Oliver Ryder

Oliver Ryder

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Oliver Ryder

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Precision nomenclature for the new genomics.

Gigascience 2019 08;8(8)

Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg 194044, Russia.

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http://dx.doi.org/10.1093/gigascience/giz086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705538PMC
August 2019

Editorial.

Authors:
Oliver A Ryder

J Hered 2019 Mar;110(2):257-259

San Diego Zoo Institute for Conservation Research.

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http://dx.doi.org/10.1093/jhered/esz010DOI Listing
March 2019

A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert.

Gigascience 2019 02 1;8(2). Epub 2019 Feb 1.

The UC Davis Genome Center, Department of Evolution and Ecology, College of Biological Sciences, and the Department of Reproduction and Population Health, School of Veterinary Medicine, University of California, Davis, USA.

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http://dx.doi.org/10.1093/gigascience/giy162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6351727PMC
February 2019

Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells.

Genome Res 2018 06 24;28(6):780-788. Epub 2018 May 24.

San Diego Zoo Institute for Conservation Research, Escondido, California 92027, USA.

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http://dx.doi.org/10.1101/gr.227603.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991516PMC
June 2018

The Case of X and Y Localization of Nucleolus Organizer Regions (NORs) in (Cetartiodactyla, Mammalia).

Genes (Basel) 2018 Jun 20;9(6). Epub 2018 Jun 20.

Institute of Molecular and Cellular Biology, SB RAS, Lavrentiev ave 8/2, Novosibirsk 630090, Russia.

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http://dx.doi.org/10.3390/genes9060312DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6027365PMC
June 2018

Draft genome of the milu (Elaphurus davidianus).

Gigascience 2018 02;7(2)

Center for Ecological and Environmental Sciences, Key Laboratory for Space Bioscience and Biotechnology, Northwestern Polytechnical University, Xi'an, 710072, China.

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http://dx.doi.org/10.1093/gigascience/gix130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824821PMC
February 2018

Viable Cell Culture Banking for Biodiversity Characterization and Conservation.

Annu Rev Anim Biosci 2018 02;6:83-98

Ecological Risk Assessment and Control Section, Center for Environmental Biology and Ecosystem, National Institute for Environmental Studies, 16-2, Onogawa, Tsukuba, Ibaraki, 305-8506, Japan; email:

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http://www.annualreviews.org/doi/10.1146/annurev-animal-0301
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http://dx.doi.org/10.1146/annurev-animal-030117-014556DOI Listing
February 2018

Large numbers of vertebrates began rapid population decline in the late 19th century.

Proc Natl Acad Sci U S A 2016 12 21;113(49):14079-14084. Epub 2016 Nov 21.

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS), Kunming 650223, China;

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http://dx.doi.org/10.1073/pnas.1616804113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5150392PMC
December 2016

Generation of Induced Pluripotent Stem Cells from Mammalian Endangered Species.

Methods Mol Biol 2015 ;1330:101-9

Department of Chemical Physiology, Center for Regenerative Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1007/978-1-4939-2848-4_10DOI Listing
September 2016

Applying SNP-Derived Molecular Coancestry Estimates to Captive Breeding Programs.

J Hered 2016 Sep 10;107(5):403-12. Epub 2016 May 10.

From the Department of Life Sciences, San Diego Zoo Global, San Diego, CA 92112-0551 (Ivy and Putnam); Institute for Conservation Research, San Diego Zoo Global, Escondido, CA 92027-7017 (Navarro and Ryder); and Faculty of Veterinary Science, University of Sydney, Sydney, New South Wales, Australia (Gurr).

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http://jhered.oxfordjournals.org/content/early/2016/05/10/jh
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http://dx.doi.org/10.1093/jhered/esw029DOI Listing
September 2016

The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons).

Int J Genomics 2016 16;2016:5613862. Epub 2016 Mar 16.

Animal Breeding and Genomics Centre (ABGC), Wageningen University, 6708 PB Wageningen, Netherlands.

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http://dx.doi.org/10.1155/2016/5613862DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4812450PMC
April 2016

A Road Map for 21st Century Genetic Restoration: Gene Pool Enrichment of the Black-Footed Ferret.

J Hered 2015 Sep-Oct;106(5):581-92. Epub 2015 Aug 24.

