.

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http://dx.doi.org/10.1038/nrmicro1636DOI Listing
May 2007

Reciprocal illumination in the gene content tree of life.

Syst Biol 2006 Jun;55(3):441-53

American Museum of Natural History, Molecular Laboratories, Central Park West at 79th Street, (P.J.P.), New York, New York 10024, USA.

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http://dx.doi.org/10.1080/10635150600697416DOI Listing
June 2006

Tree disagreement: measuring and testing incongruence in phylogenies.

Authors:
Paul J Planet

J Biomed Inform 2006 Feb 28;39(1):86-102. Epub 2005 Sep 28.

Molecular Laboratories, American Museum of Natural History, Central Park West at 79th St, New York, NY 10024, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153204640500081
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http://dx.doi.org/10.1016/j.jbi.2005.08.008DOI Listing
February 2006

mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests.

Bioinformatics 2005 Dec 2;21(24):4423-4. Epub 2005 Nov 2.

Division of Invertebrate Zoology, American Museum of Natural History, New York, NY, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti744DOI Listing
December 2005

ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.

Bioinformatics 2004 Dec 22;20(18):3462-5. Epub 2004 Jul 22.

Division of Invertebrate Zoology, Central Park West, 79th Street, American Museum of Natural History, New York, NY 10024, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth427DOI Listing
December 2004

The Widespread Colonization Island of Actinobacillus actinomycetemcomitans.

Nat Genet 2003 Jun;34(2):193-8

Department of Microbiology, College of Physicians & Surgeons, Columbia University, 701 West 168th Street, New York, New York 10032, USA.

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http://dx.doi.org/10.1038/ng1154DOI Listing
June 2003

Tight-adherence genes of Actinobacillus actinomycetemcomitans are required for virulence in a rat model.

Proc Natl Acad Sci U S A 2003 Jun 19;100(12):7295-300. Epub 2003 May 19.

Department of Oral Biology, New Jersey Dental School, University of Medicine and Dentistry of New Jersey, Newark, NJ 07103, USA.

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http://dx.doi.org/10.1073/pnas.1237223100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165869PMC
June 2003

Reexamining microbial evolution through the lens of horizontal transfer.

Authors:
Paul J Planet

EXS 2002 (92):247-303

Department of Microbiology, Columbia University College of Physicians and Surgeons, New York, NY 10032, USA.

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September 2002

An automated phylogenetic key for classifying homeoboxes.

Mol Phylogenet Evol 2002 Sep;24(3):388-99

Department of Medical Informatics, Columbia University College of Physicians and Surgeons, New York, NY, USA.

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September 2002

The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding.

EMBO J 2002 Mar;21(5):1168-76

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1093/emboj/21.5.1168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC125889PMC
March 2002