Paolo Ribeca

Paolo Ribeca

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Paolo Ribeca

Paolo Ribeca

Publications by authors named "Paolo Ribeca"

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26Publications

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Differential gene regulation underlies variation in melanic plumage coloration in the dark-eyed junco (Junco hyemalis).

Mol Ecol 2018 11 22;27(22):4501-4515. Epub 2018 Oct 22.

National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain.

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http://dx.doi.org/10.1111/mec.14878DOI Listing
November 2018

The Site Frequency/Dosage Spectrum of Autopolyploid Populations.

Front Genet 2018 23;9:480. Epub 2018 Oct 23.

Centre for Research in Agricultural Genomics, Barcelona, Spain.

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http://dx.doi.org/10.3389/fgene.2018.00480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6207136PMC
October 2018

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.

BMC Genomics 2017 01 3;18(1). Epub 2017 Jan 3.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.

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http://dx.doi.org/10.1186/s12864-016-3404-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209911PMC
January 2017

CARGO: effective format-free compressed storage of genomic information.

Nucleic Acids Res 2016 07 29;44(12):e114. Epub 2016 Apr 29.

Algorithm Development, Centro Nacional de Análisis Genómico, Carrer Baldiri i Reixac 4, Barcelona 08028, Spain Integrative Biology, The Pirbright Institute, Ash Road, Pirbright, Woking, GU24 0NF, United Kingdom

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http://dx.doi.org/10.1093/nar/gkw318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937321PMC
July 2016

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncomms10001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682041PMC
December 2015

Efficient Alignment of Illumina-Like High-Throughput Sequencing Reads with the GEnomic Multi-tool (GEM) Mapper.

Curr Protoc Bioinformatics 2015 Jun 19;50:11.13.1-20. Epub 2015 Jun 19.

Centro Nacional de Análisis Genómico, Barcelona, Spain.

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http://dx.doi.org/10.1002/0471250953.bi1113s50DOI Listing
June 2015

The GEM mapper: fast, accurate and versatile alignment by filtration.

Nat Methods 2012 Dec 28;9(12):1185-8. Epub 2012 Oct 28.

Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain.

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http://www.nature.com/articles/nmeth.2221
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http://dx.doi.org/10.1038/nmeth.2221DOI Listing
December 2012

Modelling and simulating generic RNA-Seq experiments with the flux simulator.

Nucleic Acids Res 2012 Nov 7;40(20):10073-83. Epub 2012 Sep 7.

Bioinformatics and Genomics Program, Centre de Regulació Genòmica (CRG), 08003 Barcelona, Spain.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gks666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488205PMC
November 2012

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

Fast computation and applications of genome mappability.

PLoS One 2012 19;7(1):e30377. Epub 2012 Jan 19.

Institut de Génétique et Développement (IGDR), Université Rennes 1, Rennes, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030377PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261895PMC
June 2012

Computational challenges of sequence classification in microbiomic data.

Brief Bioinform 2011 Nov 18;12(6):614-25. Epub 2011 Apr 18.

Spanish National Center for Genomic Analysis (CNAG), Barcelona, Spain.

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http://dx.doi.org/10.1093/bib/bbr019DOI Listing
November 2011

A more precise characterization of chaperonin substrates.

Bioinformatics 2010 Jul 2;26(14):1685-9. Epub 2010 Jun 2.

CNAG Centro Nacional de Análisis Genómico, Parc Cientific de Barcelona, Baldiri Reixac 4, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btq287DOI Listing
July 2010

Faster exact Markovian probability functions for motif occurrences: a DFA-only approach.

Bioinformatics 2008 Dec 9;24(24):2839-48. Epub 2008 Oct 9.

Bioinformatics and Genomics Unit, Center for Genomic Regulation, C/ Dr.Aiguader 88, E08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btn525DOI Listing
December 2008

Topology of pseudoknotted homopolymers.

Phys Rev E Stat Nonlin Soft Matter Phys 2006 Mar 3;73(3 Pt 1):031902. Epub 2006 Mar 3.

Service de Physique Théorique, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France.

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https://link.aps.org/doi/10.1103/PhysRevE.73.031902
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http://dx.doi.org/10.1103/PhysRevE.73.031902DOI Listing
March 2006