Publications by authors named "Pankaj Jaiswal"

63Publications

Quantitative analysis of subsp proteome in response to antibiotics and during exposure to different environmental conditions.

Clin Proteomics 2019 13;16:39. Epub 2019 Nov 13.

1Department of Biomedical Sciences, Carlson College of Veterinary Medicine, Oregon State University, Corvallis, USA.

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http://dx.doi.org/10.1186/s12014-019-9260-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6852889PMC
November 2019

The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.

Front Plant Sci 2019 4;10:631. Epub 2019 Jun 4.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States.

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http://dx.doi.org/10.3389/fpls.2019.00631DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558174PMC
June 2019

Involving community in genes and pathway curation.

Database (Oxford) 2019 01 1;2019. Epub 2019 Jan 1.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.

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http://dx.doi.org/10.1093/database/bay146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334007PMC
January 2019

Variant Effect Prediction Analysis Using Resources Available at Gramene Database.

Methods Mol Biol 2017 ;1533:279-297

Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR, 97331-2902, USA.

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http://dx.doi.org/10.1007/978-1-4939-6658-5_17DOI Listing
January 2018

Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.

Methods Mol Biol 2017 ;1533:241-256

Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR, 97331-2902, USA.

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http://dx.doi.org/10.1007/978-1-4939-6658-5_14DOI Listing
January 2018

Transient Trifascicular Block in Severe Hyperkalemia.

J Assoc Physicians India 2015 Sep;63(9):74-5

Resident, Department of Medicine, MLB Medical College, Jhansi, Uttar Pradesh.

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September 2015

FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.

Front Plant Sci 2016 4;7:242. Epub 2016 Mar 4.

Department of Botany and Plant Pathology, Oregon State University Corvallis, OR, USA.

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http://dx.doi.org/10.3389/fpls.2016.00242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777718PMC
March 2016

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.

G3 (Bethesda) 2016 Jan 22;6(3):731-41. Epub 2016 Jan 22.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331.

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http://dx.doi.org/10.1534/g3.116.027045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777134PMC
January 2016

Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.

Methods Mol Biol 2016 ;1374:141-63

Cold Spring Harbor Laboratory, One Bungtown Road, Cold Spring Harbor, NY, 11724, USA.

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http://dx.doi.org/10.1007/978-1-4939-3167-5_7DOI Listing
May 2016

The Plant Ontology: A Tool for Plant Genomics.

Methods Mol Biol 2016 ;1374:89-114

Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR, 97331-2902, USA.

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http://link.springer.com/10.1007/978-1-4939-3167-5_5
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http://dx.doi.org/10.1007/978-1-4939-3167-5_5DOI Listing
May 2016

Plant Pathway Databases.

Methods Mol Biol 2016 ;1374:71-87

IBMG: Institute for Biology I, RWTH Aachen University, Worringer Weg 2, 52074, Aachen, Germany.

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http://dx.doi.org/10.1007/978-1-4939-3167-5_4DOI Listing
May 2016

Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.

Mol Plant 2015 Feb 8;8(2):207-27. Epub 2015 Jan 8.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA; Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA; Donald Danforth Plant Science Center, Saint Louis, MO 63132, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2014.10.011DOI Listing
February 2015

AISO: Annotation of Image Segments with Ontologies.

J Biomed Semantics 2014 17;5(1):50. Epub 2014 Dec 17.

Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331-2902 USA.

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http://dx.doi.org/10.1186/2041-1480-5-50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4290088PMC
January 2015

Finding our way through phenotypes.

PLoS Biol 2015 Jan 6;13(1):e1002033. Epub 2015 Jan 6.

Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285398PMC
January 2015

VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera).

Front Plant Sci 2014 9;5:644. Epub 2014 Dec 9.

Department of Botany and Plant Pathology, Oregon State University Corvallis, OR, USA.

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http://dx.doi.org/10.3389/fpls.2014.00644DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260676PMC
December 2014

Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes.

PLoS One 2014 13;9(11):e112870. Epub 2014 Nov 13.

Department of Horticulture, Washington State University, Pullman, WA, United States of America; Molecular Plant Science Graduate Program, Washington State University, Pullman, WA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0112870PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231079PMC
December 2015

Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis.

