Patrice Gouet

Patrice Gouet

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Patrice Gouet

Publications by authors named "Patrice Gouet"

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In vitro, in cellulo and structural characterizations of the interaction between the integrase of Porcine Endogenous Retrovirus A/C and proteins of the BET family.

Virology 2019 Apr 16;532:69-81. Epub 2019 Apr 16.

INRA, Université Lyon 1, UMR754, Viral Infections Compared Pathology, 69007, Lyon, France; Université de Lyon, 69000, Lyon, France; UMSl3444 Biosciences Gerland Lyon Sud, 69007, Lyon, France. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2019.04.002DOI Listing
April 2019

Structural model of the full-length Ser/Thr protein kinase StkP from S. pneumoniae and its recognition of peptidoglycan fragments.

J Biomol Struct Dyn 2018 Nov 7;36(14):3666-3679. Epub 2017 Nov 7.

c Istituto di Chimica del Riconoscimento Molecolare (ICRM) , CNR c/o Università Cattolica del Sacro Cuore L.go F , Vito 1, Rome 00168 , Italy.

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http://dx.doi.org/10.1080/07391102.2017.1395767DOI Listing
November 2018

computation of the PDB to audit diffraction anisotropy of soluble and membrane proteins.

Data Brief 2018 Aug 19;19:753-757. Epub 2018 May 19.

Molecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367 Cedex 7, Lyon, France.

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http://dx.doi.org/10.1016/j.dib.2018.05.072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6139481PMC
August 2018

Identification and visualization of protein binding regions with the ArDock server.

Nucleic Acids Res 2018 07;46(W1):W417-W422

Molecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche, Université Claude Bernard Lyon 1, Centre National de la Recherche Scientifique, 69367 Lyon Cedex 07, France.

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http://dx.doi.org/10.1093/nar/gky472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031020PMC
July 2018

PASTA repeats of the protein kinase StkP interconnect cell constriction and separation of Streptococcus pneumoniae.

Nat Microbiol 2018 02 4;3(2):197-209. Epub 2017 Dec 4.

Molecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche, Université Claude Bernard Lyon 1, Centre National de la Recherche Scientifique, Lyon, France.

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http://dx.doi.org/10.1038/s41564-017-0069-3DOI Listing
February 2018

X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins.

Sci Rep 2017 12 5;7(1):17013. Epub 2017 Dec 5.

Molecular Microbiology and Structural Biochemistry institute, UMR5086 CNRS Univ-Lyon, F-69367, Cedex 7, Lyon, France.

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http://dx.doi.org/10.1038/s41598-017-17216-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5717104PMC
December 2017

A staggered decameric assembly of human C-reactive protein stabilized by zinc ions revealed by X-ray crystallography.

Protein Pept Lett 2014 ;22(3):248-55

"Biocrystallography and Structural Biology of Therapeutic Targets", UMR 5086 CNRS Universite de Lyon, IBCP 7, passage du Vercors, 69367 Lyon cedex 7, France.

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http://dx.doi.org/10.2174/0929866522666141231111226DOI Listing
November 2015

Porcine endogenous retrovirus-A/C: biochemical properties of its integrase and susceptibility to raltegravir.

J Gen Virol 2015 Oct 9;96(10):3124-30. Epub 2015 Jul 9.

1​ ANSES, Ploufragan/Plouzané Laboratory, Viral Genetics and Bio-Security Unit, Université Européenne de Bretagne, Ploufragan, France.

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http://www.microbiologyresearch.org/content/journal/jgv/10.1
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http://dx.doi.org/10.1099/jgv.0.000236DOI Listing
October 2015

The substrate-free and -bound crystal structures of the duplicated taurocyamine kinase from the human parasite Schistosoma mansoni.

J Biol Chem 2015 May 2;290(20):12951-63. Epub 2015 Apr 2.

