Publications by authors named "Paola Oliveri"

44Publications

Unravelling the evolutionary history of kisspeptin.

Elife 2020 Jun 15;9. Epub 2020 Jun 15.

Centre for Life's Origins and Evolution, University College London, London, United Kingdom.

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http://dx.doi.org/10.7554/eLife.58599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7295571PMC
June 2020

Extracellular matrix gene expression during arm regeneration in Amphiura filiformis.

Cell Tissue Res 2020 Sep 30;381(3):411-426. Epub 2020 Apr 30.

Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London, WC1E 6BT,, UK.

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http://dx.doi.org/10.1007/s00441-020-03201-0DOI Listing
September 2020

A conceptual history of the "regulatory genome": From Theodor Boveri to Eric Davidson.

Mar Genomics 2019 Apr 28;44:24-31. Epub 2018 Nov 28.

Departament de Genètica, Universitat de Barcelona, Av. Diagonal 645, 08028 Barcelona, Spain; Institut Català de Recerca i Estudis Avancats (ICREA), Barcelona, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.margen.2018.11.003DOI Listing
April 2019

Neuropeptidergic Systems in Pluteus Larvae of the Sea Urchin : Neurochemical Complexity in a "Simple" Nervous System.

Front Endocrinol (Lausanne) 2018 25;9:628. Epub 2018 Oct 25.

Centre for Life's Origins and Evolution, Research Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.

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https://www.frontiersin.org/article/10.3389/fendo.2018.00628
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http://dx.doi.org/10.3389/fendo.2018.00628DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6209648PMC
October 2018

Regeneration in Stellate Echinoderms: Crinoidea, Asteroidea and Ophiuroidea.

Results Probl Cell Differ 2018;65:285-320

Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy.

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http://link.springer.com/10.1007/978-3-319-92486-1_14
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http://dx.doi.org/10.1007/978-3-319-92486-1_14DOI Listing
July 2019

Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution.

Genome Biol 2018 02 28;19(1):26. Epub 2018 Feb 28.

Research Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London, WC1E 6BT, UK.

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http://dx.doi.org/10.1186/s13059-018-1402-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831733PMC
February 2018

Fundamental aspects of arm repair phase in two echinoderm models.

Dev Biol 2018 01 25;433(2):297-309. Epub 2017 Dec 25.

Dipartimento di Bioscienze, Università degli Studi di Milano, via Celoria, 26, 20133 Milano, Italy; Center for Complexity&Biosystems, Dipartimento di Fisica, Università degli Studi di Milano, via Celoria, 16, 20133 Milano, Italy; Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, via Celoria, 2, 20133 Milano, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2017.09.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7274842PMC
January 2018

Skeletal regeneration in the brittle star Amphiura filiformis.

Front Zool 2016 22;13:18. Epub 2016 Apr 22.

Department of Genetics, Evolution and Environment, University College London, London, UK ; Research Department of Genetics, Evolution and Environment, University College London, Room 426, Darwin Building, Gower Street, London, WC1E 6BT UK.

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http://dx.doi.org/10.1186/s12983-016-0149-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841056PMC
April 2016

Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks.

Evodevo 2016 11;7. Epub 2016 Jan 11.

Research Department of Genetics, Evolution and Environment, University College London, Room 426, Darwin Building, Gower Street, London, WC1E 6BT UK.

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http://dx.doi.org/10.1186/s13227-015-0039-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709884PMC
January 2016

Evolution of lineage-specific functions in ancient cis-regulatory modules.

Open Biol 2015 Nov;5(11)

Division of Systems Biology, Francis Crick Institute, Mill Hill laboratories, The Ridgeway, Mill Hill, London NW7 1AA, UK

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http://dx.doi.org/10.1098/rsob.150079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4680567PMC
November 2015

Discovery of sea urchin NGFFFamide receptor unites a bilaterian neuropeptide family.

Open Biol 2015 Apr;5(4):150030

School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK

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http://dx.doi.org/10.1098/rsob.150030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4422128PMC
April 2015

A cnidarian homologue of an insect gustatory receptor functions in developmental body patterning.

Nat Commun 2015 Feb 18;6:6243. Epub 2015 Feb 18.

Faculty of Biology and Medicine, Center for Integrative Genomics, University of Lausanne, Genopode Building, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1038/ncomms7243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4374167PMC
February 2015

Molecular characterization of the apical organ of the anthozoan Nematostella vectensis.

Dev Biol 2015 Feb 3;398(1):120-33. Epub 2014 Dec 3.

Sars Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgt 55, 5008 Bergen, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2014.11.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4300403PMC
February 2015

Phylogenomic analysis of echinoderm class relationships supports Asterozoa.

Proc Biol Sci 2014 Jul;281(1786)

CNRS, Laboratoire de Biologie du Développement de Villefranche-sur-mer (LBDV), Observatoire Océanographique, Villefranche-sur-mer 06230, France Sorbonne Universites, UPMC Univ Paris 06, Laboratoire de Biologie du Developpement de Villefranche-sur-mer, Observatoire Oceanographique, Villefranche-sur-mer 06230, France

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http://dx.doi.org/10.1098/rspb.2014.0479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046411PMC
July 2014

The Cryptochrome/Photolyase Family in aquatic organisms.

Mar Genomics 2014 Apr 23;14:23-37. Epub 2014 Feb 23.

