Patrick Minx

Patrick Minx

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Patrick Minx

Patrick Minx

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Whole-Genome Sequencing of Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection.

Front Cell Infect Microbiol 2019 8;9:14. Epub 2019 Feb 8.

Division of Pediatric Infectious Diseases, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, United States.

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http://dx.doi.org/10.3389/fcimb.2019.00014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6375827PMC
February 2019

The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development.

BMC Genomics 2018 02 20;19(1):155. Epub 2018 Feb 20.

Department of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.

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http://dx.doi.org/10.1186/s12864-018-4539-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819677PMC
February 2018

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon Di Stefano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer Ty Anna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 08 23;8:16153. Epub 2017 Aug 23.

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http://dx.doi.org/10.1038/ncomms16153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569240PMC
August 2017

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon di Stephano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer TyAnna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 05 16;8:15451. Epub 2017 May 16.

The McDonnell Genome Institute, Washington University, Saint Louis, Missouri 63108 USA.

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http://dx.doi.org/10.1038/ncomms15451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440852PMC
May 2017

Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates.

Sci Adv 2016 08 10;2(8):e1600633. Epub 2016 Aug 10.

Department of Veterinary Integrative Biosciences, Interdisciplinary Program in Genetics, Texas A&M University, College Station, TX 77843, USA.

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http://dx.doi.org/10.1126/sciadv.1600633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980104PMC
August 2016

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

BMC Genomics 2016 Jan 7;17:37. Epub 2016 Jan 7.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, 419 Centennial Hall, 601 University Drive, San Marcos, TX, 78666, USA.

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http://dx.doi.org/10.1186/s12864-015-2361-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705583PMC
January 2016

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection.

Authors:
Rafael D Mesquita Raquel J Vionette-Amaral Carl Lowenberger Rolando Rivera-Pomar Fernando A Monteiro Patrick Minx John Spieth A Bernardo Carvalho Francisco Panzera Daniel Lawson André Q Torres Jose M C Ribeiro Marcos H F Sorgine Robert M Waterhouse Michael J Montague Fernando Abad-Franch Michele Alves-Bezerra Laurence R Amaral Helena M Araujo Ricardo N Araujo L Aravind Georgia C Atella Patricia Azambuja Mateus Berni Paula R Bittencourt-Cunha Gloria R C Braz Gustavo Calderón-Fernández Claudia M A Carareto Mikkel B Christensen Igor R Costa Samara G Costa Marilvia Dansa Carlos R O Daumas-Filho Iron F De-Paula Felipe A Dias George Dimopoulos Scott J Emrich Natalia Esponda-Behrens Patricia Fampa Rita D Fernandez-Medina Rodrigo N da Fonseca Marcio Fontenele Catrina Fronick Lucinda A Fulton Ana Caroline Gandara Eloi S Garcia Fernando A Genta Gloria I Giraldo-Calderón Bruno Gomes Katia C Gondim Adriana Granzotto Alessandra A Guarneri Roderic Guigó Myriam Harry Daniel S T Hughes Willy Jablonka Emmanuelle Jacquin-Joly M Patricia Juárez Leonardo B Koerich Angela B Lange José Manuel Latorre-Estivalis Andrés Lavore Gena G Lawrence Cristiano Lazoski Claudio R Lazzari Raphael R Lopes Marcelo G Lorenzo Magda D Lugon David Majerowicz Paula L Marcet Marco Mariotti Hatisaburo Masuda Karine Megy Ana C A Melo Fanis Missirlis Theo Mota Fernando G Noriega Marcela Nouzova Rodrigo D Nunes Raquel L L Oliveira Gilbert Oliveira-Silveira Sheila Ons Ian Orchard Lucia Pagola Gabriela O Paiva-Silva Agustina Pascual Marcio G Pavan Nicolás Pedrini Alexandre A Peixoto Marcos H Pereira Andrew Pike Carla Polycarpo Francisco Prosdocimi Rodrigo Ribeiro-Rodrigues Hugh M Robertson Ana Paula Salerno Didier Salmon Didac Santesmasses Renata Schama Eloy S Seabra-Junior Livia Silva-Cardoso Mario A C Silva-Neto Matheus Souza-Gomes Marcos Sterkel Mabel L Taracena Marta Tojo Zhijian Jake Tu Jose M C Tubio Raul Ursic-Bedoya Thiago M Venancio Ana Beatriz Walter-Nuno Derek Wilson Wesley C Warren Richard K Wilson Erwin Huebner Ellen M Dotson Pedro L Oliveira

Proc Natl Acad Sci U S A 2015 Dec 16;112(48):14936-41. Epub 2015 Nov 16.

Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular, Rio de Janeiro 21941-591, Brazil; Programa de Biologia Molecular e Biotecnologia, Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-591, Brazil;

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http://dx.doi.org/10.1073/pnas.1506226112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4672799PMC
December 2015

Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes.

Cell 2014 Nov 30;159(4):800-13. Epub 2014 Oct 30.

Whitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.09.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260969PMC
November 2014

Graph accordance of next-generation sequence assemblies.

Bioinformatics 2012 Jan 23;28(1):13-6. Epub 2011 Oct 23.

The Genome Institute, Washington University School of Medicine, 4444 Forest Park Avenue, St Louis, MO 63108, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244760PMC
January 2012

A high-resolution map of human evolutionary constraint using 29 mammals.

Nature 2011 Oct 12;478(7370):476-82. Epub 2011 Oct 12.

Broad Institute of Harvard and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature10530DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207357PMC
October 2011

Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.

Nucleic Acids Res 2011 Sep 28;39(17):7529-47. Epub 2011 Jun 28.

Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn VA 20147, USA.

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http://dx.doi.org/10.1093/nar/gkr501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3177221PMC
September 2011

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content.

Nature 2010 Jan 13;463(7280):536-9. Epub 2010 Jan 13.

Howard Hughes Medical Institute, Whitehead Institute, and Department of Biology, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature08700DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3653425PMC
January 2010

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/nature06341DOI Listing
November 2007

Application of a superword array in genome assembly.

Nucleic Acids Res 2006 5;34(1):201-5. Epub 2006 Jan 5.

Department of Computer Science, Iowa State University, Ames, IA 50011-1040, USA.

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http://dx.doi.org/10.1093/nar/gkj419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1325203PMC
January 2006

Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee.

Nature 2005 Sep;437(7055):100-3

Howard Hughes Medical Institute, Whitehead Institute, and Department of Biology, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature04101DOI Listing
September 2005

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Authors:
Ladeana W Hillier Tina A Graves Robert S Fulton Lucinda A Fulton Kymberlie H Pepin Patrick Minx Caryn Wagner-McPherson Dan Layman Kristine Wylie Mandeep Sekhon Michael C Becker Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Colin Kremitzki Lachlan Oddy Hui Du Hui Sun Holland Bradshaw-Cordum Johar Ali Jason Carter Matt Cordes Anthony Harris Amber Isak Andrew van Brunt Christine Nguyen Feiyu Du Laura Courtney Joelle Kalicki Philip Ozersky Scott Abbott Jon Armstrong Edward A Belter Lauren Caruso Maria Cedroni Marc Cotton Teresa Davidson Anu Desai Glendoria Elliott Thomas Erb Catrina Fronick Tony Gaige William Haakenson Krista Haglund Andrea Holmes Richard Harkins Kyung Kim Scott S Kruchowski Cynthia Madsen Strong Neenu Grewal Ernest Goyea Shunfang Hou Andrew Levy Scott Martinka Kelly Mead Michael D McLellan Rick Meyer Jennifer Randall-Maher Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Neha Shah Sharhonda Swearengen-Shahid Jacqueline Snider Joseph T Strong Johanna Thompson Martin Yoakum Shawn Leonard Charlene Pearman Lee Trani Maxim Radionenko Jason E Waligorski Chunyan Wang Susan M Rock Aye-Mon Tin-Wollam Rachel Maupin Phil Latreille Michael C Wendl Shiaw-Pyng Yang Craig Pohl John W Wallis John Spieth Tamberlyn A Bieri Nicolas Berkowicz Joanne O Nelson John Osborne Li Ding Rekha Meyer Aniko Sabo Yoram Shotland Prashant Sinha Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Thomas A Jones Xinwei She Francesca D Ciccarelli Elisa Izaurralde James Taylor Jeremy Schmutz Richard M Myers David R Cox Xiaoqiu Huang John D McPherson Elaine R Mardis Sandra W Clifton Wesley C Warren Asif T Chinwalla Sean R Eddy Marco A Marra Ivan Ovcharenko Terrence S Furey Webb Miller Evan E Eichler Peer Bork Mikita Suyama David Torrents Robert H Waterston Richard K Wilson

Nature 2005 Apr;434(7034):724-31

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature03466DOI Listing
April 2005

The DNA sequence of the human X chromosome.

