Ondrej Libiger

Ondrej Libiger

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Ondrej Libiger

Ondrej Libiger

Publications by authors named "Ondrej Libiger"

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39Publications

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Genome-wide association study of paliperidone efficacy.

Pharmacogenet Genomics 2017 01;27(1):7-18

aNeuroscience, Janssen Research & Development, LLC bJanssen Scientific Affairs, LLC, Titusville cJanssen Research & Development, LLC, Raritan dBlue Note Biosciences, LLC, Princeton, New Jersey eBiostatistics and Bioinformatics, The Scripps Translational Science Institute fDepartment of Molecular and Experimental Medicine, The Scripps Research Institute gScripps Health hHuman Biology, J. Craig Venter Institute, La Jolla iMD Revolution, San Diego, California, USA.

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http://dx.doi.org/10.1097/FPC.0000000000000250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5152628PMC
January 2017

The Pediatric Imaging, Neurocognition, and Genetics (PING) Data Repository.

Neuroimage 2016 Jan 1;124(Pt B):1149-1154. Epub 2015 May 1.

Department of Cognitive Science, University of California, San Diego, La Jolla, CA, USA; Multimodal Imaging Laboratory, University of California, San Diego, La Jolla, CA, USA; Department of Neurosciences, University of California, San Diego, La Jolla, CA, USA; Department of Radiology, University of California, San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2015.04.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4628902PMC
January 2016

Partial Least Squares Regression Can Aid in Detecting Differential Abundance of Multiple Features in Sets of Metagenomic Samples.

Front Genet 2015 17;6:350. Epub 2015 Dec 17.

Department of Human Biology, J. Craig Venter InstituteLa Jolla, CA, USA; Departments of Psychiatry and Family Medicine and Public Health, University of California, San DiegoLa Jolla, CA, USA.

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http://dx.doi.org/10.3389/fgene.2015.00350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681790PMC
January 2016

Family income, parental education and brain structure in children and adolescents.

Nat Neurosci 2015 May 30;18(5):773-8. Epub 2015 Mar 30.

1] The Saban Research Institute of Children's Hospital, Los Angeles, California, USA. [2] Department of Pediatrics of the Keck School of Medicine, University of Southern California, Los Angeles, California, USA. [3] The Pediatric Imaging, Neurocognition, and Genetics Study, San Diego, California, USA.

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http://www.columbia.edu/cu/needlab/Publications/PING%20Natur
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http://www.nature.com/doifinder/10.1038/nn.3983
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http://dx.doi.org/10.1038/nn.3983DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4414816PMC
May 2015

Admixture and clinical phenotypic variation.

Hum Hered 2014 29;77(1-4):73-86. Epub 2014 Jul 29.

The Scripps Translational Science Institute, La Jolla, Calif., USA.

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http://dx.doi.org/10.1159/000362233DOI Listing
March 2015

Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations.

BMC Bioinformatics 2015 Jan 16;16. Epub 2015 Jan 16.

Scripps Translational Science Institute, 3344 N Torrey Pines Court, La Jolla, 92037, CA, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/s12859-014-0418-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4301802PMC
January 2015

Correlation analysis of genetic admixture and social identification with body mass index in a Native American community.

Am J Hum Biol 2014 May-Jun;26(3):347-60. Epub 2014 Feb 17.

Scripps Translational Science Institute and The Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, 92037.

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http://dx.doi.org/10.1002/ajhb.22521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4068510PMC
December 2014

Association and ancestry analysis of sequence variants in ADH and ALDH using alcohol-related phenotypes in a Native American community sample.

Am J Med Genet B Neuropsychiatr Genet 2014 Dec 30;165B(8):673-83. Epub 2014 Sep 30.

Department of Human Biology, J. Craig Venter Institute, La Jolla, California; Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, California.

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http://dx.doi.org/10.1002/ajmg.b.32272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4364382PMC
December 2014

An application and empirical comparison of statistical analysis methods for associating rare variants to a complex phenotype.

Pac Symp Biocomput 2011 :76-87

The Scripps Translational Science Institute, 3344 North Torrey Pines Court, Suite 300, La Jolla, CA 92037, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5017238PMC
November 2013

Inference of human continental origin and admixture proportions using a highly discriminative ancestry informative 41-SNP panel.

Investig Genet 2013 Jul 1;4(1):13. Epub 2013 Jul 1.

Department of Psychiatry, School of Medicine, University of San Diego California, La Jolla, CA, 92093, USA.