Sorbonne Universités, UPMC Univ Paris 06, UMR 7238, Computational and Quantitative Biology, F-75006 Paris, France; CNRS, UMR 7238, Computational and Quantitative Biology, F-75006 Paris, France.

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http://dx.doi.org/10.1016/j.margen.2014.02.001DOI Listing
April 2014

Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors.

Evodevo 2013 Dec 2;4(1):33. Epub 2013 Dec 2.

Cellular and Developmental Biology, Stazione Zoologica Anton Dohrn, Napoli 80121, Italy.

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http://dx.doi.org/10.1186/2041-9139-4-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4175510PMC
December 2013

Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis.

Gene Expr Patterns 2013 Dec 16;13(8):464-72. Epub 2013 Sep 16.

Research Department of Genetics, Evolution and Environment, UCL, Gower Street, London WC1E 6BT, UK.

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http://dx.doi.org/10.1016/j.gep.2013.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3838619PMC
December 2013

An ancient role for Gata-1/2/3 and Scl transcription factor homologs in the development of immunocytes.

Dev Biol 2013 Oct 20;382(1):280-92. Epub 2013 Jun 20.

Sunnybrook Research Institute and Department of Medical Biophysics, University of Toronto, 2075 Bayview Avenue, Room S-126B, Toronto, Ontario, Canada M4N 3M5.

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http://dx.doi.org/10.1016/j.ydbio.2013.06.019DOI Listing
October 2013

A protocol for unraveling gene regulatory networks.

Nat Protoc 2008 ;3(12):1876-87

Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.

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http://dx.doi.org/10.1038/nprot.2008.187DOI Listing
January 2009

Global regulatory logic for specification of an embryonic cell lineage.

Proc Natl Acad Sci U S A 2008 Apr 14;105(16):5955-62. Epub 2008 Apr 14.

Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0711220105
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http://dx.doi.org/10.1073/pnas.0711220105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2329687PMC
April 2008

Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development.

Dev Biol 2008 Feb 14;314(2):276-86. Epub 2008 Jan 14.

Providence Institute of Molecular Oogenesis, Department of Molecular Biology, Cell Biology and Biochemistry, 185 Meeting Street, Box G, Brown University, Providence, RI 02912, USA.

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http://dx.doi.org/10.1016/j.ydbio.2007.11.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2692673PMC
February 2008

A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres.

Proc Natl Acad Sci U S A 2007 Jul 16;104(30):12383-8. Epub 2007 Jul 16.

Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0705324104
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http://dx.doi.org/10.1073/pnas.0705324104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1941478PMC
July 2007

Development. Built to run, not fail.

Science 2007 Mar;315(5818):1510-1

Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1126/science.1140979DOI Listing
March 2007

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

Sea urchin Forkhead gene family: phylogeny and embryonic expression.

Dev Biol 2006 Dec 22;300(1):49-62. Epub 2006 Sep 22.

Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1016/j.ydbio.2006.09.031DOI Listing
December 2006

Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo.

Development 2006 Nov;133(21):4173-81

Division of Biology, 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dev.biologists.org/cgi/doi/10.1242/dev.02577
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http://dx.doi.org/10.1242/dev.02577DOI Listing
November 2006

Gene regulatory network analysis in sea urchin embryos.

Methods Cell Biol 2004 ;74:775-94

Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.

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http://dx.doi.org/10.1016/s0091-679x(04)74032-7DOI Listing
February 2005

Gene regulatory network controlling embryonic specification in the sea urchin.

Curr Opin Genet Dev 2004 Aug;14(4):351-60

Division of Biology 156-29, California Institute of Technology, Pasadena, California 91125, USA.

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http://dx.doi.org/10.1016/j.gde.2004.06.004DOI Listing
August 2004

Small bilaterian fossils from 40 to 55 million years before the cambrian.

Science 2004 Jul 3;305(5681):218-22. Epub 2004 Jun 3.

Nanjing Institute of Geology and Paleontology, Nanjing 210008, China.

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http://dx.doi.org/10.1126/science.1099213DOI Listing
July 2004

cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin.

Gene Expr Patterns 2004 Mar;4(2):205-13

Division of Biology 156-29, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1016/j.modgep.2003.08.007DOI Listing
March 2004

Activation of pmar1 controls specification of micromeres in the sea urchin embryo.

Dev Biol 2003 Jun;258(1):32-43

Division of Biology, 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1016/s0012-1606(03)00108-8DOI Listing
June 2003

Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo.

Development 2003 Jul;130(13):2917-28

Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1242/dev.00511DOI Listing
July 2003

Quantitative imaging of cis-regulatory reporters in living embryos.

Proc Natl Acad Sci U S A 2002 Oct 17;99(20):12895-900. Epub 2002 Sep 17.

Divisions of Biology and Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1073/pnas.202483199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC130556PMC
October 2002

Precambrian animal life: probable developmental and adult cnidarian forms from Southwest China.

Dev Biol 2002 Aug;248(1):182-96

Nanjing Institute of Geology and Paleontology, Nanjing 210008, China.

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http://dx.doi.org/10.1006/dbio.2002.0714DOI Listing
August 2002

A regulatory gene network that directs micromere specification in the sea urchin embryo.

Dev Biol 2002 Jun;246(1):209-28

Division of Biology 156-29, California Institute of Technology, Pasadena 91125, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S001216060290627
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http://dx.doi.org/10.1006/dbio.2002.0627DOI Listing
June 2002