From the Department of Wildlife Ecology and Conservation, University of Florida, 110 Newins-Ziegler Hall, Gainesville, Florida, 32611 USA (Wisely); San Diego Zoo Institute for Conservation Research, 15600 San Pasqual Valley Road, San Diego Zoo Global, Escondido, California, 92027 USA (Ryder); Davee Center for Epidemiology and Endocrinology, 2001 North Clark Street, Lincoln Park Zoo, Chicago, Illinois, 60614 USA (Santymire); Department of Anatomy and Cell Biology, 51 Newton Road, University of Iowa, Iowa City, Iowa, 52242 USA (Engelhardt); and Revive & Restore, The Long Now Foundation, 2 Marina Boulevard Building A, San Francisco, California, 94123 USA (Novak).

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http://dx.doi.org/10.1093/jhered/esv041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567841PMC
January 2016

Chromosomal variation and perinatal mortality in San Diego zoo Soemmerring's gazelles.

Zoo Biol 2015 Jul-Aug;34(4):374-84. Epub 2015 May 25.

San Diego Zoo Institute for Conservation Research, San Diego Zoo Global, 15600 San Pasqual Valley Road, Escondido, California.

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http://dx.doi.org/10.1002/zoo.21223DOI Listing
December 2015

Derivation of induced pluripotent stem cells from orangutan skin fibroblasts.

BMC Res Notes 2015 Oct 16;8:577. Epub 2015 Oct 16.

Department of Biochemistry and Molecular Biology, University of Southern California, Los Angeles, CA, USA.

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http://www.biomedcentral.com/1756-0500/8/577
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http://dx.doi.org/10.1186/s13104-015-1567-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4609060PMC
October 2015

The birds of Genome10K.

Gigascience 2014 11;3(1):32. Epub 2014 Dec 11.

San Diego Zoo Institute for Conservation Research, Escondido, CA 92027 USA.

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http://dx.doi.org/10.1186/2047-217X-3-32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326320PMC
February 2015

Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae).

J Hered 2014 May-Jun;105(3):324-33. Epub 2014 Feb 10.

San Diego Zoo Institute for Conservation Research, San Diego Zoo Global, 15600 San Pasqual Valley Road, Escondido, CA 92027.

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http://dx.doi.org/10.1093/jhered/esu004DOI Listing
January 2015

Comparative genomics reveals insights into avian genome evolution and adaptation.

Science 2014 Dec 11;346(6215):1311-20. Epub 2014 Dec 11.

China National GeneBank, Beijing Genomics Institute (BGI)-Shenzhen, Shenzhen, 518083, China. Macau University of Science and Technology, Avenida Wai long, Taipa, Macau 999078, China. Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia. Department of Medicine, University of Hong Kong, Hong Kong.

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http://jarvislab.net/wp-content/uploads/2014/12/Science-2014
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http://www.sciencemag.org/cgi/doi/10.1126/science.1251385
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http://dx.doi.org/10.1126/science.1251385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390078PMC
December 2014

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Evolutionary and functional novelty of pancreatic ribonuclease: a study of Musteloidea (order Carnivora).

Sci Rep 2014 May 27;4:5070. Epub 2014 May 27.

1] Laboratory for Conservation and Utilization of Bio-resource & Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, PR China [2] Key Laboratory for Animal Genetic Diversity and Evolution of High Education in Yunnan Province, Yunnan University, Kunming, Yunnan 650091, China.

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http://dx.doi.org/10.1038/srep05070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381406PMC
May 2014

Characterization of Prdm9 in equids and sterility in mules.

PLoS One 2013 22;8(4):e61746. Epub 2013 Apr 22.

Genetics Division, San Diego Zoo Institute for Conservation Research, San Diego Zoo Global, Escondido, California, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061746PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3632555PMC
November 2013

Great ape genetic diversity and population history.

Nature 2013 Jul 3;499(7459):471-5. Epub 2013 Jul 3.

Institut de Biologia Evolutiva, CSIC-Universitat Pompeu Fabra, PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain.

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http://dx.doi.org/10.1038/nature12228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3822165PMC
July 2013

Incorporating indels as phylogenetic characters: impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora).

Mol Phylogenet Evol 2013 Mar 10;66(3):748-56. Epub 2012 Nov 10.

Laboratory for Conservation and Utilization of Bio-Resources and Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, China.

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http://dx.doi.org/10.1016/j.ympev.2012.10.023DOI Listing
March 2013

Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells.

Lipids Health Dis 2013 Feb 4;12:10. Epub 2013 Feb 4.

