Oliver J Rando

Oliver J Rando

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Oliver J Rando

Oliver J Rando

Publications by authors named "Oliver J Rando"

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Transitions in paternal social status predict patterns of offspring growth and metabolic transcription.

Mol Ecol 2020 Feb 19;29(3):624-638. Epub 2020 Jan 19.

School of Biological Sciences, University of Utah, Salt Lake City, UT, USA.

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http://dx.doi.org/10.1111/mec.15346DOI Listing
February 2020

Control of noncoding RNA production and histone levels by a 5' tRNA fragment.

Genes Dev 2020 01 12;34(1-2):118-131. Epub 2019 Dec 12.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.

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http://dx.doi.org/10.1101/gad.332783.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6938667PMC
January 2020

Early life lessons: The lasting effects of germline epigenetic information on organismal development.

Mol Metab 2019 Dec 27. Epub 2019 Dec 27.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molmet.2019.12.004DOI Listing
December 2019

MicroRNAs Absent in Caput Sperm Are Required for Normal Embryonic Development.

Dev Cell 2019 07;50(1):7-8

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2019.06.007DOI Listing
July 2019

Profiling of Pluripotency Factors in Single Cells and Early Embryos.

Cell 2019 05 4;177(5):1319-1329.e11. Epub 2019 Apr 4.

Department of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.03.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6525046PMC
May 2019

Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence.

Mol Cell 2019 02 27;73(3):533-546.e4. Epub 2018 Dec 27.

Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.11.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6368455PMC
February 2019

Transgenerational Epigenetic Inheritance.

Annu Rev Genet 2018 11 30;52:21-41. Epub 2018 Aug 30.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA; email:

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http://dx.doi.org/10.1146/annurev-genet-120417-031404DOI Listing
November 2018

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.

Dev Cell 2018 08 26;46(4):481-494.e6. Epub 2018 Jul 26.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15345807183054
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http://dx.doi.org/10.1016/j.devcel.2018.06.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6103849PMC
August 2018

Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice.

Dev Cell 2018 08 26;46(4):470-480.e3. Epub 2018 Jul 26.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15345807183054
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http://dx.doi.org/10.1016/j.devcel.2018.06.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6103825PMC
August 2018

Effects of Larval Density on Gene Regulation in During Routine L1 Synchronization.

G3 (Bethesda) 2018 05 4;8(5):1787-1793. Epub 2018 May 4.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605

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http://g3journal.org/lookup/doi/10.1534/g3.118.200056
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http://dx.doi.org/10.1534/g3.118.200056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940168PMC
May 2018

Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation.

Mol Cell 2017 Dec 30;68(5):978-992.e4. Epub 2017 Nov 30.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765173083
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http://dx.doi.org/10.1016/j.molcel.2017.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728682PMC
December 2017

Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs.

Cell Rep 2017 12;21(13):3691-3699

Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.12.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747310PMC
December 2017

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo.

Nat Genet 2017 Oct 28;49(10):1502-1510. Epub 2017 Aug 28.

Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München, München, Germany.

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http://dx.doi.org/10.1038/ng.3945DOI Listing
October 2017

Metabolic Inputs into the Epigenome.

Cell Metab 2017 03;25(3):544-558

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15504131173009
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http://dx.doi.org/10.1016/j.cmet.2017.02.003DOI Listing
March 2017

Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring.

Elife 2017 02 14;6. Epub 2017 Feb 14.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, United States.

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http://dx.doi.org/10.7554/eLife.24771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5340528PMC
February 2017

Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.

Nat Methods 2016 Dec 10;13(12):1009-1011. Epub 2016 Oct 10.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.4025DOI Listing
December 2016

DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells.

Elife 2016 11 16;5. Epub 2016 Nov 16.

Department of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, United States.

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https://elifesciences.org/articles/21964
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http://dx.doi.org/10.7554/eLife.21964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111885PMC
November 2016

Dynamics of Nucleosome Positioning Maturation following Genomic Replication.

Cell Rep 2016 09 25;16(10):2651-2665. Epub 2016 Aug 25.

Institut de Génétique Moléculaire de Montpellier, UMR 5535 CNRS, 1919 Route de Mende, 34293 Montpellier Cedex 5, France; Université de Montpellier, 163 rue Auguste Broussonnet, 34090 Montpellier, France. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.07.083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014762PMC
September 2016

Regulation of X-linked gene expression during early mouse development by .

