Paul Hohenlohe

Paul Hohenlohe

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Paul Hohenlohe

Paul Hohenlohe

Publications by authors named "Paul Hohenlohe"

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Transcriptomics of Tasmanian Devil () Ear Tissue Reveals Homogeneous Gene Expression Patterns across a Heterogeneous Landscape.

Genes (Basel) 2019 Oct 12;10(10). Epub 2019 Oct 12.

Department of Biological Sciences, University of Idaho, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive, Moscow, ID 83844, USA.

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http://dx.doi.org/10.3390/genes10100801DOI Listing
October 2019

Individual and temporal variation in pathogen load predicts long-term impacts of an emerging infectious disease.

Ecology 2019 03 15;100(3):e02613. Epub 2019 Feb 15.

Environmental Futures Research Institute, Griffith University, Brisbane, Queensland, 4111, Australia.

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http://dx.doi.org/10.1002/ecy.2613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6415924PMC
March 2019

Conserving adaptive potential: lessons from Tasmanian devils and their transmissible cancer.

Conserv Genet 2019 Feb 14;20(1):81-87. Epub 2019 Feb 14.

School of Biological Sciences, Washington State University, Pullman, WA 99164, USA.

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http://dx.doi.org/10.1007/s10592-019-01157-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6759055PMC
February 2019

Conservation implications of limited genetic diversity and population structure in Tasmanian devils ().

Conserv Genet 2017 Aug 7;18(4):977-982. Epub 2017 Feb 7.

Institute for Bioinformatics and Evolutionary Studies, Department of Biological Sciences, University of Idaho, 875 Perimeter Dr., Moscow, Idaho 83844-3051, USA.

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http://link.springer.com/10.1007/s10592-017-0939-5
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http://dx.doi.org/10.1007/s10592-017-0939-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5614444PMC
August 2017

Infection of the fittest: devil facial tumour disease has greatest effect on individuals with highest reproductive output.

Ecol Lett 2017 06 10;20(6):770-778. Epub 2017 May 10.

Environmental Futures Research Institute, Griffith University, Brisbane, QLD, 4111, Australia.

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http://dx.doi.org/10.1111/ele.12776DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6759051PMC
June 2017

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations.

Mol Ecol Resour 2017 05 11;17(3):362-365. Epub 2017 Apr 11.

Division of Biological Sciences, University of Montana, Missoula, MT, 59812, USA.

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http://dx.doi.org/10.1111/1755-0998.12669DOI Listing
May 2017

Development and characterization of fourteen novel microsatellite markers for the chestnut short-tailed fruit bat (Carollia castanea), and cross-amplification to related species.

PeerJ 2016 20;4:e2465. Epub 2016 Sep 20.

Department of Biological Sciences, Institute of Bioinformatics and Evolutionary Studies, University of Idaho , Moscow , ID , United States.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036068PMC
http://dx.doi.org/10.7717/peerj.2465DOI Listing
October 2016

The ecology of an adaptive radiation of three-spined stickleback from North Uist, Scotland.

Mol Ecol 2016 Sep 8;25(17):4319-36. Epub 2016 Aug 8.

School of Life Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031221PMC
http://dx.doi.org/10.1111/mec.13746DOI Listing
September 2016

Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia.

Mol Ecol 2016 Sep 8;25(17):4161-76. Epub 2016 Aug 8.

School of Biological Sciences, Washington State University, Abelson Hall, Room 305, Pullman, WA, 990164, USA.

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http://doi.wiley.com/10.1111/mec.13754
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http://dx.doi.org/10.1111/mec.13754DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021610PMC
September 2016

Rapid evolutionary response to a transmissible cancer in Tasmanian devils.

Nat Commun 2016 08 30;7:12684. Epub 2016 Aug 30.

School of Biological Sciences, Washington State University, Pullman, Washington 99164-4236, USA.

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http://dx.doi.org/10.1038/ncomms12684DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013612PMC
August 2016

Conservation genomics of natural and managed populations: building a conceptual and practical framework.