From the Institut de Biologie et Chimie des Protéines, BMSSI-IBCP, UMR 5086 CNRS Université Lyon 1, 7, Passage du Vercors, 69367 Lyon Cedex 07, France and

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http://dx.doi.org/10.1074/jbc.M114.628909DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432309PMC
May 2015

Substrate recognition by the bacterial type II secretion system: more than a simple interaction.

Mol Microbiol 2014 Oct 31;94(1):126-40. Epub 2014 Aug 31.

Université Lyon 1, F-69622, Lyon, France; INSA-Lyon, F-69621, Villeurbanne, France; CNRS, UMR5240, Microbiologie Adaptation et Pathogénie, F-69622, Lyon, France.

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http://dx.doi.org/10.1111/mmi.12744DOI Listing
October 2014

Deciphering key features in protein structures with the new ENDscript server.

Nucleic Acids Res 2014 Jul 21;42(Web Server issue):W320-4. Epub 2014 Apr 21.

Equipe de Biocristallographie et Biologie Structurale des Cibles Thérapeutiques, IBCP-BMSSI, UMR 5086 CNRS Université de Lyon, SFR BioSciences Gerland-Lyon Sud, 7 Passage du Vercors, 69367 Lyon Cedex 07, France

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http://dx.doi.org/10.1093/nar/gku316DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086106PMC
July 2014

Biophysical characterization of the feline immunodeficiency virus p24 capsid protein conformation and in vitro capsid assembly.

PLoS One 2013 15;8(2):e56424. Epub 2013 Feb 15.

Laboratoire de Biocristallographie et Biologie Structurale des Cibles Thérapeutiques, IBCP-BMSSI, UMR 5086 CNRS Université de Lyon, SFR BioSciences Gerland-Lyon Sud, Lyon, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0056424PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574121PMC
August 2013

In vitro functional analyses of the human immunodeficiency virus type 1 (HIV-1) integrase mutants give new insights into the intasome assembly.

Virology 2013 May 6;439(2):97-104. Epub 2013 Mar 6.

Laboratoire Rétrovirus et Pathologie Comparée, UMR 754, Institut National de la Recherche Agronomique, Université de Lyon, Université Lyon 1, Lyon, France.

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http://dx.doi.org/10.1016/j.virol.2013.02.001DOI Listing
May 2013

The molecular mechanism of thermostable α-galactosidases AgaA and AgaB explained by x-ray crystallography and mutational studies.

J Biol Chem 2012 Nov 25;287(47):39642-52. Epub 2012 Sep 25.

Biocrystallography and Structural Biology of Therapeutic Targets, Bases Moléculaires et Structurales des Systèmes Infectieux-Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS, Université de Lyon 1, 7 passage du Vercors, 69367 Lyon Cedex 07, France.

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http://dx.doi.org/10.1074/jbc.M112.394114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3501081PMC
November 2012

A crystal structure of the catalytic core domain of an avian sarcoma and leukemia virus integrase suggests an alternate dimeric assembly.

PLoS One 2011 9;6(8):e23032. Epub 2011 Aug 9.

Biocristallographie et Biologie Structurale des Cibles Thérapeutiques, Institut de Biologie et Chimie des Protéines, UMR 5086 BMSSI-Centre National de la Recherche Scientifique/Université de Lyon, Lyon, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023032PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3153463PMC
February 2012

Fab'-induced folding of antigenic N-terminal peptides from intrinsically disordered HIV-1 Tat revealed by X-ray crystallography.

J Mol Biol 2011 Jan 28;405(1):33-42. Epub 2010 Oct 28.

Université de Lyon, IFR128 BioSciences Gerland-Lyon Sud, 7 Passage du Vercors, France.

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http://dx.doi.org/10.1016/j.jmb.2010.10.033DOI Listing
January 2011

The extended conformation of the 2.9-Å crystal structure of the three-PASTA domain of a Ser/Thr kinase from the human pathogen Staphylococcus aureus.

J Mol Biol 2010 Dec 19;404(5):847-58. Epub 2010 Oct 19.