Department of Biochemistry and Molecular Biology, Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA 90089, USA.

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http://lipidworld.biomedcentral.com/articles/10.1186/1476-51
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http://dx.doi.org/10.1186/1476-511X-12-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571895PMC
February 2013

Conservation genomics of threatened animal species.

Annu Rev Anim Biosci 2013 Jan 3;1:261-81. Epub 2013 Jan 3.

Institute for Conservation Research, San Diego Zoo Global, Escondido, California 92027; email: ; ;

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http://dx.doi.org/10.1146/annurev-animal-031412-103636DOI Listing
January 2013

Molecular phylogeny of extant equids and effects of ancestral polymorphism in resolving species-level phylogenies.

Mol Phylogenet Evol 2012 Nov 28;65(2):573-81. Epub 2012 Jul 28.

San Diego Zoo Institute for Conservation Research, San Diego Zoo Global, 15600 San Pasqual Valley Road Escondido, CA 92027, USA.

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http://dx.doi.org/10.1016/j.ympev.2012.07.010DOI Listing
November 2012

The fishes of Genome 10K.

Mar Genomics 2012 Sep 24;7:3-6. Epub 2012 Mar 24.

Department of Ecology and Evolutionary Biology, University of California Santa Cruz, CA, USA.

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http://dx.doi.org/10.1016/j.margen.2012.02.002DOI Listing
September 2012

Species identification and chromosome variation of captive two-toed sloths.

Zoo Biol 2011 Nov-Dec;30(6):623-35. Epub 2010 Nov 8.

San Diego Zoo Institute for Conservation Research, Escondido, California 92027, USA.

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http://dx.doi.org/10.1002/zoo.20360DOI Listing
April 2012

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers.

Mob DNA 2012 Apr 30;3. Epub 2012 Apr 30.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1186/1759-8753-3-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3357318PMC
April 2012

Comparative biology of mammalian telomeres: hypotheses on ancestral states and the roles of telomeres in longevity determination.

Aging Cell 2011 Oct 1;10(5):761-8. Epub 2011 Jun 1.

Department of Cell Biology, The University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9039, USA.

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http://dx.doi.org/10.1111/j.1474-9726.2011.00718.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387546PMC
October 2011

Human and great ape red blood cells differ in plasmalogen levels and composition.

Lipids Health Dis 2011 Jun 17;10:101. Epub 2011 Jun 17.

Hugo W. Moser Research Institute at Kennedy Krieger, and Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1186/1476-511X-10-101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129581PMC
June 2011

Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype.

Chromosome Res 2011 May 29;19(4):531-9. Epub 2011 Mar 29.

Molecular and Cellular Biology Department, Institute of Chemical Biology and Fundamental Medicine, SB RAS, 630090, Novosibirsk, Russia.

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http://dx.doi.org/10.1007/s10577-011-9201-zDOI Listing
May 2011

Phylogenetic utility of nuclear introns in interfamilial relationships of Caniformia (order Carnivora).

Syst Biol 2011 Mar 20;60(2):175-87. Epub 2011 Jan 20.

Laboratory for Conservation and Utilization of Bio-Resources and Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, China.

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http://dx.doi.org/10.1093/sysbio/syq090DOI Listing
March 2011

Genome-wide characterization of centromeric satellites from multiple mammalian genomes.

Genome Res 2011 Jan 16;21(1):137-45. Epub 2010 Nov 16.

Department of Genome Sciences, Howard Hughes Medical Institute, University of Washington School of Medicine, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.111278.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012921PMC
January 2011

Comparative and demographic analysis of orang-utan genomes.

