Olivier Panaud

Olivier Panaud

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Olivier Panaud

Olivier Panaud

Publications by authors named "Olivier Panaud"

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Retrotranspositional landscape of Asian rice revealed by 3000 genomes.

Nat Commun 2019 01 3;10(1):24. Epub 2019 Jan 3.

Laboratoire Génome et Développement des Plantes, UMR CNRS/UPVD 5096, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy., 66860, Perpignan Cedex, France.

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http://www.nature.com/articles/s41467-018-07974-5
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http://dx.doi.org/10.1038/s41467-018-07974-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6318337PMC
January 2019

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.

BMC Genomics 2017 07 17;18(1):537. Epub 2017 Jul 17.

Université de Perpignan Via Domitia, Laboratoire Génome et Développement des Plantes, 52, avenue Paul alduy, 66860, Perpignan cedex, France.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864
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http://dx.doi.org/10.1186/s12864-017-3753-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5513335PMC
July 2017

Horizontal transfers of transposable elements in eukaryotes: The flying genes.

Authors:
Olivier Panaud

C R Biol 2016 Jul-Aug;339(7-8):296-9. Epub 2016 May 24.

Laboratoire « Génome et Développement des plantes », UMR 5096 CNRS/UPVD, Université de Perpignan Via Domitia, 66870 Perpignan, France. Electronic address:

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http://dx.doi.org/10.1016/j.crvi.2016.04.013DOI Listing
February 2017

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants.

PLoS Genet 2017 02 17;13(2):e1006630. Epub 2017 Feb 17.

Institut de Recherche pour le Développement (IRD), UMR232 DIADE, 911 Avenue Agropolis, Montpellier, France.

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http://dx.doi.org/10.1371/journal.pgen.1006630DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5338827PMC
February 2017

A new approach for annotation of transposable elements using small RNA mapping.

Nucleic Acids Res 2015 Jul 26;43(13):e84. Epub 2015 Mar 26.

Center for Applied Genetic Technologies. University of Georgia, 111, Riverbend Dr., Athens, GA 30602, USA

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http://dx.doi.org/10.1093/nar/gkv257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4513842PMC
July 2015

Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice.

Rice (N Y) 2015 25;8:13. Epub 2015 Feb 25.

Laboratoire Génome et Développement des Plantes, UMR 5096, Université de Perpignan Via Domitia, F-66860 Perpignan, France ; CNRS, Laboratoire Génome et Développement des Plantes, UMR 5096, F-66860 Perpignan, France.

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http://dx.doi.org/10.1186/s12284-015-0045-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4385019PMC
April 2015

Widespread and frequent horizontal transfers of transposable elements in plants.

Genome Res 2014 May 11;24(5):831-8. Epub 2014 Feb 11.

Université de Perpignan Via Domitia, Laboratoire Génome et Développement des Plantes, UMR5096 CNRS/UPVD, 66860 Perpignan Cedex, France;

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http://dx.doi.org/10.1101/gr.164400.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009612PMC
May 2014

Drivers and dynamics of diversity in plant genomes.

New Phytol 2014 Apr;202(1):15-8

Université de Perpignan, UMR 5096 CNRS - IRD - UPVD, Perpignan, France.

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http://dx.doi.org/10.1111/nph.12633DOI Listing
April 2014

Use of Next Generation Sequencing (NGS) technologies for the genome-wide detection of transposition.

Methods Mol Biol 2013 ;1057:265-74

Laboratoire Génome et développement des plantes, Université de Perpignan Via Domitia, Perpignan, Cedex, France.

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http://dx.doi.org/10.1007/978-1-62703-568-2_19DOI Listing
March 2014

Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution.

Genome Biol Evol 2013 ;5(5):954-65

Université de Perpignan Via Domitia, Laboratoire Génome et développement des plantes, UMR UPVD/CNRS 5096, 66860 Perpignan, France.

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http://dx.doi.org/10.1093/gbe/evt025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3673626PMC
December 2013

Phylogenetic relationships and selective pressure on gene families related to iron homeostasis in land plants.

Genome 2012 Dec 1;55(12):883-900. Epub 2012 Nov 1.

Center for Biotechnology, Federal University of Pelotas, 96010-900 Pelotas, RS, Brazil.

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http://dx.doi.org/10.1139/gen-2012-0064DOI Listing
December 2012

International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.

Mob DNA 2012 Oct 30;3(1):17. Epub 2012 Oct 30.

CNRS Université Paris Diderot UMR7212, INSERM U944, Laboratoire Pathologie et Virologie Moléculaire, Institut Universitaire d'Hématologie, Hôpital St Louis, 1 avenue Claude Vellefaux, Paris, F-75010, France.

