Ozren Bogdanovic

Ozren Bogdanovic

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Ozren Bogdanovic

Publications by authors named "Ozren Bogdanovic"

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Convergent evolution of a vertebrate-like methylome in a marine sponge.

Nat Ecol Evol 2019 Oct 26;3(10):1464-1473. Epub 2019 Sep 26.

Australian Research Council Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Perth, Western Australia, Australia.

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http://dx.doi.org/10.1038/s41559-019-0983-2DOI Listing
October 2019

Enhancer DNA methylation: implications for gene regulation.

Essays Biochem 2019 Sep 24. Epub 2019 Sep 24.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney 2010, New South Wales, Australia

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http://dx.doi.org/10.1042/EBC20190030DOI Listing
September 2019

Retention of paternal DNA methylome in the developing zebrafish germline.

Nat Commun 2019 07 11;10(1):3054. Epub 2019 Jul 11.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, NSW, 2010, Australia.

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http://dx.doi.org/10.1038/s41467-019-10895-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6624265PMC
July 2019

TET enzymes, DNA demethylation and pluripotency.

Biochem Soc Trans 2019 06 17;47(3):875-885. Epub 2019 Jun 17.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, New South Wales 2010, Australia

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http://dx.doi.org/10.1042/BST20180606DOI Listing
June 2019

DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.

Cancer Cell 2019 Feb;35(2):297-314.e8

Epigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, 384 Victoria St, Sydney, NSW 2010, Australia; St Vincent's Clinical School, UNSW, Sydney, NSW 2010, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2019.01.004DOI Listing
February 2019

Functions and mechanisms of epigenetic inheritance in animals.

Nat Rev Mol Cell Biol 2018 12;19(12):774-790

Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.

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http://www.nature.com/articles/s41580-018-0074-2
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http://dx.doi.org/10.1038/s41580-018-0074-2DOI Listing
December 2018

ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications.

Methods Mol Biol 2016 ;1480:37-53

Radboud University, Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Nijmegen, 6500HB, The Netherlands.

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http://dx.doi.org/10.1007/978-1-4939-6380-5_4DOI Listing
January 2018

DNA methylation and the preservation of cell identity.

Curr Opin Genet Dev 2017 Oct 24;46:9-14. Epub 2017 Jun 24.

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia, Australia; Harry Perkins Institute of Medical Research, Perth, Western Australia, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2017.06.007DOI Listing
October 2017

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis.

Genome Biol 2017 10 24;18(1):198. Epub 2017 Oct 24.

Radboud University, Faculty of Science, Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, 6500 HB, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1186/s13059-017-1335-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5655803PMC
October 2017

Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis.

Plant Cell 2017 Aug 13;29(8):1836-1863. Epub 2017 Jul 13.

Australian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton ACT 0200, Australia

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http://dx.doi.org/10.1105/tpc.16.00828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590493PMC
August 2017

Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition.

Science 2017 07;357(6347):212-216

Department of Chromatin Regulation, Max Planck Institute of Immunobiology and Epigenetics, D-79108 Freiburg, Germany.

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http://dx.doi.org/10.1126/science.aam5339DOI Listing
July 2017

Tet proteins: master regulators of vertebrate body plan formation?

Epigenomics 2017 02 2;9(2):93-96. Epub 2016 Dec 2.

Harry Perkins Institute of Medical Research, University of Western Australia, Perth, WA 6009, Australia; ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, WA 6009, Australia.

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http://dx.doi.org/10.2217/epi-2016-0164DOI Listing
February 2017

Genome evolution in the allotetraploid frog Xenopus laevis.

Nature 2016 10;538(7625):336-343

University of California, Berkeley, Department of Molecular and Cell Biology and Center for Integrative Genomics, Life Sciences Addition #3200, Berkeley, California 94720-3200, USA.

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http://dx.doi.org/10.1038/nature19840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313049PMC
October 2016

Embryonic transcription is controlled by maternally defined chromatin state.