Authors:
Devin P Locke LaDeana W Hillier Wesley C Warren Kim C Worley Lynne V Nazareth Donna M Muzny Shiaw-Pyng Yang Zhengyuan Wang Asif T Chinwalla Pat Minx Makedonka Mitreva Lisa Cook Kim D Delehaunty Catrina Fronick Heather Schmidt Lucinda A Fulton Robert S Fulton Joanne O Nelson Vincent Magrini Craig Pohl Tina A Graves Chris Markovic Andy Cree Huyen H Dinh Jennifer Hume Christie L Kovar Gerald R Fowler Gerton Lunter Stephen Meader Andreas Heger Chris P Ponting Tomas Marques-Bonet Can Alkan Lin Chen Ze Cheng Jeffrey M Kidd Evan E Eichler Simon White Stephen Searle Albert J Vilella Yuan Chen Paul Flicek Jian Ma Brian Raney Bernard Suh Richard Burhans Javier Herrero David Haussler Rui Faria Olga Fernando Fleur Darré Domènec Farré Elodie Gazave Meritxell Oliva Arcadi Navarro Roberta Roberto Oronzo Capozzi Nicoletta Archidiacono Giuliano Della Valle Stefania Purgato Mariano Rocchi Miriam K Konkel Jerilyn A Walker Brygg Ullmer Mark A Batzer Arian F A Smit Robert Hubley Claudio Casola Daniel R Schrider Matthew W Hahn Victor Quesada Xose S Puente Gonzalo R Ordoñez Carlos López-Otín Tomas Vinar Brona Brejova Aakrosh Ratan Robert S Harris Webb Miller Carolin Kosiol Heather A Lawson Vikas Taliwal André L Martins Adam Siepel Arindam Roychoudhury Xin Ma Jeremiah Degenhardt Carlos D Bustamante Ryan N Gutenkunst Thomas Mailund Julien Y Dutheil Asger Hobolth Mikkel H Schierup Oliver A Ryder Yuko Yoshinaga Pieter J de Jong George M Weinstock Jeffrey Rogers Elaine R Mardis Richard A Gibbs Richard K Wilson

Nature 2011 Jan;469(7331):529-33

The Genome Center at Washington University, Washington University School of Medicine, 4444 Forest Park Avenue, Saint Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature09687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060778PMC
January 2011

Detection of two distinct forms of apoC-I in great apes.

Comp Biochem Physiol Part D Genomics Proteomics 2010 Mar;5(1):73-9

The Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1016/j.cbd.2009.12.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830554PMC
March 2010

The sequence and de novo assembly of the giant panda genome.

Nature 2010 Jan 13;463(7279):311-7. Epub 2009 Dec 13.

BGI-Shenzhen, Shenzhen 518083, China.

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http://dx.doi.org/10.1038/nature08696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497PMC
January 2010

Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements.

Gene 2009 Dec 2;448(2):242-9. Epub 2009 Jun 2.

Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, Louisiana 70803, USA.

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http://dx.doi.org/10.1016/j.gene.2009.05.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2783879PMC
December 2009

Mass spectral analyses of the two major apolipoproteins of great ape high density lipoproteins.

Comp Biochem Physiol Part D Genomics Proteomics 2009 Dec;4(4):305-9

The Molecular Biology Institute, UCLA, Los Angeles, CA 90095, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776726PMC
December 2009

Sequencing primate genomes: what have we learned?

Annu Rev Genomics Hum Genet 2009 ;10:355-86

Department of Genome Sciences, University of Washington and the Howard Hughes Medical Institute, Seattle, Washington 98105, USA.

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http://dx.doi.org/10.1146/annurev.genom.9.081307.164420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6662594PMC
October 2009

Isolation and characterization of 23 polymorphic microsatellite loci for a West Indian iguana (Cyclura pinguis) from the British Virgin Islands.

Mol Ecol Resour 2009 Sep 18;9(5):1412-4. Epub 2009 May 18.

San Diego Zoo's Institute for Conservation Research, 15600 San Pasqual Valley Road, Escondido, CA 92027, USA Genetic Identification Services, 9552 Topanga Canyon Blvd, Chatsworth, CA 91311, USA Department of Genetics & Genomic Sciences, Mount Sinai School of Medicine, 1425 Madison Ave, Box 1498, New York, NY 10029, USA.

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http://dx.doi.org/10.1111/j.1755-0998.2009.02683.xDOI Listing
September 2009

Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals.

PLoS Genet 2009 Sep 4;5(9):e1000634. Epub 2009 Sep 4.

Department of Biology, University of California Riverside, Riverside, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2728479PMC
September 2009

Forests of the night: refugia of genetic diversity in wild tigers.

Authors:
Oliver A Ryder

PLoS Genet 2009 Aug 14;5(8):e1000603. Epub 2009 Aug 14.

San Diego Zoo's Institute for Conservation Research, Escondido, CA, USA.

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http://dx.doi.org/10.1371/journal.pgen.1000603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716535PMC
August 2009

A chromosomal inversion unique to the northern white-cheeked gibbon.

PLoS One 2009 25;4(3):e4999. Epub 2009 Mar 25.

