Publications by authors named "Osagie G Izuogu"

13Publications

GENCODE 2021.

Authors:
Adam Frankish Mark Diekhans Irwin Jungreis Julien Lagarde Jane E Loveland Jonathan M Mudge Cristina Sisu James C Wright Joel Armstrong If Barnes Andrew Berry Alexandra Bignell Carles Boix Silvia Carbonell Sala Fiona Cunningham Tomás Di Domenico Sarah Donaldson Ian T Fiddes Carlos García Girón Jose Manuel Gonzalez Tiago Grego Matthew Hardy Thibaut Hourlier Kevin L Howe Toby Hunt Osagie G Izuogu Rory Johnson Fergal J Martin Laura Martínez Shamika Mohanan Paul Muir Fabio C P Navarro Anne Parker Baikang Pei Fernando Pozo Ferriol Calvet Riera Magali Ruffier Bianca M Schmitt Eloise Stapleton Marie-Marthe Suner Irina Sycheva Barbara Uszczynska-Ratajczak Maxim Y Wolf Jinuri Xu Yucheng T Yang Andrew Yates Daniel Zerbino Yan Zhang Jyoti S Choudhary Mark Gerstein Roderic Guigó Tim J P Hubbard Manolis Kellis Benedict Paten Michael L Tress Paul Flicek

Nucleic Acids Res 2021 01;49(D1):D916-D923

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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January 2021

Ensembl 2021.

Authors:
Kevin L Howe Premanand Achuthan James Allen Jamie Allen Jorge Alvarez-Jarreta M Ridwan Amode Irina M Armean Andrey G Azov Ruth Bennett Jyothish Bhai Konstantinos Billis Sanjay Boddu Mehrnaz Charkhchi Carla Cummins Luca Da Rin Fioretto Claire Davidson Kamalkumar Dodiya Bilal El Houdaigui Reham Fatima Astrid Gall Carlos Garcia Giron Tiago Grego Cristina Guijarro-Clarke Leanne Haggerty Anmol Hemrom Thibaut Hourlier Osagie G Izuogu Thomas Juettemann Vinay Kaikala Mike Kay Ilias Lavidas Tuan Le Diana Lemos Jose Gonzalez Martinez José Carlos Marugán Thomas Maurel Aoife C McMahon Shamika Mohanan Benjamin Moore Matthieu Muffato Denye N Oheh Dimitrios Paraschas Anne Parker Andrew Parton Irina Prosovetskaia Manoj P Sakthivel Ahamed I Abdul Salam Bianca M Schmitt Helen Schuilenburg Dan Sheppard Emily Steed Michal Szpak Marek Szuba Kieron Taylor Anja Thormann Glen Threadgold Brandon Walts Andrea Winterbottom Marc Chakiachvili Ameya Chaubal Nishadi De Silva Bethany Flint Adam Frankish Sarah E Hunt Garth R IIsley Nick Langridge Jane E Loveland Fergal J Martin Jonathan M Mudge Joanella Morales Emily Perry Magali Ruffier John Tate David Thybert Stephen J Trevanion Fiona Cunningham Andrew D Yates Daniel R Zerbino Paul Flicek

Nucleic Acids Res 2021 01;49(D1):D884-D891

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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January 2021

Cell type specific novel lncRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas.

Authors:
Luigi Grassi Osagie G Izuogu Natasha AN Jorge Denis Seyres Mariona Bustamante Frances Burden Samantha Farrow Neda Farahi Fergal J Martin Adam Frankish Jonathan M Mudge Myrto Kostadima Romina Petersen John J Lambourne Sophia Rowlston Enca Martin-Rendon Laura Clarke Kate Downes Xavier Estivill Paul Flicek Joost HA Martens Marie-Laure Yaspo Hendrik G Stunnenberg Willem H Ouwehand Fabio Passetti Ernest Turro Mattia Frontini

Haematologica 2020 07 23. Epub 2020 Jul 23.

Department of Haematology, University of Cambridge, School of Clinical Medicine;

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July 2020

Ensembl 2020.