Mol Plant 2014 Nov 3. Epub 2014 Nov 3.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, USA Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, 97331, USA Donald Danforth Plant Science Center, Saint Louis, Missouri, 63132, USA

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http://dx.doi.org/10.1093/mp/ssu130DOI Listing
November 2014

The floral transcriptome of Eucalyptus grandis.

New Phytol 2015 Jun 29;206(4):1406-22. Epub 2014 Oct 29.

Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR, 97331, USA.

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http://dx.doi.org/10.1111/nph.13077DOI Listing
June 2015

The genome of Eucalyptus grandis.

Nature 2014 Jun 11;510(7505):356-62. Epub 2014 Jun 11.

1] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA [2] HudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, Alabama 35801, USA.

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http://dx.doi.org/10.1038/nature13308DOI Listing
June 2014

De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum.

PLoS One 2014 12;9(5):e96855. Epub 2014 May 12.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America; Department of Crop and Soil Science, Oregon State University, Corvallis, Oregon, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0096855PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4018402PMC
January 2015

WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks.

Rice (N Y) 2013 May 29;6(1):14. Epub 2013 May 29.

Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331-2902, USA.

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http://dx.doi.org/10.1186/1939-8433-6-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4883732PMC
May 2013

Gramene 2013: comparative plant genomics resources.

Nucleic Acids Res 2014 Jan 11;42(Database issue):D1193-9. Epub 2013 Nov 11.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA, Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA, EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK, Informatics and Bio-computing Program, Ontario Institute of Cancer Research, Toronto M5G 1L7, Canada, Department of Biochemistry & Molecular Pharmacology, NYU School of Medicine, New York, NY 10016, USA and NAA Plant, Soil & Nutrition Laboratory Research Unit, USDA-ARS, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1093/nar/gkt1110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964986PMC
January 2014

Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae).

Appl Plant Sci 2013 Mar 5;1(3). Epub 2013 Mar 5.

Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, 2082 Cordley Hall, Oregon State University, Corvallis, Oregon 97331 USA.

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http://dx.doi.org/10.3732/apps.1200011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105277PMC
March 2013

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.

Database (Oxford) 2011 30;2011:bar037. Epub 2011 Sep 30.

National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India.

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http://dx.doi.org/10.1093/database/bar037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184618PMC
January 2012

Expression, splicing, and evolution of the myosin gene family in plants.

Plant Physiol 2011 Mar 13;155(3):1191-204. Epub 2011 Jan 13.

Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA.

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http://dx.doi.org/10.1104/pp.110.170720DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3046578PMC
March 2011

Gramene database: a hub for comparative plant genomics.

Authors:
Pankaj Jaiswal

Methods Mol Biol 2011 ;678:247-75

Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.

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http://dx.doi.org/10.1007/978-1-60761-682-5_18DOI Listing
January 2011

Gramene QTL database: development, content and applications.

Database (Oxford) 2009 8;2009:bap005. Epub 2009 May 8.

Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853-1901, USA and Cold Spring Harbor Labs, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1093/database/bap005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790302PMC
May 2009

Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein.

Proc Natl Acad Sci U S A 2008 Jul 20;105(26):9123-8. Epub 2008 Jun 20.

Laboratoire Plastes et Differénciation Cellulaire, Université Joseph Fourier and Centre National de la Recherche Scientifique, B.P. 53, F-38041 Grenoble Cedex 9, France.

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http://dx.doi.org/10.1073/pnas.0800909105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2449375PMC
July 2008

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase.

Plant Cell Physiol 2005 Jan 19;46(1):63-8. Epub 2005 Jan 19.

Center for Genetic Resource Information, National Institute of Genetics, Mishima, Shizuoka, 411-8540 Japan.

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http://dx.doi.org/10.1093/pcp/pci505DOI Listing
January 2005

A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.

Plant J 2002 Jul;31(2):199-209

Department of Biochemistry, University of Nebraska-Lincoln, N258 Beadle Center, Lincoln, NE 68588-0664, USA.

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http://dx.doi.org/10.1046/j.1365-313x.2002.01344.xDOI Listing
July 2002

Gramene: a resource for comparative grass genomics.

Nucleic Acids Res 2002 Jan;30(1):103-5

Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99157PMC
http://dx.doi.org/10.1093/nar/30.1.103DOI Listing
January 2002