Mol Ecol 2016 07 18;25(13):2967-77. Epub 2016 May 18.

Flathead Lake Biological Station, Fish and Wildlife Genomic Group, Division of Biological Science, University of Montana, Missoula, MT, 59812, USA.

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http://dx.doi.org/10.1111/mec.13647DOI Listing
July 2016

Harnessing the power of RADseq for ecological and evolutionary genomics.

Nat Rev Genet 2016 Feb 5;17(2):81-92. Epub 2016 Jan 5.

Institute for Bioinformatics and Evolutionary Studies, Department of Biological Sciences, University of Idaho, Moscow, Idaho 83843, USA.

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http://www.nature.com/articles/nrg.2015.28
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http://dx.doi.org/10.1038/nrg.2015.28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823021PMC
February 2016

Trait dimensionality explains widespread variation in local adaptation.

Proc Biol Sci 2015 Mar;282(1802)

Program in Bioinformatics and Computational Biology, University of Idaho, Moscow, ID 83844, USA Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA

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http://dx.doi.org/10.1098/rspb.2014.1570DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344135PMC
March 2015

Trade-offs and utility of alternative RADseq methods: reply to Puritz et al.

Mol Ecol 2014 Dec;23(24):5943-6

School of Biological & Biomedical Sciences, Durham University, South Road, Durham, DH1 3LE, UK.

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http://dx.doi.org/10.1111/mec.12964DOI Listing
December 2014

Ecological genomics in full colour.

Authors:
Paul A Hohenlohe

Mol Ecol 2014 Nov;23(21):5129-31

Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID, 83844, USA.

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http://dx.doi.org/10.1111/mec.12945DOI Listing
November 2014

Genetic regulatory network motifs constrain adaptation through curvature in the landscape of mutational (co)variance.

Evolution 2014 Apr 4;68(4):950-64. Epub 2013 Dec 4.

Department of Biological Sciences and Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, Idaho, 83844-3051.

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http://dx.doi.org/10.1111/evo.12313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3975670PMC
April 2014

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing.

Mol Ecol 2013 Jun 21;22(11):3002-13. Epub 2013 Feb 21.

Department of Biological Sciences, Institute of Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID 83844-3051, USA.

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http://dx.doi.org/10.1111/mec.12239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664261PMC
June 2013

Stacks: an analysis tool set for population genomics.

Mol Ecol 2013 Jun 24;22(11):3124-40. Epub 2013 May 24.

Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403-5289, USA.

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http://dx.doi.org/10.1111/mec.12354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3936987PMC
June 2013

Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.

Methods Mol Biol 2012 ;888:235-60

Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR, USA.

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http://link.springer.com/content/pdf/10.1007/978-1-61779-870
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http://link.springer.com/10.1007/978-1-61779-870-2_14
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http://dx.doi.org/10.1007/978-1-61779-870-2_14DOI Listing
September 2012

Harnessing genomics for delineating conservation units.

Trends Ecol Evol 2012 Sep 21;27(9):489-96. Epub 2012 Jun 21.

Department of Biology, Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO 80523, USA.

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http://dx.doi.org/10.1016/j.tree.2012.05.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4185076PMC
September 2012

RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays.

Mol Ecol Resour 2012 Jul 6;12(4):653-60. Epub 2012 Jun 6.

Fish and Wildlife Genomics Group, Division of Biological Sciences, University of Montana, Missoula, MT 59812, USA.

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http://doi.wiley.com/10.1111/j.1755-0998.2012.03157.x
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http://dx.doi.org/10.1111/j.1755-0998.2012.03157.xDOI Listing
July 2012

SNP discovery and genotyping for evolutionary genetics using RAD sequencing.

Methods Mol Biol 2011 ;772:157-78

Institute of Molecular Biology, University of Oregon, Eugene, OR, USA.

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http://dx.doi.org/10.1007/978-1-61779-228-1_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3658458PMC
February 2012

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes.