Laboratoire de Phosphorylation des Protéines et Pathogénie Bactérienne, Institut de Biologie et Chimie des Protéines, UMR 5086-CNRS/Université de Lyon, IFR128 BioSciences Gerland Lyon Sud, 7 Passage du Vercors, F-69367 Lyon cedex 07, France.

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http://dx.doi.org/10.1016/j.jmb.2010.10.012DOI Listing
December 2010

Crystallization and initial X-ray diffraction study of the three PASTA domains of the Ser/Thr kinase Stk1 from the human pathogen Staphylococcus aureus.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 Nov 30;65(Pt 11):1187-9. Epub 2009 Oct 30.

Institut de Biologie et Chimie des Protéines, UMR CNRS Université de Lyon, France.

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http://dx.doi.org/10.1107/S174430910904250XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2777055PMC
November 2009

Verdoheme formation in Proteus mirabilis catalase.

Biochim Biophys Acta 2009 Aug 24;1790(8):741-53. Epub 2009 Apr 24.

INSERM U866, Dijon, France.

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http://dx.doi.org/10.1016/j.bbagen.2009.04.010DOI Listing
August 2009

Crystallization and X-ray analysis of the Schistosoma mansoni guanidino kinase.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 Sep 20;64(Pt 9):854-7. Epub 2008 Aug 20.

Institut de Chimie et Biochimie Moléculaire et Supramoléculaire, CNRS UMR 5246 et Université de Lyon, F-69622 Villeurbanne, France.

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http://dx.doi.org/10.1107/S1744309108025979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2531260PMC
September 2008

The crystal structure of pectate lyase peli from soft rot pathogen Erwinia chrysanthemi in complex with its substrate.

J Biol Chem 2008 Jun 22;283(26):18260-8. Epub 2008 Apr 22.

Laboratoire de BioCristallographie, Institut de Biologie et Chimie des Protéines, CNRS et Université de Lyon, UMR 5086, IFR 128 BioSciences Gerland-Lyon Sud, Lyon, France.

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http://dx.doi.org/10.1074/jbc.M709931200DOI Listing
June 2008

Mapping of immunogenic and protein-interacting regions at the surface of the seven-bladed beta-propeller domain of the HIV-1 cellular interactor EED.

Virol J 2008 Feb 27;5:32. Epub 2008 Feb 27.

Laboratoire de Virologie & Pathologie Humaine, Université Lyon I & CNRS FRE-3011, Faculté de Médecine Laennec, 7 rue Guillaume Paradin, 69372 Lyon Cedex 08, France.

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http://virologyj.biomedcentral.com/articles/10.1186/1743-422
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http://dx.doi.org/10.1186/1743-422X-5-32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2292171PMC
February 2008

Tyrosine-kinase Wzc from Escherichia coli possesses an ATPase activity regulated by autophosphorylation.

FEMS Microbiol Lett 2007 Sep 12;274(2):252-9. Epub 2007 Jul 12.

Institute of Microbiology and Immunobiology, University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.1111/j.1574-6968.2007.00841.xDOI Listing
September 2007

Structure of a d(TGGGGT) quadruplex crystallized in the presence of Li+ ions.

Acta Crystallogr D Biol Crystallogr 2007 Jun 15;63(Pt 6):682-8. Epub 2007 May 15.

Laboratoire de BioCristallographie, Institut de Biologie et Chimie des Protéines, CNRS-UCBL, UMR 5086, IFR128 BioSciences Lyon-Gerland, 7 Passage du Vercors, 69007 Lyon, France.

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http://dx.doi.org/10.1107/S0907444907013315DOI Listing
June 2007

Direct evidence for the modulation of the activity of the Erwinia chrysanthemi quorum-sensing regulator ExpR by acylhomoserine lactone pheromone.

J Biol Chem 2006 Oct 10;281(40):29972-87. Epub 2006 Jul 10.

