Patrick O Brown

Patrick O Brown

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Patrick O Brown

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Directed Chemical Evolution with an Outsized Genetic Code.

PLoS One 2016 10;11(8):e0154765. Epub 2016 Aug 10.

Department of Biochemistry, Stanford University, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0154765PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980042PMC
August 2017

Dynamic ASXL1 Exon Skipping and Alternative Circular Splicing in Single Human Cells.

PLoS One 2016 13;11(10):e0164085. Epub 2016 Oct 13.

Departments of Oncology and Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0164085PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063410PMC
May 2017

Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets.

PLoS Biol 2015 20;13(11):e1002307. Epub 2015 Nov 20.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.plos.org/10.1371/journal.pbio.1002307
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http://dx.doi.org/10.1371/journal.pbio.1002307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654594PMC
May 2016

Automated Analysis and Classification of Histological Tissue Features by Multi-Dimensional Microscopic Molecular Profiling.

PLoS One 2015 15;10(7):e0128975. Epub 2015 Jul 15.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128975PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4503351PMC
April 2016

Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae.

PLoS One 2014 29;9(10):e110799. Epub 2014 Oct 29.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0110799PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4212993PMC
June 2015

Circular RNA is expressed across the eukaryotic tree of life.

PLoS One 2014 7;9(6):e90859. Epub 2014 Mar 7.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0090859PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3946582PMC
February 2015

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.

Elife 2014 May 9;3:e01257. Epub 2014 May 9.

Department of Biochemistry, Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, United States.

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http://dx.doi.org/10.7554/eLife.01257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4052883PMC
May 2014

Cell-type specific features of circular RNA expression.

PLoS Genet 2013 5;9(9):e1003777. Epub 2013 Sep 5.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003777DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3764148PMC
March 2014

Improved discovery of molecular interactions in genome-scale data with adaptive model-based normalization.

PLoS One 2013 22;8(1):e53930. Epub 2013 Jan 22.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053930PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551948PMC
July 2013

Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae.

Genome Res 2013 Jun 1;23(6):1028-38. Epub 2013 May 1.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1101/gr.153031.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668357PMC
June 2013

The yeast Rab GTPase Ypt1 modulates unfolded protein response dynamics by regulating the stability of HAC1 RNA.

PLoS Genet 2012 26;8(7):e1002862. Epub 2012 Jul 26.

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1371/journal.pgen.1002862DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406009PMC
January 2013

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.

PLoS One 2012 1;7(2):e30733. Epub 2012 Feb 1.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030733PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3270023PMC
September 2012

ESRRA-C11orf20 is a recurrent gene fusion in serous ovarian carcinoma.

PLoS Biol 2011 Sep 20;9(9):e1001156. Epub 2011 Sep 20.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pbio.1001156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176749PMC
September 2011

Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome.

Nucleic Acids Res 2011 Mar 18;39(4):1501-9. Epub 2010 Oct 18.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1093/nar/gkq920DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3045596PMC
March 2011

Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus.

PLoS One 2011 Jan 18;6(1):e15615. Epub 2011 Jan 18.

Departments of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0015615PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022624PMC
January 2011

Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function.

Proc Natl Acad Sci U S A 2010 Oct 4;107(42):17864-71. Epub 2010 Oct 4.

Department of Chemistry, Stanford University, Stanford, CA 94305-5080, USA.

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http://dx.doi.org/10.1073/pnas.1012868107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2964242PMC
October 2010

Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae.

PLoS One 2010 Sep 10;5(9). Epub 2010 Sep 10.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012671PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937035PMC
September 2010

DNA methylation profiles of ovarian epithelial carcinoma tumors and cell lines.

PLoS One 2010 Feb 22;5(2):e9359. Epub 2010 Feb 22.

Department of Biochemistry and Molecular Biology, University of Southern California, Los Angeles, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0009359PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2825254PMC
February 2010

Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA.

PLoS Biol 2009 Nov 10;7(11):e1000238. Epub 2009 Nov 10.

Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, California, USA.

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https://dx.plos.org/10.1371/journal.pbio.1000238
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http://dx.doi.org/10.1371/journal.pbio.1000238DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2766070PMC
November 2009

The preclinical natural history of serous ovarian cancer: defining the target for early detection.

