Olivier Delaneau

Olivier Delaneau

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Olivier Delaneau

Olivier Delaneau

Publications by authors named "Olivier Delaneau"

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37Publications

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Expression estimation and eQTL mapping for HLA genes with a personalized pipeline.

PLoS Genet 2019 04 22;15(4):e1008091. Epub 2019 Apr 22.

Department of Genetics and Evolutionary Biology, Institute of Biosciences, University of São Paulo, São Paulo, Brazil.

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http://dx.doi.org/10.1371/journal.pgen.1008091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6497317PMC
April 2019

Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues.

Nat Genet 2017 Dec 23;49(12):1747-1751. Epub 2017 Oct 23.

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland.

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http://www.nature.com/doifinder/10.1038/ng.3979
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http://dx.doi.org/10.1038/ng.3979DOI Listing
December 2017

Estimating the causal tissues for complex traits and diseases.

Nat Genet 2017 Dec 23;49(12):1676-1683. Epub 2017 Oct 23.

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland.

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http://dx.doi.org/10.1038/ng.3981DOI Listing
December 2017

The effect of genetic variation on promoter usage and enhancer activity.

Nat Commun 2017 11 7;8(1):1358. Epub 2017 Nov 7.

Department of Genetic Medicine and Development, University of Geneva, 1 Michel Servet, Geneva, CH1211, Switzerland.

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http://dx.doi.org/10.1038/s41467-017-01467-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5677018PMC
November 2017

A complete tool set for molecular QTL discovery and analysis.

Nat Commun 2017 05 18;8:15452. Epub 2017 May 18.

Department of Genetic Medicine and Development, University of Geneva, 1 Michel Servet, Geneva CH1211, Switzerland.

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http://dx.doi.org/10.1038/ncomms15452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5454369PMC
May 2017

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Cell 2016 11;167(5):1415-1429.e19

Department of Haematology, University of Cambridge, Cambridge Biomedical Campus, Long Road, Cambridge CB2 0PT, UK; Department of Human Genetics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK; The National Institute for Health Research Blood and Transplant Unit (NIHR BTRU) in Donor Health and Genomics at the University of Cambridge, University of Cambridge, Strangeways Research Laboratory, Wort's Causeway, Cambridge CB1 8RN, UK; British Heart Foundation Centre of Excellence, Division of Cardiovascular Medicine, Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.10.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5300907PMC
November 2016

A reference panel of 64,976 haplotypes for genotype imputation.

Authors:
Shane McCarthy Sayantan Das Warren Kretzschmar Olivier Delaneau Andrew R Wood Alexander Teumer Hyun Min Kang Christian Fuchsberger Petr Danecek Kevin Sharp Yang Luo Carlo Sidore Alan Kwong Nicholas Timpson Seppo Koskinen Scott Vrieze Laura J Scott He Zhang Anubha Mahajan Jan Veldink Ulrike Peters Carlos Pato Cornelia M van Duijn Christopher E Gillies Ilaria Gandin Massimo Mezzavilla Arthur Gilly Massimiliano Cocca Michela Traglia Andrea Angius Jeffrey C Barrett Dorrett Boomsma Kari Branham Gerome Breen Chad M Brummett Fabio Busonero Harry Campbell Andrew Chan Sai Chen Emily Chew Francis S Collins Laura J Corbin George Davey Smith George Dedoussis Marcus Dorr Aliki-Eleni Farmaki Luigi Ferrucci Lukas Forer Ross M Fraser Stacey Gabriel Shawn Levy Leif Groop Tabitha Harrison Andrew Hattersley Oddgeir L Holmen Kristian Hveem Matthias Kretzler James C Lee Matt McGue Thomas Meitinger David Melzer Josine L Min Karen L Mohlke John B Vincent Matthias Nauck Deborah Nickerson Aarno Palotie Michele Pato Nicola Pirastu Melvin McInnis J Brent Richards Cinzia Sala Veikko Salomaa David Schlessinger Sebastian Schoenherr P Eline Slagboom Kerrin Small Timothy Spector Dwight Stambolian Marcus Tuke Jaakko Tuomilehto Leonard H Van den Berg Wouter Van Rheenen Uwe Volker Cisca Wijmenga Daniela Toniolo Eleftheria Zeggini Paolo Gasparini Matthew G Sampson James F Wilson Timothy Frayling Paul I W de Bakker Morris A Swertz Steven McCarroll Charles Kooperberg Annelot Dekker David Altshuler Cristen Willer William Iacono Samuli Ripatti Nicole Soranzo Klaudia Walter Anand Swaroop Francesco Cucca Carl A Anderson Richard M Myers Michael Boehnke Mark I McCarthy Richard Durbin

Nat Genet 2016 10 22;48(10):1279-83. Epub 2016 Aug 22.