Authors:
Andrew D Yates Premanand Achuthan Wasiu Akanni James Allen Jamie Allen Jorge Alvarez-Jarreta M Ridwan Amode Irina M Armean Andrey G Azov Ruth Bennett Jyothish Bhai Konstantinos Billis Sanjay Boddu José Carlos Marugán Carla Cummins Claire Davidson Kamalkumar Dodiya Reham Fatima Astrid Gall Carlos Garcia Giron Laurent Gil Tiago Grego Leanne Haggerty Erin Haskell Thibaut Hourlier Osagie G Izuogu Sophie H Janacek Thomas Juettemann Mike Kay Ilias Lavidas Tuan Le Diana Lemos Jose Gonzalez Martinez Thomas Maurel Mark McDowall Aoife McMahon Shamika Mohanan Benjamin Moore Michael Nuhn Denye N Oheh Anne Parker Andrew Parton Mateus Patricio Manoj Pandian Sakthivel Ahamed Imran Abdul Salam Bianca M Schmitt Helen Schuilenburg Dan Sheppard Mira Sycheva Marek Szuba Kieron Taylor Anja Thormann Glen Threadgold Alessandro Vullo Brandon Walts Andrea Winterbottom Amonida Zadissa Marc Chakiachvili Bethany Flint Adam Frankish Sarah E Hunt Garth IIsley Myrto Kostadima Nick Langridge Jane E Loveland Fergal J Martin Joannella Morales Jonathan M Mudge Matthieu Muffato Emily Perry Magali Ruffier Stephen J Trevanion Fiona Cunningham Kevin L Howe Daniel R Zerbino Paul Flicek

Nucleic Acids Res 2020 01;48(D1):D682-D688

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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January 2020

Sequencing-based microsatellite instability testing using as few as six markers for high-throughput clinical diagnostics.

Authors:
Richard Gallon Harsh Sheth Christine Hayes Lisa Redford Ghanim Alhilal Ottilia O'Brien Helena Spiewak Amanda Waltham Ciaron McAnulty Osagie G Izuogu Mark J Arends Anca Oniscu Angel M Alonso Sira M Laguna Gillian M Borthwick Mauro Santibanez-Koref Michael S Jackson John Burn

Hum Mutat 2020 01 15;41(1):332-341. Epub 2019 Sep 15.

Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom.

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January 2020

An integrated transcriptional analysis of the developing human retina.

Authors:
Carla B Mellough Roman Bauer Joseph Collin Birthe Dorgau Darin Zerti David W P Dolan Carl M Jones Osagie G Izuogu Min Yu Dean Hallam Jannetta S Steyn Kathryn White David H Steel Mauro Santibanez-Koref David J Elliott Michael S Jackson Susan Lindsay Sushma Grellscheid Majlinda Lako

Development 2019 01 29;146(2). Epub 2019 Jan 29.

Institute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, UK

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January 2019

Ensembl 2019.

Authors:
Fiona Cunningham Premanand Achuthan Wasiu Akanni James Allen M Ridwan Amode Irina M Armean Ruth Bennett Jyothish Bhai Konstantinos Billis Sanjay Boddu Carla Cummins Claire Davidson Kamalkumar Jayantilal Dodiya Astrid Gall Carlos García Girón Laurent Gil Tiago Grego Leanne Haggerty Erin Haskell Thibaut Hourlier Osagie G Izuogu Sophie H Janacek Thomas Juettemann Mike Kay Matthew R Laird Ilias Lavidas Zhicheng Liu Jane E Loveland José C Marugán Thomas Maurel Aoife C McMahon Benjamin Moore Joannella Morales Jonathan M Mudge Michael Nuhn Denye Ogeh Anne Parker Andrew Parton Mateus Patricio Ahamed Imran Abdul Salam Bianca M Schmitt Helen Schuilenburg Dan Sheppard Helen Sparrow Eloise Stapleton Marek Szuba Kieron Taylor Glen Threadgold Anja Thormann Alessandro Vullo Brandon Walts Andrea Winterbottom Amonida Zadissa Marc Chakiachvili Adam Frankish Sarah E Hunt Myrto Kostadima Nick Langridge Fergal J Martin Matthieu Muffato Emily Perry Magali Ruffier Daniel M Staines Stephen J Trevanion Bronwen L Aken Andrew D Yates Daniel R Zerbino Paul Flicek

Nucleic Acids Res 2019 01;47(D1):D745-D751

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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January 2019

GENCODE reference annotation for the human and mouse genomes.