PLoS Med 2009 Jul 28;6(7):e1000114. Epub 2009 Jul 28.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pmed.1000114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2711307PMC
July 2009

Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system.

PLoS Biol 2008 Oct;6(10):e255

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.0060255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573929PMC
October 2008

Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance.

PLoS One 2008 May 7;3(5):e2126. Epub 2008 May 7.

Department of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002126PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2330160PMC
May 2008

The Stanford Tissue Microarray Database.

Nucleic Acids Res 2008 Jan 7;36(Database issue):D871-7. Epub 2007 Nov 7.

Department of Biochemistry, Stanford University School of Medicine, Howard Hughes Medical Institute, Stanford, CA, USA.

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http://dx.doi.org/10.1093/nar/gkm861DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238948PMC
January 2008

Transcriptional modulation of genes encoding structural characteristics of differentiating enterocytes during development of a polarized epithelium in vitro.

Mol Biol Cell 2007 Nov 15;18(11):4261-78. Epub 2007 Aug 15.

Department of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1091/mbc.e07-04-0308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2043570PMC
November 2007

Development of the human infant intestinal microbiota.

PLoS Biol 2007 Jul 26;5(7):e177. Epub 2007 Jun 26.

Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.0050177DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1896187PMC
July 2007

Virtual Northern analysis of the human genome.

PLoS One 2007 May 23;2(5):e460. Epub 2007 May 23.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000460PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866243PMC
May 2007

Gene expression patterns in pancreatic tumors, cells and tissues.

PLoS One 2007 Mar 28;2(3):e323. Epub 2007 Mar 28.

Department of Medicine, Stanford University Medical Center, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000323PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1824711PMC
March 2007

Predicting a local recurrence after breast-conserving therapy by gene expression profiling.

Breast Cancer Res 2006 ;8(5):R62

Department of Radiation Oncology, The Netherlands Cancer Institute/Antoni van Leeuwenhoek Hospital, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.

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http://dx.doi.org/10.1186/bcr1614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1779489PMC
January 2007

Exploring the regulation of human neural precursor cell differentiation using arrays of signaling microenvironments.

Mol Syst Biol 2006 4;2:37. Epub 2006 Jul 4.

Department of Biochemistry, Stanford University, Stanford, CA 94305-5307, USA.

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http://dx.doi.org/10.1038/msb4100076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1681508PMC
September 2006

2005 Curt Stern Award address. Exploring along a crooked path.

Authors:
Patrick O Brown

Am J Hum Genet 2006 Sep;79(3):429-33

Department of Biochemistry, Stanford University School of Medicine and Howard Hughes Medical Institute, Stanford, CA 94350, USA.

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http://dx.doi.org/10.1086/507689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1559557PMC
September 2006

Differential gene expression in anatomical compartments of the human eye.

Genome Biol 2005 17;6(9):R74. Epub 2005 Aug 17.

Department of Ophthalmology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1186/gb-2005-6-9-r74DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1242209PMC
July 2006

Minimizing off-target effects by using diced siRNAs for RNA interference.

J RNAi Gene Silencing 2006 Jul 17;2(2):181-94. Epub 2006 Jul 17.

Stanford University School of Medicine, Department of Molecular Pharmacology, 269 West Campus Drive, CCSR Room 3155, Stanford CA 94305-5174, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2737221PMC
July 2006

Anatomic demarcation by positional variation in fibroblast gene expression programs.

PLoS Genet 2006 Jul;2(7):e119

Program in Epithelial Biology, Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pgen.0020119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1523235PMC
July 2006

Gene expression patterns in human placenta.

Proc Natl Acad Sci U S A 2006 Apr 27;103(14):5478-83. Epub 2006 Mar 27.

Department of Biochemistry, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.0508035103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1414632PMC
April 2006

A DNA microarray survey of gene expression in normal human tissues.

Genome Biol 2005 14;6(3):R22. Epub 2005 Feb 14.

Department of Pathology, Stanford University School of Medicine, 269 Campus Drive, CCSR 3245A, Stanford, CA 94305-5176, USA.

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http://dx.doi.org/10.1186/gb-2005-6-3-r22DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1088941PMC
March 2006

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster.