Human Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.

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http://dx.doi.org/10.1038/ng.3643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388176PMC
October 2016

Phasing for medical sequencing using rare variants and large haplotype reference panels.

Bioinformatics 2016 07 27;32(13):1974-80. Epub 2016 Feb 27.

Department of Statistics, University of Oxford, Oxford, UK, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK and.

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http://dx.doi.org/10.1093/bioinformatics/btw065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920110PMC
July 2016

Haplotype estimation for biobank-scale data sets.

Nat Genet 2016 07 6;48(7):817-20. Epub 2016 Jun 6.

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1038/ng.3583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926957PMC
July 2016

Fast and efficient QTL mapper for thousands of molecular phenotypes.

Bioinformatics 2016 05 26;32(10):1479-85. Epub 2015 Dec 26.

Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, 1211, Switzerland Swiss Institute of Bioinformatics, Geneva, 1211, Switzerland and.

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http://dx.doi.org/10.1093/bioinformatics/btv722DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4866519PMC
May 2016

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.

Cell 2015 Aug 20;162(5):1039-50. Epub 2015 Aug 20.

Swiss Institute of Bioinformatics, Lausanne 1015, Switzerland; Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva 1211, Switzerland; Institute of Genetics and Genomics in Geneva, University of Geneva, Geneva 1211, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.08.001DOI Listing
August 2015

Biased allelic expression in human primary fibroblast single cells.

Am J Hum Genet 2015 Jan 31;96(1):70-80. Epub 2014 Dec 31.

Department of Genetic Medicine and Development, University of Geneva, 1211 Geneva, Switzerland; Institute of Genetics and Genomics of Geneva, 1211 Geneva, Switzerland; Service of Genetic Medicine, University Hospitals of Geneva, 1211 Geneva, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.12.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289680PMC
January 2015

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel.

Nat Commun 2014 Jun 13;5:3934. Epub 2014 Jun 13.

1] Department of Statistics, University of Oxford, Oxford OX1 3TG, UK [2] Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.

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http://dx.doi.org/10.1038/ncomms4934DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338501PMC
June 2014

Haplotype estimation using sequencing reads.

Am J Hum Genet 2013 Oct;93(4):687-96

Department of Statistics, University of Oxford, Oxford OX1 3TG, UK.

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http://dx.doi.org/10.1016/j.ajhg.2013.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791270PMC
October 2013

Haplotype inference.

Methods Mol Biol 2012 ;888:177-96

Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, Paris, France.

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http://dx.doi.org/10.1007/978-1-61779-870-2_11DOI Listing
September 2012

A linear complexity phasing method for thousands of genomes.

Nat Methods 2011 Dec 4;9(2):179-81. Epub 2011 Dec 4.

Laboratoire Génomique, Bioinformatique, et Applications (Equipe d'accueil 4627), Conservatoire National des Arts et Métiers, Paris, France.

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http://www.nature.com/articles/nmeth.1785
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http://dx.doi.org/10.1038/nmeth.1785DOI Listing
December 2011

Shape-IT: new rapid and accurate algorithm for haplotype inference.

BMC Bioinformatics 2008 Dec 16;9:540. Epub 2008 Dec 16.

Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, 292 rue Saint-Martin, 75003 Paris, France.

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http://dx.doi.org/10.1186/1471-2105-9-540DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647951PMC
December 2008

ISHAPE: new rapid and accurate software for haplotyping.

BMC Bioinformatics 2007 Jun 15;8:205. Epub 2007 Jun 15.

Chaire de Bioinformatique, Conservatoire National des Arts et Métiers, Paris, France.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-8-205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1919397PMC
June 2007

Computation of haplotypes on SNPs subsets: advantage of the "global method".

BMC Genet 2006 Oct 26;7:50. Epub 2006 Oct 26.

Equipe génomique, bioinformatique et pathologies du système immunitaire, INSERM U736, 15 rue de l'Ecole de Médecine, 75006 Paris, France.

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http://dx.doi.org/10.1186/1471-2156-7-50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636337PMC
October 2006