Paul J Jardine

Paul J Jardine

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Paul J Jardine

Paul J Jardine

Publications by authors named "Paul J Jardine"

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Slow and steady wins the race: physical limits on the rate of viral DNA packaging.

Authors:
Paul J Jardine

Curr Opin Virol 2019 Jun 17;36:32-37. Epub 2019 Apr 17.

Department of Diagnostic and Biological Sciences, University of Minnesota, 18-242 Moos Tower, 515 Delaware St SE, Minneapolis, MN 55455, United States. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18796257183015
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http://dx.doi.org/10.1016/j.coviro.2019.03.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6626563PMC
June 2019

May the Road Rise to Meet You: DNA Deformation May Drive DNA Translocation.

Authors:
Paul J Jardine

Biophys J 2019 Jun 2;116(11):2060-2061. Epub 2019 May 2.

Department of Diagnostic and Biological Sciences, University of Minnesota, Minneapolis, Minnesota. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2019.04.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6554480PMC
June 2019

Molecular switch-like regulation enables global subunit coordination in a viral ring ATPase.

Proc Natl Acad Sci U S A 2018 07 16;115(31):7961-7966. Epub 2018 Jul 16.

Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, CA 94720;

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http://dx.doi.org/10.1073/pnas.1802736115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077733PMC
July 2018

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection.

Phys Rev E 2017 May 17;95(5-1):052408. Epub 2017 May 17.

Department of Physics, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1103/PhysRevE.95.052408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953208PMC
May 2017

Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging.

Nat Phys 2016 Aug 2;12(8):757-761. Epub 2016 May 2.

Department of Physics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0379.

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http://dx.doi.org/10.1038/nphys3740DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4982518PMC
August 2016

Structural and Molecular Basis for Coordination in a Viral DNA Packaging Motor.

Cell Rep 2016 Mar 18;14(8):2017-2029. Epub 2016 Feb 18.

Sealy Center for Structural Biology and Molecular Biophysics, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.

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http://dx.doi.org/10.1016/j.celrep.2016.01.058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824181PMC
March 2016

Packaging Models versus Modeling Packaging.

Authors:
Paul J Jardine

Biophys J 2016 Jan;110(2):287-288

Department of Diagnostic and Biological Sciences, University of Minnesota, Minneapolis, Minnesota. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2015.10.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724656PMC
January 2016

An RNA Domain Imparts Specificity and Selectivity to a Viral DNA Packaging Motor.

J Virol 2015 Dec 30;89(24):12457-66. Epub 2015 Sep 30.

Department of Diagnostic and Biological Sciences and Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA

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http://jvi.asm.org/content/early/2015/09/24/JVI.01895-15.ful
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http://jvi.asm.org/content/89/24/12457.full.pdf
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http://jvi.asm.org/lookup/doi/10.1128/JVI.01895-15
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http://dx.doi.org/10.1128/JVI.01895-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4665235PMC
December 2015

Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29.

Phys Rev Lett 2014 Jun 17;112(24):248101. Epub 2014 Jun 17.

Department of Physics, University of California, San Diego, 9500 Gilman Dr., La Jolla, California 92093, USA.

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http://dx.doi.org/10.1103/PhysRevLett.112.248101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001848PMC
June 2014

Insights into the structure and assembly of the bacteriophage 29 double-stranded DNA packaging motor.

J Virol 2014 Apr 8;88(8):3986-96. Epub 2014 Jan 8.

Department of Diagnostic and Biological Sciences, School of Dentistry, and Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1128/JVI.03203-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993773PMC
April 2014

A three-helix junction is the interface between two functional domains of prohead RNA in 29 DNA packaging.

J Virol 2012 Nov 15;86(21):11625-32. Epub 2012 Aug 15.

Department of Diagnostic and Biological Sciences and Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1128/JVI.01370-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486298PMC
November 2012

High degree of coordination and division of labor among subunits in a homomeric ring ATPase.

Cell 2012 Nov;151(5):1017-28

Department of Physics and Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, CA 94720, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00928674120129
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http://dx.doi.org/10.1016/j.cell.2012.10.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3652982PMC
November 2012

Structure of the RNA claw of the DNA packaging motor of bacteriophage Φ29.

Nucleic Acids Res 2012 Oct 8;40(19):9953-63. Epub 2012 Aug 8.

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1093/nar/gks724DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3479190PMC
October 2012

Role of φ29 connector channel loops in late-stage DNA packaging.

J Mol Biol 2011 Jul 5;410(1):50-9. Epub 2011 May 5.

Department of Diagnostic and Biological Sciences and Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1016/j.jmb.2011.04.070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140409PMC
July 2011

Structure and assembly of the essential RNA ring component of a viral DNA packaging motor.

Proc Natl Acad Sci U S A 2011 May 6;108(18):7357-62. Epub 2011 Apr 6.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1016690108
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http://dx.doi.org/10.1073/pnas.1016690108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3088594PMC
May 2011

Intersubunit coordination in a homomeric ring ATPase.

Nature 2009 Jan 7;457(7228):446-50. Epub 2009 Jan 7.

Department of Physics and Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1038/nature07637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716090PMC
January 2009

Role of the CCA bulge of prohead RNA of bacteriophage ø29 in DNA packaging.

J Mol Biol 2008 Nov 29;383(3):520-8. Epub 2008 Aug 29.

Department of Diagnostic and Biological Sciences, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1016/j.jmb.2008.08.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140408PMC
November 2008

DNA poised for release in bacteriophage phi29.

Structure 2008 Jun;16(6):935-43

Department of Chemistry and Biochemistry, University of California-San Diego, La Jolla, CA 92093, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S096921260800148
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http://dx.doi.org/10.1016/j.str.2008.02.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556148PMC
June 2008

Analysis of intermolecular base pair formation of prohead RNA of the phage phi29 DNA packaging motor using NMR spectroscopy.

Nucleic Acids Res 2008 Feb 15;36(3):839-48. Epub 2007 Dec 15.

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1093/nar/gkm874DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2241910PMC
February 2008

Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29.

Proc Natl Acad Sci U S A 2007 Jul 7;104(27):11245-50. Epub 2007 Jun 7.

Department of Physics, University of California, San Diego, Mail Code 0379, 9500 Gilman Drive, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1073/pnas.0701323104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2040884PMC
July 2007

Structural changes of bacteriophage phi29 upon DNA packaging and release.

EMBO J 2006 Nov 19;25(21):5229-39. Epub 2006 Oct 19.

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-2054, USA.

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http://dx.doi.org/10.1038/sj.emboj.7601386DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1630414PMC
November 2006

Mechanism of force generation of a viral DNA packaging motor.

Cell 2005 Sep;122(5):683-92

Department of Physics, University of California, Berkeley, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1016/j.cell.2005.06.024DOI Listing
September 2005

Bacteriophage phi 29 DNA packaging.

Adv Virus Res 2002 ;58:255-94

Department of Oral Science, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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January 2003