Proc Natl Acad Sci U S A 2006 Mar 13;103(12):4487-92. Epub 2006 Mar 13.

Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland.

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http://dx.doi.org/10.1073/pnas.0509260103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1400586PMC
March 2006

Rapid quantitative profiling of complex microbial populations.

Nucleic Acids Res 2006 Jan 10;34(1):e5. Epub 2006 Jan 10.

Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1093/nar/gnj007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326253PMC
January 2006

Genome-scale identification of membrane-associated human mRNAs.

PLoS Genet 2006 Jan 13;2(1):e11. Epub 2006 Jan 13.

Department of Radiation Oncology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pgen.0020011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326219PMC
January 2006

Marked differences in human melanoma antigen-specific T cell responsiveness after vaccination using a functional microarray.

PLoS Med 2005 Oct 20;2(10):e265. Epub 2005 Sep 20.

Department of Internal Medicine/Division of Oncology, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pmed.0020265DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1216330PMC
October 2005

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli.

Genome Biol 2004 1;5(11):R87. Epub 2004 Nov 1.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3204, USA.

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http://dx.doi.org/10.1186/gb-2004-5-11-r87DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545778PMC
August 2005

Dissecting eukaryotic translation and its control by ribosome density mapping.

Nucleic Acids Res 2005 28;33(8):2421-32. Epub 2005 Apr 28.

Howard Hughes Medical Institute, Stanford, CA 94305-5428, USA.

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http://dx.doi.org/10.1093/nar/gki331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087779PMC
May 2005

Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme.

Proc Natl Acad Sci U S A 2005 Apr 12;102(16):5814-9. Epub 2005 Apr 12.

Preuss Laboratory for Molecular Neuro-oncology and Department of Neurological Surgery, University of California-San Francisco, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1073/pnas.0402870102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC556127PMC
April 2005

A method for detecting and correcting feature misidentification on expression microarrays.

BMC Genomics 2004 Sep 9;5:64. Epub 2004 Sep 9.

Functional Genomics Facility, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1186/1471-2164-5-64DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521069PMC
September 2004

A specific gene expression program triggered by Gram-positive bacteria in the cytosol.

Proc Natl Acad Sci U S A 2004 Aug 21;101(31):11386-91. Epub 2004 Jul 21.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3202, USA.

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http://dx.doi.org/10.1073/pnas.0403215101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC509177PMC
August 2004

Diverse and specific gene expression responses to stresses in cultured human cells.

Mol Biol Cell 2004 May 5;15(5):2361-74. Epub 2004 Mar 5.

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1091/mbc.e03-11-0799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC404029PMC
May 2004

Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae.

Mol Biol Cell 2004 Mar 10;15(3):1233-43. Epub 2003 Dec 10.

Liver Diseases Section, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1091/mbc.e03-09-0642DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC363115PMC
March 2004

Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae.

Genome Biol 2003 22;5(1):R2. Epub 2003 Dec 22.

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305-5307, USA.

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http://dx.doi.org/10.1186/gb-2003-5-1-r2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC395734PMC
March 2004

Presynaptic homeostasis at CNS nerve terminals compensates for lack of a key Ca2+ entry pathway.

Proc Natl Acad Sci U S A 2004 Mar 27;101(10):3609-14. Epub 2004 Feb 27.

Department of Molecular and Cellular Physiology, Beckman Center, Stanford University School of Medicine, Stanford, CA 94305-5345, USA.

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http://dx.doi.org/10.1073/pnas.0308188100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC373510PMC
March 2004

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast.

PLoS Biol 2004 Mar 16;2(3):E79. Epub 2004 Mar 16.

Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pbio.0020079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC368173PMC
March 2004

Cancer characterization and feature set extraction by discriminative margin clustering.

BMC Bioinformatics 2004 Mar 3;5:21. Epub 2004 Mar 3.

Department of Biochemistry, Stanford University School of Medicine, 466 Gates Computer Science, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1186/1471-2105-5-21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC385290PMC
March 2004

Gene expression in the normal adult human kidney assessed by complementary DNA microarray.

Mol Biol Cell 2004 Feb 2;15(2):649-56. Epub 2003 Dec 2.