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http://dx.doi.org/10.1186/2041-2223-4-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3699392PMC
July 2013

Patterns of population epigenomic diversity.

Nature 2013 Mar 6;495(7440):193-8. Epub 2013 Mar 6.

Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1038/nature11968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3798000PMC
March 2013

A Method for Inferring an Individual's Genetic Ancestry and Degree of Admixture Associated with Six Major Continental Populations.

Front Genet 2012 14;3:322. Epub 2013 Jan 14.

Department of Molecular and Experimental Medicine, The Scripps Research Institute and the Scripps Translational Science Institute La Jolla, CA, USA.

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http://dx.doi.org/10.3389/fgene.2012.00322DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543981PMC
January 2013

Clinical implications of human population differences in genome-wide rates of functional genotypes.

Front Genet 2012 1;3:211. Epub 2012 Nov 1.

The Scripps Translational Science La Jolla, CA, USA ; Scripps Health La Jolla, CA, USA ; Department of Molecular and Experimental Medicine, The Scripps Research Institute La Jolla, CA, USA.

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http://dx.doi.org/10.3389/fgene.2012.00211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3485509PMC
November 2012

Model-specific tests on variance heterogeneity for detection of potentially interacting genetic loci.

BMC Genet 2012 Jul 18;13:59. Epub 2012 Jul 18.

Institute of Biostatistics, Leibniz University Hannover, D-30419 Hannover, Germany.

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http://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156
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http://dx.doi.org/10.1186/1471-2156-13-59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3549778PMC
July 2012

Transgenerational epigenetic instability is a source of novel methylation variants.

Science 2011 Oct 15;334(6054):369-73. Epub 2011 Sep 15.

Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1126/science.1212959DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210014PMC
October 2011

A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.

Bioinformatics 2011 Aug 7;27(15):2047-53. Epub 2011 Jun 7.

Scripps Genomic Medicine, Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btr344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3137221PMC
August 2011

Global developmental gene expression and pathway analysis of normal brain development and mouse models of human neuronal migration defects.

PLoS Genet 2011 Mar 10;7(3):e1001331. Epub 2011 Mar 10.

Department of Pediatrics and Institute for Human Genetics, School of Medicine, University of California San Francisco, San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1001331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3053345PMC
March 2011

Statistical analysis strategies for association studies involving rare variants.

Nat Rev Genet 2010 Nov 13;11(11):773-85. Epub 2010 Oct 13.

The Scripps Translational Science Institute, 3344 North Torrey Pines Court, Suite 300, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1038/nrg2867DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743540PMC
November 2010

Comparison of genetic distance measures using human SNP genotype data.

Hum Biol 2009 Aug;81(4):389-406

Scripps Translational Science Institute, Scripps Health, and Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.3378/027.081.0401DOI Listing
August 2009

Identification of EpCAM as the gene for congenital tufting enteropathy.

Gastroenterology 2008 Aug 15;135(2):429-37. Epub 2008 May 15.

Division of Gastroenterology, Hepatology, and Nutrition, Department of Pediatrics, University of California San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1053/j.gastro.2008.05.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2574708PMC
August 2008

Accommodating linkage disequilibrium in genetic-association analyses via ridge regression.

Am J Hum Genet 2008 Feb;82(2):375-85

Department of Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.ajhg.2007.10.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427310PMC
February 2008

A simulation-based analysis of chromosome segment sharing among a group of arbitrarily related individuals.

Eur J Hum Genet 2007 Dec 15;15(12):1260-8. Epub 2007 Aug 15.

[1] 1Scripps Genomic Medicine, Scripps Health, La Jolla, CA, USA.

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http://dx.doi.org/10.1038/sj.ejhg.5201910DOI Listing
December 2007

Detecting genetic variation in microarray expression data.

Genome Res 2007 Aug 3;17(8):1228-35. Epub 2007 Jul 3.

The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1101/gr.6307307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933513PMC
August 2007

Generalized analysis of molecular variance.

PLoS Genet 2007 Apr 22;3(4):e51. Epub 2007 Feb 22.

Department of Psychiatry, University of California at San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0030051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847693PMC
April 2007

Simulation-based homozygosity mapping with the GAW14 COGA dataset on alcoholism.

BMC Genet 2005 Dec 30;6 Suppl 1:S35. Epub 2005 Dec 30.

Polymorphism Research Laboratory, Department of Psychiatry, The University of California, San Diego, La Jolla, California 92093-0603, USA.

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http://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156
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http://dx.doi.org/10.1186/1471-2156-6-S1-S35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866750PMC
December 2005