Elife 2016 09 19;5. Epub 2016 Sep 19.

Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, United States.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059138PMC
http://dx.doi.org/10.7554/eLife.19127DOI Listing
September 2016

Intergenerational Transfer of Epigenetic Information in Sperm.

Authors:
Oliver J Rando

Cold Spring Harb Perspect Med 2016 05 2;6(5). Epub 2016 May 2.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605.

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http://dx.doi.org/10.1101/cshperspect.a022988DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4852801PMC
May 2016

R loops regulate promoter-proximal chromatin architecture and cellular differentiation.

Nat Struct Mol Biol 2015 Dec 9;22(12):999-1007. Epub 2015 Nov 9.

Department of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.

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http://dx.doi.org/10.1038/nsmb.3122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4677832PMC
December 2015

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.

Dev Cell 2015 Dec;35(6):750-8

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2015.11.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691283PMC
December 2015

Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis.

Cell Rep 2015 Nov 12;13(8):1610-22. Epub 2015 Nov 12.

Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.10.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662874PMC
November 2015

Epigenomics and the structure of the living genome.

Genome Res 2015 Oct;25(10):1482-90

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.

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http://dx.doi.org/10.1101/gr.190165.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4579333PMC
October 2015

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.

Cell 2015 Jul 25;162(1):108-19. Epub 2015 Jun 25.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674150063
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http://dx.doi.org/10.1016/j.cell.2015.05.048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509605PMC
July 2015

Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo.

G3 (Bethesda) 2015 Jul 14;5(9):1889-97. Epub 2015 Jul 14.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605

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http://dx.doi.org/10.1534/g3.115.020271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4555225PMC
July 2015

High-resolution chromatin dynamics during a yeast stress response.

Mol Cell 2015 Apr 19;58(2):371-86. Epub 2015 Mar 19.

School of Computer Science and Engineering, The Hebrew University, Jerusalem 9190401, Israel; Institute of Life Sciences, The Hebrew University, Jerusalem 9190401, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2015.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405355PMC
April 2015

Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal.

Nat Commun 2015 Apr 21;6:6770. Epub 2015 Apr 21.

Brudnick Neuropsychiatric Research Institute, Department of Psychiatry, University of Massachusetts Medical School, Worcester, Massachusetts 01604, USA.

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http://dx.doi.org/10.1038/ncomms7770DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405813PMC
April 2015

I'm eating for two: parental dietary effects on offspring metabolism.

Cell 2015 Mar;161(1):93-105

Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.02.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4465102PMC
March 2015

Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.

Genes Dev 2015 Feb;29(4):362-78

Department of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA;

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http://dx.doi.org/10.1101/gad.253534.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4335293PMC
February 2015

Mechanisms underlying nucleosome positioning in vivo.

Annu Rev Biophys 2014 ;43:41-63

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605; email:

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http://www.annualreviews.org/doi/10.1146/annurev-biophys-051
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http://dx.doi.org/10.1146/annurev-biophys-051013-023114DOI Listing
August 2014

A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters.

PLoS Genet 2014 Aug 7;10(8):e1004515. Epub 2014 Aug 7.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4125097PMC
August 2014

High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.

Dev Cell 2014 Jul 3;30(1):11-22. Epub 2014 Jul 3.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2014.05.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184102PMC
July 2014

Father-son chats: inheriting stress through sperm RNA.

Cell Metab 2014 Jun;19(6):894-5

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2014.05.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131544PMC
June 2014

Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns.

Cell Rep 2014 Mar 6;6(6):961-972. Epub 2014 Mar 6.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, MA 02115, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247140011
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http://dx.doi.org/10.1016/j.celrep.2014.02.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3999964PMC
March 2014

Toward a unified physical model of nucleosome patterns flanking transcription start sites.

Proc Natl Acad Sci U S A 2013 Apr 18;110(14):5719-24. Epub 2013 Mar 18.

Department of Physics, Harvard University, Cambridge, MA 02138, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1214048110
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http://dx.doi.org/10.1073/pnas.1214048110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619296PMC
April 2013

A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme.

Science 2013 Apr;340(6129):195-9

Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1126/science.1229758DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3727404PMC
April 2013

Painting by numbers: increasing the parts list for chromatin domains.

