Publications by authors named "Pablo Meyer"

34Publications

Recent smell loss is the best predictor of COVID-19: a preregistered, cross-sectional study.

Authors:
Richard C Gerkin Kathrin Ohla Maria Geraldine Veldhuizen Paule V Joseph Christine E Kelly Alyssa J Bakke Kimberley E Steele Michael C Farruggia Robert Pellegrino Marta Y Pepino Cédric Bouysset Graciela M Soler Veronica Pereda-Loth Michele Dibattista Keiland W Cooper Ilja Croijmans Antonella Di Pizio M Hakan Ozdener Alexander W Fjaeldstad Cailu Lin Mari A Sandell Preet B Singh V Evelyn Brindha Shannon B Olsson Luis R Saraiva Gaurav Ahuja Mohammed K Alwashahi Surabhi Bhutani Anna D'Errico Marco A Fornazieri Jérôme Golebiowski Liang-Dar Hwang Lina Öztürk Eugeni Roura Sara Spinelli Katherine L Whitcroft Farhoud Faraji Florian Ph S Fischmeister Thomas Heinbockel Julien W Hsieh Caroline Huart Iordanis Konstantinidis Anna Menini Gabriella Morini Jonas K Olofsson Carl M Philpott Denis Pierron Vonnie D C Shields Vera V Voznessenskaya Javier Albayay Aytug Altundag Moustafa Bensafi María Adelaida Bock Orietta Calcinoni William Fredborg Christophe Laudamiel Juyun Lim Johan N Lundström Alberto Macchi Pablo Meyer Shima T Moein Enrique Santamaría Debarka Sengupta Paloma Paloma Domínguez Hüseyin Yanık Sanne Boesveldt Jasper H B de Groot Caterina Dinnella Jessica Freiherr Tatiana Laktionova Sajidxa Mariño Erminio Monteleone Alexia Nunez-Parra Olagunju Abdulrahman Marina Ritchie Thierry Thomas-Danguin Julie Walsh-Messinger Rashid Al Abri Rafieh Alizadeh Emmanuelle Bignon Elena Cantone Maria Paola Cecchini Jingguo Chen Maria Dolors Guàrdia Kara C Hoover Noam Karni Marta Navarro Alissa A Nolden Patricia Portillo Mazal Nicholas R Rowan Atiye Sarabi-Jamab Nicholas S Archer Ben Chen Elizabeth A Di Valerio Emma L Feeney Johannes Frasnelli Mackenzie Hannum Claire Hopkins Hadar Klein Coralie Mignot Carla Mucignat Yuping Ning Elif E Ozturk Mei Peng Ozlem Saatci Elizabeth A Sell Carol H Yan Raul Alfaro Cinzia Cecchetto Gérard Coureaud Riley D Herriman Jeb M Justice Pavan Kumar Kaushik Sachiko Koyama Jonathan B Overdevest Nicola Pirastu Vicente A Ramirez S Craig Roberts Barry C Smith Hongyuan Cao Hong Wang Patrick Balungwe Marius Baguma Thomas Hummel John E Hayes Danielle R Reed Masha Y Niv Steven D Munger Valentina Parma

medRxiv 2020 Jul 26. Epub 2020 Jul 26.

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http://dx.doi.org/10.1101/2020.07.22.20157263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386529PMC
July 2020

More Than Smell-COVID-19 Is Associated With Severe Impairment of Smell, Taste, and Chemesthesis.

Authors:
Valentina Parma Kathrin Ohla Maria G Veldhuizen Masha Y Niv Christine E Kelly Alyssa J Bakke Keiland W Cooper Cédric Bouysset Nicola Pirastu Michele Dibattista Rishemjit Kaur Marco Tullio Liuzza Marta Y Pepino Veronika Schöpf Veronica Pereda-Loth Shannon B Olsson Richard C Gerkin Paloma Rohlfs Domínguez Javier Albayay Michael C Farruggia Surabhi Bhutani Alexander W Fjaeldstad Ritesh Kumar Anna Menini Moustafa Bensafi Mari Sandell Iordanis Konstantinidis Antonella Di Pizio Federica Genovese Lina Öztürk Thierry Thomas-Danguin Johannes Frasnelli Sanne Boesveldt Özlem Saatci Luis R Saraiva Cailu Lin Jérôme Golebiowski Liang-Dar Hwang Mehmet Hakan Ozdener Maria Dolors Guàrdia Christophe Laudamiel Marina Ritchie Jan Havlícek Denis Pierron Eugeni Roura Marta Navarro Alissa A Nolden Juyun Lim Katherine L Whitcroft Lauren R Colquitt Camille Ferdenzi Evelyn V Brindha Aytug Altundag Alberto Macchi Alexia Nunez-Parra Zara M Patel Sébastien Fiorucci Carl M Philpott Barry C Smith Johan N Lundström Carla Mucignat Jane K Parker Mirjam van den Brink Michael Schmuker Florian Ph S Fischmeister Thomas Heinbockel Vonnie D C Shields Farhoud Faraji Enrique Santamaría William E A Fredborg Gabriella Morini Jonas K Olofsson Maryam Jalessi Noam Karni Anna D'Errico Rafieh Alizadeh Robert Pellegrino Pablo Meyer Caroline Huart Ben Chen Graciela M Soler Mohammed K Alwashahi Antje Welge-Lüssen Jessica Freiherr Jasper H B de Groot Hadar Klein Masako Okamoto Preet Bano Singh Julien W Hsieh Danielle R Reed Thomas Hummel Steven D Munger John E Hayes