BACPAC Resources, Children's Hospital of Oakland Research Institute, Oakland, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004999PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656618PMC
July 2009

The value of avian genomics to the conservation of wildlife.

BMC Genomics 2009 Jul 14;10 Suppl 2:S10. Epub 2009 Jul 14.

Genetics Division, San Diego Zoo's Institute for Conservation Research, Zoological Society of San Diego, Arnold and Mabel Beckman Center for Conservation Research, 15600 San Pasqual Valley Rd., Escondido, CA 92027, USA.

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http://dx.doi.org/10.1186/1471-2164-10-S2-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966331PMC
July 2009

Horse domestication and conservation genetics of Przewalski's horse inferred from sex chromosomal and autosomal sequences.

Mol Biol Evol 2009 Jan 17;26(1):199-208. Epub 2008 Oct 17.

Department of Biology, The Pennsylvania State University, University Park, USA.

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http://dx.doi.org/10.1093/molbev/msn239DOI Listing
January 2009

New insights into the evolution of intronic sequences of the beta-fibrinogen gene and their application in reconstructing mustelid phylogeny.

Zoolog Sci 2008 Jun;25(6):662-72

Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming, China.

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http://dx.doi.org/10.2108/zsj.25.662DOI Listing
June 2008

Gallus GBrowse: a unified genomic database for the chicken.

Nucleic Acids Res 2008 Jan 11;36(Database issue):D719-23. Epub 2007 Oct 11.

Department of Animal and Food Sciences, University of Delaware, Newark, DE 19706, USA.

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http://dx.doi.org/10.1093/nar/gkm783DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238981PMC
January 2008

Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation.

BMC Evol Biol 2007 Oct 24;7:198. Epub 2007 Oct 24.

Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming 650091, China.

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http://dx.doi.org/10.1186/1471-2148-7-198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151078PMC
October 2007

Construction of a California condor BAC library and first-generation chicken-condor comparative physical map as an endangered species conservation genomics resource.

Genomics 2006 Dec 1;88(6):711-718. Epub 2006 Aug 1.

Genetics Division, Conservation and Research for Endangered Species, Zoological Society of San Diego, Arnold and Mabel Beckman Center for Conservation Research, 15600 San Pasqual Valley Road, Escondido, CA 92027, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2006.06.005DOI Listing
December 2006

Sonic Hedgehog, a key development gene, experienced intensified molecular evolution in primates.

Hum Mol Genet 2006 Jul 10;15(13):2031-7. Epub 2006 May 10.

Department of Human Genetics, Howard Hughes Medical Institute, USA.

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http://dx.doi.org/10.1093/hmg/ddl123DOI Listing
July 2006

A mobile element based phylogeny of Old World monkeys.

Mol Phylogenet Evol 2005 Dec 3;37(3):872-80. Epub 2005 Jun 3.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ympev.2005.04.015DOI Listing
December 2005

Alu insertion loci and platyrrhine primate phylogeny.

Mol Phylogenet Evol 2005 Apr 18;35(1):117-26. Epub 2005 Jan 18.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale systems, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ympev.2004.10.023DOI Listing
April 2005

Evolution of the tandem repeats in thymidylate synthase enhancer region (TSER) in primates.

Gene 2004 Aug;338(1):47-54

Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, PR China.

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http://dx.doi.org/10.1016/j.gene.2004.05.018DOI Listing
August 2004

Nucleotide diversity in gorillas.

Genetics 2004 Mar;166(3):1375-83

Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1470796PMC
March 2004

Intra- and interspecific variation of the CCR5 gene in higher primates.

Mol Biol Evol 2003 Oct 29;20(10):1722-9. Epub 2003 Aug 29.

Center for Reproduction of Endangered Species, Zoological Society of San Diego, San Diego, California, USA.

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http://dx.doi.org/10.1093/molbev/msg198DOI Listing
October 2003

Low nucleotide diversity in chimpanzees and bonobos.

Genetics 2003 Aug;164(4):1511-8

Department of Ecology and Evolution, University of Chicago, 1101 E. 57th Street, Chicago, IL 60637, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462640PMC
August 2003

Cloning advances and challenges for conservation.

Authors:
Oliver A Ryder

Trends Biotechnol 2002 Jun;20(6):231-2; discussion 233

Center for Reproduction of Endangered Species, Zoological Society of San Diego, San Diego, CA 92112-0551, USA.

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June 2002