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http://dx.doi.org/10.1186/1759-8753-3-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3520747PMC
October 2012

Isolation and characterisation of a bacterial strain degrading the herbicide sulcotrione from an agricultural soil.

Pest Manag Sci 2012 Mar 14;68(3):340-7. Epub 2011 Sep 14.

Laboratoire de Chimie des Biomolécules et de l'Environnement, Université de Perpignan Via Domitia, Perpignan, France.

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http://dx.doi.org/10.1002/ps.2263DOI Listing
March 2012

Horizontal transfer of transposable elements in plants.

Commun Integr Biol 2008 ;1(1):74-7

Université de Perpignan Via Domitia; Laboratoire Génome et Développement des Plantes; Perpignan, France.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633806PMC
http://dx.doi.org/10.4161/cib.1.1.6328DOI Listing
July 2011

Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.

Plant J 2011 Apr 1;66(2):241-6. Epub 2011 Mar 1.

Laboratoire Génome et Développement des Plantes, UMR CNRS/IRD/UPVD, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, F-66860 Perpignan Cedex, France.

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http://dx.doi.org/10.1111/j.1365-313X.2011.04492.xDOI Listing
April 2011

Paleogenomic analysis of the short arm of chromosome 3 reveals the history of the African and Asian progenitors of cultivated rices.

Genome Biol Evol 2010 Feb 11;2:132-9. Epub 2010 Feb 11.

Laboratoire Génome et Développement des Plantes, Unite Mixte de Recherche Centre National de la Recherche Scientifique/Institut de Recherche pour le Developpement/Universite de Perpignan Via Domitia, Université de Perpignan, Perpignan, Cedex, France.

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http://dx.doi.org/10.1093/gbe/evq005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2839358PMC
February 2010

Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus.

Mol Genet Genomics 2009 Dec 25;282(6):633-52. Epub 2009 Oct 25.

CIRAD, UMR DAP, TAA96/03, 2477 Avenue Agropolis, 34398, Montpellier Cedex 5, France.

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http://dx.doi.org/10.1007/s00438-009-0493-zDOI Listing
December 2009

Identification of an active LTR retrotransposon in rice.

Plant J 2009 Jun 2;58(5):754-65. Epub 2009 Feb 2.

Laboratoire Génome et Développement des Plantes, UMR CNRS/IRD/UPVD, Université de Perpignan Via Domitia, Perpignan cedex, France.

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http://dx.doi.org/10.1111/j.1365-313X.2009.03813.xDOI Listing
June 2009

The molecular bases of cereal domestication and the history of rice.

Authors:
Olivier Panaud

C R Biol 2009 Feb-Mar;332(2-3):267-72. Epub 2008 Dec 4.

Laboratoire Génome et Développement des Plantes, Université de Perpignan Via Domitia, 52 Avenue Paul-Alduy, 66860 Perpignan Cedex, France.

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http://dx.doi.org/10.1016/j.crvi.2008.09.003DOI Listing
May 2009

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.

BMC Evol Biol 2009 Mar 16;9:58. Epub 2009 Mar 16.

Laboratoire Génome et Développement des Plantes, UMR CNRS/IRD/UPVD, Université de Perpignan, 52, avenue Paul Alduy, 66860 Perpignan, cedex, France.

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http://dx.doi.org/10.1186/1471-2148-9-58DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2664808PMC
March 2009

Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.

Plant J 2008 Mar 6;53(6):950-9. Epub 2007 Dec 6.

Laboratoire Génome et Développement des Plantes, UMR 5096 CNRS-IRD-Université de Perpignan, 52, avenue Paul Alduy, 66860 Perpignan, France.

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http://dx.doi.org/10.1111/j.1365-313X.2007.03388.xDOI Listing
March 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

A unified classification system for eukaryotic transposable elements.

Nat Rev Genet 2007 Dec;8(12):973-82

Institute of Plant Biology, University Zurich, Zollikerstrasse 107, CH-8008 Zurich, Switzerland.

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http://dx.doi.org/10.1038/nrg2165DOI Listing
December 2007

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss.

BMC Genomics 2007 Jul 6;8:218. Epub 2007 Jul 6.

Laboratoire Bioinformatique et Génomique, Institut Jacques Monod, Paris, France.

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http://dx.doi.org/10.1186/1471-2164-8-218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1940013PMC
July 2007

RetrOryza: a database of the rice LTR-retrotransposons.

Nucleic Acids Res 2007 Jan 28;35(Database issue):D66-70. Epub 2006 Oct 28.

Laboratoire Génome et Développement des Plantes, UMR 5096 CNRS-IRD-Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan, France.

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http://dx.doi.org/10.1093/nar/gkl780DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635335PMC
January 2007