Chem Senses 2020 10;45(7):609-622

Department of Food Science, The Pennsylvania State University, Erickson Food Science Building, University Park, PA, USA.

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http://dx.doi.org/10.1093/chemse/bjaa041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7337664PMC
October 2020

Mitochondrial origins of fractional control in regulated cell death.

Nat Commun 2019 03 21;10(1):1313. Epub 2019 Mar 21.

IBM T.J. Watson Research Center, 1101 Kitchawan Road, Yorktown Heights, NY, 10598, USA.

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http://dx.doi.org/10.1038/s41467-019-09275-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428895PMC
March 2019

Predicting natural language descriptions of mono-molecular odorants.

Nat Commun 2018 11 26;9(1):4979. Epub 2018 Nov 26.

Computational Biology Center, T.J. Watson IBM Research Laboratory, 1101 Kitchawan Rd, Yorktown Heights, NY, 10598, USA.

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http://dx.doi.org/10.1038/s41467-018-07439-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255800PMC
November 2018

Rethinking cancer: current challenges and opportunities in cancer research.

Dis Model Mech 2017 04;10(4):349-352

Icahn School of Medicine at Mount Sinai, Annenberg 25-40, Campus Box 1020, 1468 Madison Avenue, New York, NY 10029, USA

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http://dx.doi.org/10.1242/dmm.030007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399574PMC
April 2017

Advances in systems biology--New trends and perspectives.

Comput Biol Chem 2015 Dec 3;59 Pt B:1-2. Epub 2015 Sep 3.

Translational Systems Biology and Nanobiotechnology Group, IBM T.J. Watson Research Center, USA. Electronic address:

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http://dx.doi.org/10.1016/j.compbiolchem.2015.09.001DOI Listing
December 2015

Enzyme function is regulated by its localization.

Comput Biol Chem 2015 Dec 8;59 Pt B:113-22. Epub 2015 Aug 8.

IBM T. J. Watson Research Center, Yorktown Heights, NY 10598, United States. Electronic address:

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http://dx.doi.org/10.1016/j.compbiolchem.2015.08.004DOI Listing
December 2015

DREAMTools: a Python package for scoring collaborative challenges.

F1000Res 2015 9;4:1030. Epub 2015 Oct 9.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI),Wellcome Trust Genome Campus, Cambridge, UK; RWTH Aachen University Medical Hospital, Joint Research Centre for Computational Biomedicine (JRCCOMBINE), Aachen, Germany.

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http://dx.doi.org/10.12688/f1000research.7118.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837986PMC
May 2016

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Bioinformatics 2015 Feb 7;31(4):484-91. Epub 2014 Oct 7.

IBM Research, Computational Biology Center, Yorktown Heights, NY 10598, USA, ProtATonce Ltd, Scientific Park Lefkippos, Patriarchou Grigoriou & Neapoleos 15343 Ag. Paraskevi, Attiki, Greece, National Technical University of Athens, Heroon Polytechniou 9, Zografou, 15780, Greece and Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btu659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325542PMC
February 2015

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.

Bioinformatics 2015 Feb 17;31(4):471-83. Epub 2014 Sep 17.

IBM T.J. Watson Research Center, Computational Biology Center, Yorktown Heights, NY 10003, USA, Philip Morris International R&D, Philip Morris Products S.A., 2000 Neuchâtel, Switzerland, Telethon Institute of Genetics and Medicine, Via Pietro Castellino, 111, 80131 Naples, Italy, ProtATonce Ltd, Scientific Park Lefkippos, Patriarchou Grigoriou & Neapoleos 15343 Ag. Paraskevi, Attiki and National Technical University of Athens, Heroon Polytechniou 9, Zografou 15780, Greece.

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http://dx.doi.org/10.1093/bioinformatics/btu611DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325540PMC
February 2015

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets.

Bioinformatics 2015 Feb 24;31(4):492-500. Epub 2014 Aug 24.

Kavli Institute for Theoretical Physics, Kohn Hall, University of California, Santa Barbara, CA 93106, USA, Department of Physics, Department of Molecular Biology and Biochemistry, Busch Campus, Rutgers University, Piscataway, NJ 08854, USA, Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands and IBM T.J. Watson Research Center, Computational Biology, Yorktown Heights, NY 10003, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu569DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325538PMC
February 2015

Inter-species pathway perturbation prediction via data-driven detection of functional homology.