Unité de Microbiologie et Génétique, Unité Mixte de Recherche CNRS-Université Lyon 1-Institut National des Sciences Appliquées de Lyon 5122, Domaine Scientifique de la Doua, bâtiment André Lwoff 10 rue Raphaël Dubois, 69622 Villeurbanne Cedex, France.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M601666200
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http://dx.doi.org/10.1074/jbc.M601666200DOI Listing
October 2006

Structure of a full length psychrophilic cellulase from Pseudoalteromonas haloplanktis revealed by X-ray diffraction and small angle X-ray scattering.

J Mol Biol 2005 May 25;348(5):1211-24. Epub 2005 Mar 25.

Laboratoire de BioCristallographie, Institut de Biologie et Chimie des Protéines, CNRS et Université Claude Bernard Lyon 1, UMR 5086, IFR 128 Biosciences Lyon-Gerland, 7 Passage du Vercors, F-69367 Lyon Cedex 07, France.

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http://linkinghub.elsevier.com/retrieve/pii/S002228360500295
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http://dx.doi.org/10.1016/j.jmb.2005.03.026DOI Listing
May 2005

N-Sulfonyl homoserine lactones as antagonists of bacterial quorum sensing.

Bioorg Med Chem Lett 2004 Oct;14(20):5145-9

Unité de Microbiologie et Génétique, UMR CNRS-INSA-UCB 5122, Bât. A. Lwoff, UCB, 69622 Villeurbanne, France.

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http://dx.doi.org/10.1016/j.bmcl.2004.07.088DOI Listing
October 2004

Crystallization of the pectate lyase PelI from Erwinia chrysanthemi and SAD phasing of a gold derivative.

Acta Crystallogr D Biol Crystallogr 2004 Jan 18;60(Pt 1):190-2. Epub 2003 Dec 18.

Composante INSA de l'Unité de Microbiologie et Génétique, UMR 5122 CNRS-UCBL-INSA, Bâtiment A. Lwoff, 10 Rue R. Dubois, 69622 Villeurbanne, France.

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http://dx.doi.org/10.1107/s0907444903026222DOI Listing
January 2004

Mutational analyses of the core domain of Avian Leukemia and Sarcoma Viruses integrase: critical residues for concerted integration and multimerization.

Virology 2004 Jan;318(2):566-81

Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Claude Bernard, Lyon, France.

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http://linkinghub.elsevier.com/retrieve/pii/S004268220300732
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http://dx.doi.org/10.1016/j.virol.2003.09.037DOI Listing
January 2004

Structural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid.

Acta Crystallogr D Biol Crystallogr 2003 Dec 27;59(Pt 12):2163-8. Epub 2003 Nov 27.

Avidis S.A., Biopôle Clermont-Limagne, 63360 Saint-Beauzire, France.

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http://dx.doi.org/10.1107/s0907444903019620DOI Listing
December 2003

ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins.

Nucleic Acids Res 2003 Jul;31(13):3320-3

Laboratoire de BioCristallographie, IBCP-CNRS UMR 5086 UCBL, 7 passage du Vercors, 69367 Lyon Cedex 07, France.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168963PMC
http://dx.doi.org/10.1093/nar/gkg556DOI Listing
July 2003

Probing the role of divalent metal ions in a bacterial psychrophilic metalloprotease: binding studies of an enzyme in the crystalline state by x-ray crystallography.

J Bacteriol 2003 Jul;185(14):4195-203

Laboratoire de BioCristallographie, Institut de Biologie et Chimie des Protéines, UMR 5086, CNRS-Université Claude Bernard Lyon 1, 69367 Lyon Cedex 07, France.

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http://jb.asm.org/content/185/14/4195.full.pdf
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC164877PMC
http://dx.doi.org/10.1128/jb.185.14.4195-4203.2003DOI Listing
July 2003

ENDscript: a workflow to display sequence and structure information.

Bioinformatics 2002 May;18(5):767-8

Laboratoire de Bio-Cristallographie, IBCP-CNRS UMR 5086, 7 passage du Vercors, 69367 Lyon Cedex 07, France.

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http://dx.doi.org/10.1093/bioinformatics/18.5.767DOI Listing
May 2002