Authors:
Mark T Ross Darren V Grafham Alison J Coffey Steven Scherer Kirsten McLay Donna Muzny Matthias Platzer Gareth R Howell Christine Burrows Christine P Bird Adam Frankish Frances L Lovell Kevin L Howe Jennifer L Ashurst Robert S Fulton Ralf Sudbrak Gaiping Wen Matthew C Jones Matthew E Hurles T Daniel Andrews Carol E Scott Stephen Searle Juliane Ramser Adam Whittaker Rebecca Deadman Nigel P Carter Sarah E Hunt Rui Chen Andrew Cree Preethi Gunaratne Paul Havlak Anne Hodgson Michael L Metzker Stephen Richards Graham Scott David Steffen Erica Sodergren David A Wheeler Kim C Worley Rachael Ainscough Kerrie D Ambrose M Ali Ansari-Lari Swaroop Aradhya Robert I S Ashwell Anne K Babbage Claire L Bagguley Andrea Ballabio Ruby Banerjee Gary E Barker Karen F Barlow Ian P Barrett Karen N Bates David M Beare Helen Beasley Oliver Beasley Alfred Beck Graeme Bethel Karin Blechschmidt Nicola Brady Sarah Bray-Allen Anne M Bridgeman Andrew J Brown Mary J Brown David Bonnin Elspeth A Bruford Christian Buhay Paula Burch Deborah Burford Joanne Burgess Wayne Burrill John Burton Jackie M Bye Carol Carder Laura Carrel Joseph Chako Joanne C Chapman Dean Chavez Ellson Chen Guan Chen Yuan Chen Zhijian Chen Craig Chinault Alfredo Ciccodicola Sue Y Clark Graham Clarke Chris M Clee Sheila Clegg Kerstin Clerc-Blankenburg Karen Clifford Vicky Cobley Charlotte G Cole Jen S Conquer Nicole Corby Richard E Connor Robert David Joy Davies Clay Davis John Davis Oliver Delgado Denise Deshazo Pawandeep Dhami Yan Ding Huyen Dinh Steve Dodsworth Heather Draper Shannon Dugan-Rocha Andrew Dunham Matthew Dunn K James Durbin Ireena Dutta Tamsin Eades Matthew Ellwood Alexandra Emery-Cohen Helen Errington Kathryn L Evans Louisa Faulkner Fiona Francis John Frankland Audrey E Fraser Petra Galgoczy James Gilbert Rachel Gill Gernot Glöckner Simon G Gregory Susan Gribble Coline Griffiths Russell Grocock Yanghong Gu Rhian Gwilliam Cerissa Hamilton Elizabeth A Hart Alicia Hawes Paul D Heath Katja Heitmann Steffen Hennig Judith Hernandez Bernd Hinzmann Sarah Ho Michael Hoffs Phillip J Howden Elizabeth J Huckle Jennifer Hume Paul J Hunt Adrienne R Hunt Judith Isherwood Leni Jacob David Johnson Sally Jones Pieter J de Jong Shirin S Joseph Stephen Keenan Susan Kelly Joanne K Kershaw Ziad Khan Petra Kioschis Sven Klages Andrew J Knights Anna Kosiura Christie Kovar-Smith Gavin K Laird Cordelia Langford Stephanie Lawlor Margaret Leversha Lora Lewis Wen Liu Christine Lloyd David M Lloyd Hermela Loulseged Jane E Loveland Jamieson D Lovell Ryan Lozado Jing Lu Rachael Lyne Jie Ma Manjula Maheshwari Lucy H Matthews Jennifer McDowall Stuart McLaren Amanda McMurray Patrick Meidl Thomas Meitinger Sarah Milne George Miner Shailesh L Mistry Margaret Morgan Sidney Morris Ines Müller James C Mullikin Ngoc Nguyen Gabriele Nordsiek Gerald Nyakatura Christopher N O'Dell Geoffery Okwuonu Sophie Palmer Richard Pandian David Parker Julia Parrish Shiran Pasternak Dina Patel Alex V Pearce Danita M Pearson Sarah E Pelan Lesette Perez Keith M Porter Yvonne Ramsey Kathrin Reichwald Susan Rhodes Kerry A Ridler David Schlessinger Mary G Schueler Harminder K Sehra Charles Shaw-Smith Hua Shen Elizabeth M Sheridan Ratna Shownkeen Carl D Skuce Michelle L Smith Elizabeth C Sotheran Helen E Steingruber Charles A Steward Roy Storey R Mark Swann David Swarbreck Paul E Tabor Stefan Taudien Tineace Taylor Brian Teague Karen Thomas Andrea Thorpe Kirsten Timms Alan Tracey Steve Trevanion Anthony C Tromans Michele d'Urso Daniel Verduzco Donna Villasana Lenee Waldron Melanie Wall Qiaoyan Wang James Warren Georgina L Warry Xuehong Wei Anthony West Siobhan L Whitehead Mathew N Whiteley Jane E Wilkinson David L Willey Gabrielle Williams Leanne Williams Angela Williamson Helen Williamson Laurens Wilming Rebecca L Woodmansey Paul W Wray Jennifer Yen Jingkun Zhang Jianling Zhou Huda Zoghbi Sara Zorilla David Buck Richard Reinhardt Annemarie Poustka André Rosenthal Hans Lehrach Alfons Meindl Patrick J Minx Ladeana W Hillier Huntington F Willard Richard K Wilson Robert H Waterston Catherine M Rice Mark Vaudin Alan Coulson David L Nelson George Weinstock John E Sulston Richard Durbin Tim Hubbard Richard A Gibbs Stephan Beck Jane Rogers David R Bentley