Bioinformatics 2015 Feb 22;31(4):501-8. Epub 2014 Aug 22.

Department of Biology, Center for Genomics & Systems Biology, New York University, New York, NY 10003, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD and Detroit, MI 48201, USA, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598, Computer Science Department, Courant institute of Mathematical Sciences, New York University, New York, NY 10012 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA Department of Biology, Center for Genomics & Systems Biology, New York University, New York, NY 10003, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD and Detroit, MI 48201, USA, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598, Computer Science Department, Courant institute of Mathematical Sciences, New York University, New York, NY 10012 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu570DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325539PMC
February 2015

Localization of aggregating proteins in bacteria depends on the rate of addition.

Front Microbiol 2014 6;5:418. Epub 2014 Aug 6.

Department of Physics, Simon Fraser University Burnaby, BC, Canada.

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http://dx.doi.org/10.3389/fmicb.2014.00418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4123723PMC
August 2014

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.

Bioinformatics 2015 Feb 23;31(4):462-70. Epub 2014 Jul 23.

Kavli Institute for Theoretical Physics, Kohn Hall, University of California, Santa Barbara, CA 93106, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD, and Detroit, MI 48201, USA, College of Plant Protection and College of Science, Hunan Agricultural University, Changsha, 410128, China, School of Computing, Clemson University, Clemson, SC 29634, USA, Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands, IBM T.J. Watson Research Center, Computational Biology Center, Yorktown Heights, NY 10003, Department of Molecular Biology and Biochemistry, Department of Physics and BioMaPS Institute, Rutgers University, Piscataway, NJ 08854 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA Kavli Institute for Theoretical Physics, Kohn Hall, University of California, Santa Barbara, CA 93106, Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD, and Detroit, MI 48201, USA, College of Plant Protection and College of Science, Hunan Agricultural University, Changsha, 410128, China, School of Computing, Clemson University, Clemson, SC 29634, USA, Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands, IBM T.J. Watson Research Center, Computational Biology Center, Yorktown Heights, NY 10003, Department of Molecular Biology and Biochemistry, Department of Physics and BioMaPS Institute, Rutgers University, Piscataway, NJ 08854 and Department of Computer Science, Wayne State University, Detroit, MI 48202, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu490DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325537PMC
February 2015

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Bioinformatics 2015 Feb 3;31(4):453-61. Epub 2014 Jul 3.

Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, 9700 AK Groningen, The Netherlands, University of California, Irvine, CA 92617, Department of Physics and Department of Molecular Biology and Biochemistry, Busch Campus, Rutgers University, Piscataway, NJ 08854, IBM T.J. Watson Research Center, Computational Biology, Yorktown Heights, NY 10598, Kavli Institute for Theoretical Physics, University of California, Santa Barbara, CA 93106, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325536PMC
February 2015

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.

Bioinformatics 2013 Nov 20;29(22):2892-9. Epub 2013 Aug 20.

Department of Computer Science, Wayne State University, Perinatology Research Branch, NICHD/NIH, Detroit, MI 48201, USA, The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto 38068, Italy, ETH Zurich, Zurich 8092, Switzerland, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598, USA and Philip Morris International, Research & Development, Neuchâtel CH-2000, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btt492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3810846PMC
November 2013

Cell wall synthesis is necessary for membrane dynamics during sporulation of Bacillus subtilis.

Mol Microbiol 2010 May 1;76(4):956-70. Epub 2010 Apr 1.

Department of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.

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http://doi.wiley.com/10.1111/j.1365-2958.2010.07155.x
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http://dx.doi.org/10.1111/j.1365-2958.2010.07155.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2893020PMC
May 2010

Interactions between late-acting proteins required for peptidoglycan synthesis during sporulation.

J Mol Biol 2010 Jun 24;399(4):547-61. Epub 2010 Apr 24.

Department of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/j.jmb.2010.04.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2904850PMC
June 2010

The 2006 Pittendrigh/Aschoff lecture: new roles for old proteins in the Drosophila circadian clock.

J Biol Rhythms 2007 Aug;22(4):283-90

Laboratory of Genetics, The Rockefeller University, New York, NY10021, USA.

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http://dx.doi.org/10.1177/0748730407303239DOI Listing
August 2007

Applications of fluorescence microscopy to single bacterial cells.

Res Microbiol 2007 Apr 18;158(3):187-94. Epub 2007 Jan 18.

Department of Microbiology, College of Physicians and Surgeons, Columbia University, 701 West 168th Street, Room 1218, New York, NY 10032, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S092325080700013
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http://dx.doi.org/10.1016/j.resmic.2006.12.008DOI Listing
April 2007

PER-TIM interactions in living Drosophila cells: an interval timer for the circadian clock.

Science 2006 Jan;311(5758):226-9

Laboratory of Genetics, Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1126/science.1118126DOI Listing
January 2006