Nat Commun 2015 Dec 18;6:10148. Epub 2015 Dec 18.

Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, Faculty of Science, Radboud University, PO Box 9101, 6500 HB Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/ncomms10148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4703837PMC
December 2015

Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos.

Genom Data 2015 Dec 22;6:7-9. Epub 2015 Jul 22.

ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Australia.

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http://dx.doi.org/10.1016/j.gdata.2015.07.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664660PMC
December 2015

Meis1 coordinates a network of genes implicated in eye development and microphthalmia.

Development 2015 Sep 7;142(17):3009-20. Epub 2015 Aug 7.

Centro de Biología Molecular "Severo Ochoa", CSIC-UAM, c/Nicolás Cabrera, 1, Madrid E-28049, Spain CIBER de Enfermedades Raras (CIBERER), c/Nicolás Cabrera, 1, Madrid E-28049, Spain

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http://dx.doi.org/10.1242/dev.122176DOI Listing
September 2015

Of Mice and Man: Differential DNMT Dependence in Mammalian ESCs.

Cell Stem Cell 2015 May;16(5):459-60

ARC Center of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA 6009, Australia; The Harry Perkins Institute of Medical Research, Perth, WA 6009, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2015.04.009DOI Listing
May 2015

Invertebrate epigenomics: the brave new world of the spineless.

Brief Funct Genomics 2014 May;13(3):189-90

ARC Centre of Excellence in Plant Energy Biology The University of Western Australia, Perth, WA 6009, Australia

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http://dx.doi.org/10.1093/bfgp/elu008DOI Listing
May 2014

Embryonic DNA methylation: insights from the genomics era.

Brief Funct Genomics 2014 Mar 23;13(2):121-30. Epub 2013 Sep 23.

Fax: +61 8 6488 4401,

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http://dx.doi.org/10.1093/bfgp/elt039DOI Listing
March 2014

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos.

Methods 2013 Aug 23;62(3):207-15. Epub 2013 Apr 23.

Centro Andaluz de Biología del Desarrollo-CABD, CSIC-UPO-JA, 41013 Sevilla, Spain.

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http://dx.doi.org/10.1016/j.ymeth.2013.04.011DOI Listing
August 2013

The epigenome in early vertebrate development.

Genesis 2012 Mar 27;50(3):192-206. Epub 2011 Dec 27.

Department of Molecular Biology, Faculty of Science, Nijmegen Centre of Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1002/dvg.20831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294079PMC
March 2012

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.

Genome Res 2011 Aug 2;21(8):1313-27. Epub 2011 Jun 2.

Department of Molecular Biology, Faculty of Science, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, 6500 Nijmegen, The Netherlands.

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http://dx.doi.org/10.1101/gr.114843.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3149498PMC
August 2011

Affinity-based enrichment strategies to assay methyl-CpG binding activity and DNA methylation in early Xenopus embryos.

BMC Res Notes 2011 Aug 18;4:300. Epub 2011 Aug 18.

Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, Faculty of Science, (Geert Grooteplein 28), Nijmegen, (6525 GA), The Netherlands.

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http://dx.doi.org/10.1186/1756-0500-4-300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169474PMC
August 2011

DNA methylation and methyl-CpG binding proteins: developmental requirements and function.

Chromosoma 2009 Oct 9;118(5):549-65. Epub 2009 Jun 9.

Department of Molecular Biology, Faculty of Science, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1007/s00412-009-0221-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2729420PMC
October 2009

Loss of imprinting of IGF2 and H19, loss of heterozygosity of IGF2R and CTCF, and Helicobacter pylori infection in laryngeal squamous cell carcinoma.

J Mol Med (Berl) 2008 Sep 5;86(9):1057-66. Epub 2008 Jul 5.

Laboratory of Molecular Pathology, Division of Molecular Medicine, Rudjer Boskovic Institute, Zagreb, Croatia.

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http://dx.doi.org/10.1007/s00109-008-0369-4DOI Listing
September 2008