Authors:
Adam Frankish Mark Diekhans Anne-Maud Ferreira Rory Johnson Irwin Jungreis Jane Loveland Jonathan M Mudge Cristina Sisu James Wright Joel Armstrong If Barnes Andrew Berry Alexandra Bignell Silvia Carbonell Sala Jacqueline Chrast Fiona Cunningham Tomás Di Domenico Sarah Donaldson Ian T Fiddes Carlos García Girón Jose Manuel Gonzalez Tiago Grego Matthew Hardy Thibaut Hourlier Toby Hunt Osagie G Izuogu Julien Lagarde Fergal J Martin Laura Martínez Shamika Mohanan Paul Muir Fabio C P Navarro Anne Parker Baikang Pei Fernando Pozo Magali Ruffier Bianca M Schmitt Eloise Stapleton Marie-Marthe Suner Irina Sycheva Barbara Uszczynska-Ratajczak Jinuri Xu Andrew Yates Daniel Zerbino Yan Zhang Bronwen Aken Jyoti S Choudhary Mark Gerstein Roderic Guigó Tim J P Hubbard Manolis Kellis Benedict Paten Alexandre Reymond Michael L Tress Paul Flicek

Nucleic Acids Res 2019 01;47(D1):D766-D773

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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January 2019

Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular.

Authors:
Osagie G Izuogu Abd A Alhasan Carla Mellough Joseph Collin Richard Gallon Jonathon Hyslop Francesco K Mastrorosa Ingrid Ehrmann Majlinda Lako David J Elliott Mauro Santibanez-Koref Michael S Jackson

BMC Genomics 2018 Apr 20;19(1):276. Epub 2018 Apr 20.

Institute of Genetic Medicine, Newcastle University, International Centre for Life, Central Parkway, Newcastle upon Tyne, NE1 3BZ, UK.

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April 2018

Ensembl 2018.

Authors:
Daniel R Zerbino Premanand Achuthan Wasiu Akanni M Ridwan Amode Daniel Barrell Jyothish Bhai Konstantinos Billis Carla Cummins Astrid Gall Carlos García Girón Laurent Gil Leo Gordon Leanne Haggerty Erin Haskell Thibaut Hourlier Osagie G Izuogu Sophie H Janacek Thomas Juettemann Jimmy Kiang To Matthew R Laird Ilias Lavidas Zhicheng Liu Jane E Loveland Thomas Maurel William McLaren Benjamin Moore Jonathan Mudge Daniel N Murphy Victoria Newman Michael Nuhn Denye Ogeh Chuang Kee Ong Anne Parker Mateus Patricio Harpreet Singh Riat Helen Schuilenburg Dan Sheppard Helen Sparrow Kieron Taylor Anja Thormann Alessandro Vullo Brandon Walts Amonida Zadissa Adam Frankish Sarah E Hunt Myrto Kostadima Nicholas Langridge Fergal J Martin Matthieu Muffato Emily Perry Magali Ruffier Dan M Staines Stephen J Trevanion Bronwen L Aken Fiona Cunningham Andrew Yates Paul Flicek

Nucleic Acids Res 2018 01;46(D1):D754-D761

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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January 2018

Erratum to: PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events.

Authors:
Osagie G Izuogu Abd A Alhasan Hani M Alafghani Mauro Santibanez-Koref David J Elliott Michael S Jackson

BMC Bioinformatics 2016 Feb 18;17:92. Epub 2016 Feb 18.

Institute of Genetic Medicine, Newcastle University, Newcastle Upon Tyne, UK.

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February 2016

PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events.

Authors:
Osagie G Izuogu Abd A Alhasan Hani M Alafghani Mauro Santibanez-Koref David J Elliott David J Elliot Michael S Jackson

BMC Bioinformatics 2016 Jan 13;17:31. Epub 2016 Jan 13.

Institute of Genetic Medicine, Newcastle University, Newcastle Upon Tyne, UK.

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January 2016

Circular RNA enrichment in platelets is a signature of transcriptome degradation.

Authors:
Abd A Alhasan Osagie G Izuogu Haya H Al-Balool Jannetta S Steyn Amanda Evans Maria Colzani Cedric Ghevaert Joanne C Mountford Lamin Marenah David J Elliott Mauro Santibanez-Koref Michael S Jackson

Blood 2016 Mar 10;127(9):e1-e11. Epub 2015 Dec 10.

Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, United Kingdom;

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March 2016