Department of Pathology, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1091/mbc.e03-06-0432DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC329285PMC
February 2004

Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans.

Am J Pathol 2003 Dec;163(6):2383-95

Departments of Pathology, Genetics, and Biochemistry, and Howard Hughes Medical Institute, Stanford University Medical Center, Stanford, California 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1892373PMC
http://dx.doi.org/10.1016/S0002-9440(10)63593-6DOI Listing
December 2003

Detection and characterization of cellular immune responses using peptide-MHC microarrays.

PLoS Biol 2003 Dec 22;1(3):E65. Epub 2003 Dec 22.

Department of Biochemistry, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pbio.0000065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC300678PMC
December 2003

Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors.

Proc Natl Acad Sci U S A 2003 Nov 31;100(23):13350-5. Epub 2003 Oct 31.

Wisconsin National Primate Research Center and Department of Anatomy, School of Medicine, University of Wisconsin, Madison, WI 53715, USA.

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http://dx.doi.org/10.1073/pnas.2235735100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC263817PMC
November 2003

Systemic and cell type-specific gene expression patterns in scleroderma skin.

Proc Natl Acad Sci U S A 2003 Oct 6;100(21):12319-24. Epub 2003 Oct 6.

Department of Dermatology, University of California-San Francisco, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1073/pnas.1635114100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC218756PMC
October 2003

Why PLoS became a publisher.

PLoS Biol 2003 Oct 13;1(1):E36. Epub 2003 Oct 13.

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http://dx.doi.org/10.1371/journal.pbio.0000036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC212706PMC
October 2003

Endothelial cell diversity revealed by global expression profiling.

Proc Natl Acad Sci U S A 2003 Sep 8;100(19):10623-8. Epub 2003 Sep 8.

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.1434429100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC196854PMC
September 2003

Variation in gene expression patterns in human gastric cancers.

Mol Biol Cell 2003 Aug 17;14(8):3208-15. Epub 2003 Apr 17.

Department of Surgery, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1091/mbc.e02-12-0833DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC181561PMC
August 2003

Genomewide view of gene silencing by small interfering RNAs.

Proc Natl Acad Sci U S A 2003 May 2;100(11):6343-6. Epub 2003 May 2.

Department of Biochemistry, Stanford University School of Medicine, CA 94305, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1037853100
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http://dx.doi.org/10.1073/pnas.1037853100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC164448PMC
May 2003

Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin.

Proc Natl Acad Sci U S A 2003 May 15;100(11):6364-9. Epub 2003 May 15.

Department of Pathology, Stanford University, CA 94305-5428, USA.

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http://dx.doi.org/10.1073/pnas.1131966100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC164452PMC
May 2003

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae.

Proc Natl Acad Sci U S A 2003 Apr 26;100(7):3889-94. Epub 2003 Mar 26.

Department of Biochemistry, Stanford University, Stanford, CA 94305-5307, USA.

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http://dx.doi.org/10.1073/pnas.0635171100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153018PMC
April 2003

A gene-expression program reflecting the innate immune response of cultured intestinal epithelial cells to infection by Listeria monocytogenes.

Genome Biol 2003 23;4(1):R2. Epub 2002 Dec 23.

Department of Biochemistry, Stanford University School of Medicine, Beckman Center, 279 West Campus Drive, Stanford, CA 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151283PMC
http://dx.doi.org/10.1186/gb-2002-4-1-r2DOI Listing
March 2003

Variation in gene expression patterns in follicular lymphoma and the response to rituximab.

Proc Natl Acad Sci U S A 2003 Feb 5;100(4):1926-30. Epub 2003 Feb 5.

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.0437875100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC149935PMC
February 2003

Individuality and variation in gene expression patterns in human blood.

Proc Natl Acad Sci U S A 2003 Feb 10;100(4):1896-901. Epub 2003 Feb 10.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.252784499DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC149930PMC
February 2003

The Stanford Microarray Database: data access and quality assessment tools.

Nucleic Acids Res 2003 Jan;31(1):94-6

Department of Genetics, Center for Clinical Sciences Research, 269 Campus Drive, Room 2255b, Stanford University, Stanford, CA 94305-5163, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165525PMC
http://dx.doi.org/10.1093/nar/gkg078DOI Listing
January 2003