Osamu Ogasawara

Osamu Ogasawara

UNVERIFIED PROFILE

Are you Osamu Ogasawara?   Register this Author

Register author
Osamu Ogasawara

Osamu Ogasawara

Publications by authors named "Osamu Ogasawara"

Are you Osamu Ogasawara?   Register this Author

24Publications

328Reads

34Profile Views

DDBJ Database updates and computational infrastructure enhancement.

Nucleic Acids Res 2020 Jan;48(D1):D45-D50

The Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkz982DOI Listing
January 2020

Impact of the stress ulcer prophylactic protocol on reducing the unnecessary administration of stress ulcer medications and gastrointestinal bleeding: a single-center, retrospective pre-post study.

J Intensive Care 2020 16;8:10. Epub 2020 Jan 16.

1Department of Anesthesiology and Intensive Care Medicine, Nagoya City University Graduate School of Medical Science, 1-Kawasumi, Mizuho-cho, Mizuho-ku, Nagoya, Aichi 467-8601 Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s40560-020-0427-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6966877PMC
January 2020

Visualization of Brain Activity in a Neuropathic Pain Model Using Quantitative Activity-Dependent Manganese Magnetic Resonance Imaging.

Front Neural Circuits 2019 26;13:74. Epub 2019 Nov 26.

Department of Neuropharmacology, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fncir.2019.00074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889800PMC
November 2019

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.

Gigascience 2019 04;8(4)

DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Shizuoka 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gigascience/giz052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6479428PMC
April 2019

DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data.

Nucleic Acids Res 2019 Jan;47(D1):D69-D73

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan.

View Article

Download full-text PDF

Source
https://academic.oup.com/nar/advance-article/doi/10.1093/nar
Publisher Site
http://dx.doi.org/10.1093/nar/gky1002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323915PMC
January 2019

ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data.

EMBO Rep 2018 12 9;19(12). Epub 2018 Nov 9.

Department of Developmental Biology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan

View Article

Download full-text PDF

Source
http://embor.embopress.org/lookup/doi/10.15252/embr.20184625
Publisher Site
http://dx.doi.org/10.15252/embr.201846255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6280645PMC
December 2018

MACON: a web tool for computing DNA methylation data obtained by the Illumina Infinium Human DNA methylation BeadArray.

Epigenomics 2018 03 18;10(3):249-258. Epub 2018 Jan 18.

Division of Epigenomics, National Cancer Center Research Institute, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2217/epi-2017-0093DOI Listing
March 2018

DNA Data Bank of Japan: 30th anniversary.

Nucleic Acids Res 2018 01;46(D1):D30-D35

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkx926DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753283PMC
January 2018

RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes.

Sci Data 2017 08 29;4:170105. Epub 2017 Aug 29.

Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, 1111 Yata, Mishima 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/sdata.2017.105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5574374PMC
August 2017

DNA Data Bank of Japan.

Nucleic Acids Res 2017 01 24;45(D1):D25-D31. Epub 2016 Oct 24.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkw1001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210514PMC
January 2017

DNA data bank of Japan (DDBJ) progress report.

Nucleic Acids Res 2016 Jan 17;44(D1):D51-7. Epub 2015 Nov 17.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702806PMC
January 2016

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Nucleic Acids Res 2015 Jan 3;43(Database issue):D18-22. Epub 2014 Dec 3.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gku1120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383935PMC
January 2015

DDBJ progress report: a new submission system for leading to a correct annotation.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D44-9. Epub 2013 Nov 4.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkt1066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964987PMC
January 2014

DDBJ new system and service refactoring.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D25-9. Epub 2012 Nov 24.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gks1152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531146PMC
January 2013

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Nucleic Acids Res 2012 Jan 22;40(Database issue):D38-42. Epub 2011 Nov 22.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkr994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990PMC
January 2012

DDBJ progress report.

Nucleic Acids Res 2011 Jan 9;39(Database issue):D22-7. Epub 2010 Nov 9.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkq1041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013661PMC
January 2011

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Nucleic Acids Res 2010 Jan 22;38(Database issue):D33-8. Epub 2009 Oct 22.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp847DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808917PMC
January 2010

On theoretical models of gene expression evolution with random genetic drift and natural selection.

PLoS One 2009 Nov 20;4(11):e7943. Epub 2009 Nov 20.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima, Shizuoka, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007943PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776274PMC
November 2009

BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression.

Nucleic Acids Res 2006 Jan;34(Database issue):D628-31

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkj137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347499PMC
January 2006

Indexing anatomical concepts to OMIM Clinical Synopsis using the UMLS Metathesaurus.

In Silico Biol 2004 28;4(1):31-54. Epub 2003 Dec 28.

Biological Information Research Center, National Institute of Advanced Industrial Science and Technology.

View Article

Download full-text PDF

Source
December 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

Zipf's law and human transcriptomes: an explanation with an evolutionary model.

C R Biol 2003 Oct-Nov;326(10-11):1097-101

Division of Gene Expression analysis, The Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima 411-8540, Shizuoka, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.crvi.2003.09.031DOI Listing
May 2004