Publications by authors named "Ondrej Vavra"

9Publications

Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock.

Front Chem 2019 29;7:709. Epub 2019 Oct 29.

Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czechia.

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http://dx.doi.org/10.3389/fchem.2019.00709DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6828983PMC
October 2019

Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport.

Nucleic Acids Res 2019 07;47(W1):W414-W422

Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Brno, Czech Republic.

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http://dx.doi.org/10.1093/nar/gkz378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6602463PMC
July 2019

CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels.

Bioinformatics 2019 12;35(23):4986-4993

Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Masaryk University, Brno, Czech Republic.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/btz386DOI Listing
December 2019

A Haloalkane Dehalogenase from a Marine Microbial Consortium Possessing Exceptionally Broad Substrate Specificity.

Appl Environ Microbiol 2018 01 2;84(2). Epub 2018 Jan 2.

Loschmidt Laboratories, Research Centre for Toxic Compounds in the Environment (RECETOX), Faculty of Science, Masaryk University, Brno, Czech Republic

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http://dx.doi.org/10.1128/AEM.01684-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5752856PMC
January 2018

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering.

Nucleic Acids Res 2016 07 12;44(W1):W479-87. Epub 2016 May 12.

Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Masaryk University, 625 00 Brno, Czech Republic International Clinical Research Center, St. Anne's University Hospital Brno, Brno, Czech Republic

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http://dx.doi.org/10.1093/nar/gkw416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987947PMC
July 2016

Polarity-tunable spin transport in all-oxide multiferroic tunnel junctions.

Nanoscale 2016 May;8(20):10799-805

Nanoelektronik, Technische Fakultät, Christian-Albrechts-Universität zu Kiel, Kiel 24143, Germany.

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http://dx.doi.org/10.1039/c6nr01277aDOI Listing
May 2016

Giant electrode effect on tunnelling electroresistance in ferroelectric tunnel junctions.

Nat Commun 2014 Nov 17;5:5414. Epub 2014 Nov 17.

Nanoelektronik, Technische Fakultät, Christian-Albrechts-Universität zu Kiel, 24143 Kiel, Germany.

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http://dx.doi.org/10.1038/ncomms6414DOI Listing
November 2014

Bipolar switching polarity reversal by electrolyte layer sequence in electrochemical metallization cells with dual-layer solid electrolytes.

Nanoscale 2013 Dec;5(24):12598-606

Nanoelektronik, Technische Fakultät Kiel, Christian-Albrechts-Universität Kiel, Kiel, 24143, Germany.

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http://dx.doi.org/10.1039/c3nr03993eDOI Listing
December 2013