Nature 2005 Mar;434(7031):325-37

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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March 2005

Mutations of the SBDS gene are present in most patients with Shwachman-Diamond syndrome.

Blood 2004 Dec 29;104(12):3588-90. Epub 2004 Jul 29.

Division of Oncology, Department of Medicine, Genome Sequencing Center, Washington University School of Medicine, St Louis, MO, USA.

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December 2004

The DNA sequence of human chromosome 7.

Authors:
Ladeana W Hillier Robert S Fulton Lucinda A Fulton Tina A Graves Kymberlie H Pepin Caryn Wagner-McPherson Dan Layman Jason Maas Sara Jaeger Rebecca Walker Kristine Wylie Mandeep Sekhon Michael C Becker Michelle D O'Laughlin Mark E Schaller Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Matt Cordes Hui Du Hui Sun Jennifer Edwards Holland Bradshaw-Cordum Johar Ali Stephanie Andrews Amber Isak Andrew Vanbrunt Christine Nguyen Feiyu Du Betty Lamar Laura Courtney Joelle Kalicki Philip Ozersky Lauren Bielicki Kelsi Scott Andrea Holmes Richard Harkins Anthony Harris Cynthia Madsen Strong Shunfang Hou Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Shawn Leonard Theresa Rohlfing Susan M Rock Aye-Mon Tin-Wollam Amanda Abbott Patrick Minx Rachel Maupin Catrina Strowmatt Phil Latreille Nancy Miller Doug Johnson Jennifer Murray Jeffrey P Woessner Michael C Wendl Shiaw-Pyng Yang Brian R Schultz John W Wallis John Spieth Tamberlyn A Bieri Joanne O Nelson Nicolas Berkowicz Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Joseph A Bedell Elaine R Mardis Sandra W Clifton Stephanie L Chissoe Marco A Marra Christopher Raymond Eric Haugen Will Gillett Yang Zhou Rose James Karen Phelps Shawn Iadanoto Kerry Bubb Elizabeth Simms Ruth Levy James Clendenning Rajinder Kaul W James Kent Terrence S Furey Robert A Baertsch Michael R Brent Evan Keibler Paul Flicek Peer Bork Mikita Suyama Jeffrey A Bailey Matthew E Portnoy David Torrents Asif T Chinwalla Warren R Gish Sean R Eddy John D McPherson Maynard V Olson Evan E Eichler Eric D Green Robert H Waterston Richard K Wilson

Nature 2003 Jul;424(6945):157-64

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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July 2003

Abundant gene conversion between arms of palindromes in human and ape Y chromosomes.

Nature 2003 Jun;423(6942):873-6

Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA.

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June 2003