Philos Trans R Soc Lond B Biol Sci 2012 Feb;367(1587):395-408

Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403-5289, USA.

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http://dx.doi.org/10.1098/rstb.2011.0245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3233713PMC
February 2012

Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Nat Rev Genet 2011 Jun 17;12(7):499-510. Epub 2011 Jun 17.

Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, King's Buildings, West Mains Road, Edinburgh, EH9 3JT, UK.

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https://web.natur.cuni.cz/~muncling/NGS2.pdf
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http://www.nature.com/doifinder/10.1038/nrg3012
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http://dx.doi.org/10.1038/nrg3012DOI Listing
June 2011

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout.

Mol Ecol Resour 2011 Mar;11 Suppl 1:117-22

Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, 97403-5289, USA.

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http://dx.doi.org/10.1111/j.1755-0998.2010.02967.xDOI Listing
March 2011

USING POPULATION GENOMICS TO DETECT SELECTION IN NATURAL POPULATIONS: KEY CONCEPTS AND METHODOLOGICAL CONSIDERATIONS.

Int J Plant Sci 2010 Nov;171(9):1059-1071

Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403, U.S.A.

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http://dx.doi.org/10.1086/656306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3016716PMC
November 2010

Genomics and the future of conservation genetics.

Nat Rev Genet 2010 Oct;11(10):697-709

University of Montana, Missoula, 59812, USA.

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http://dx.doi.org/10.1038/nrg2844DOI Listing
October 2010

Resolving postglacial phylogeography using high-throughput sequencing.

Proc Natl Acad Sci U S A 2010 Sep 26;107(37):16196-200. Epub 2010 Aug 26.

Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR 97403-5289, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1006538107
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http://dx.doi.org/10.1073/pnas.1006538107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2941283PMC
September 2010

Dimensionality of mate choice, sexual isolation, and speciation.

Proc Natl Acad Sci U S A 2010 Sep 7;107(38):16583-8. Epub 2010 Sep 7.

Department of Zoology, Oregon State University, Corvallis, OR 97331-2914, USA.

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http://dx.doi.org/10.1073/pnas.1003537107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944706PMC
September 2010

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.

PLoS Genet 2010 Feb 26;6(2):e1000862. Epub 2010 Feb 26.

Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon, United States of America.

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https://dx.plos.org/10.1371/journal.pgen.1000862
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http://dx.doi.org/10.1371/journal.pgen.1000862DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829049PMC
February 2010

Drift promotes speciation by sexual selection.

Evolution 2009 Mar 12;63(3):583-94. Epub 2008 Dec 12.

Department of Zoology, Oregon State University, Corvallis, Oregon 97331, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2008.00589.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558038PMC
March 2009

Understanding the evolution and stability of the G-matrix.

Evolution 2008 Oct;62(10):2451-61

Department of Zoology, 3029 Cordley Hall, Oregon State University, Corvallis, Oregon 97331, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2008.00472.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3229175PMC
October 2008

Estimating nonlinear selection gradients using quadratic regression coefficients: double or nothing?

Evolution 2008 Sep 4;62(9):2435-40. Epub 2008 Jul 4.

Department of Ecology & Evolutionary Biology, and Centre for the Analysis of Genome Evolution & Function, University of Toronto, Toronto, ON M5S 3B2, Canada.

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http://dx.doi.org/10.1111/j.1558-5646.2008.00449.xDOI Listing
September 2008

A publish-subscribe model of genetic networks.

PLoS One 2008 Sep 19;3(9):e3245. Epub 2008 Sep 19.

Philosophy Program, RSSS, Australian National University, Canberra, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003245PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2531231PMC
September 2008

MIPoD: a hypothesis-testing framework for microevolutionary inference from patterns of divergence.

Am Nat 2008 Mar;171(3):366-85

Department of Zoology, Oregon State University, Corvallis, Oregon 97331, USA.

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http://dx.doi.org/10.1086/527498DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2432089PMC
March 2008