Mol Cell 2013 Feb;49(4):620-1

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.molcel.2013.02.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012609PMC
February 2013

A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast.

PLoS Genet 2012 12;8(7):e1002811. Epub 2012 Jul 12.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002811DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395613PMC
January 2013

Daddy issues: paternal effects on phenotype.

Authors:
Oliver J Rando

Cell 2012 Nov;151(4):702-708

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2012.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564497PMC
November 2012

A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.

Mol Cell 2012 Oct 9;48(1):5-15. Epub 2012 Aug 9.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School,Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.molcel.2012.07.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472102PMC
October 2012

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Genome Res 2012 Sep;22(9):1798-812

Program in Bioinformatics and Integrative Biology, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.

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http://dx.doi.org/10.1101/gr.139105.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431495PMC
September 2012

Rewriting the epigenome.

Cell 2012 Jun;149(7):1422-3

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.cell.2012.06.008DOI Listing
June 2012

NURDs are required for diversity.

EMBO J 2012 May 11;31(14):3036-7. Epub 2012 May 11.

Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA, USA.

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http://dx.doi.org/10.1038/emboj.2012.137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400008PMC
May 2012

Combinatorial complexity in chromatin structure and function: revisiting the histone code.

Authors:
Oliver J Rando

Curr Opin Genet Dev 2012 Apr 20;22(2):148-55. Epub 2012 Mar 20.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.gde.2012.02.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3345062PMC
April 2012

Chromatin and transcription in yeast.

Genetics 2012 Feb;190(2):351-87

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.

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http://dx.doi.org/10.1534/genetics.111.132266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3276623PMC
February 2012

Genome-wide measurement of histone H3 replacement dynamics in yeast.

Authors:
Oliver J Rando

Methods Mol Biol 2011 ;759:41-60

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA.

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http://dx.doi.org/10.1007/978-1-61779-173-4_3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974389PMC
December 2011

Sub1 and RPA associate with RNA polymerase II at different stages of transcription.

Mol Cell 2011 Nov;44(3):397-409

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.molcel.2011.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227220PMC
November 2011

Patterns and mechanisms of ancestral histone protein inheritance in budding yeast.

PLoS Biol 2011 Jun 7;9(6):e1001075. Epub 2011 Jun 7.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.

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http://dx.plos.org/10.1371/journal.pbio.1001075
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http://dx.doi.org/10.1371/journal.pbio.1001075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3110181PMC
June 2011

Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC?

J Biol 2009 23;8(11):96. Epub 2009 Dec 23.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 364 Plantation Street No, 903, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1186/jbiol207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2804288PMC
March 2011

Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization.

EMBO J 2011 Mar 18;30(6):1012-26. Epub 2011 Feb 18.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA.

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http://emboj.embopress.org/cgi/doi/10.1038/emboj.2011.30
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http://dx.doi.org/10.1038/emboj.2011.30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3061035PMC
March 2011

Control of chromatin structure by spt6: different consequences in coding and regulatory regions.

Mol Cell Biol 2011 Feb 22;31(3):531-41. Epub 2010 Nov 22.

Department of Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.

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http://dx.doi.org/10.1128/MCB.01068-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3028613PMC
February 2011

Overlapping regulation of CenH3 localization and histone H3 turnover by CAF-1 and HIR proteins in Saccharomyces cerevisiae.

Genetics 2011 Jan 13;187(1):9-19. Epub 2010 Oct 13.

Department of Molecular and Cell Biology, University of California, Berkeley, California 947202, USA.

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http://dx.doi.org/10.1534/genetics.110.123117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018296PMC
January 2011

Genome-wide mapping of nucleosomes in yeast.

Authors:
Oliver J Rando

Methods Enzymol 2010 1;470:105-18. Epub 2010 Mar 1.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00766879107000
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http://dx.doi.org/10.1016/S0076-6879(10)70005-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4445963PMC
January 2011

Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.

Cell 2011 Jan;144(2):200-13

Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01655, USA.

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http://dx.doi.org/10.1016/j.cell.2010.12.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035940PMC
January 2011

RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast.

Genome Biol 2010 16;11(7):R75. Epub 2010 Jul 16.

Department of Biological Chemistry and Molecular Pharmacology, Harvard University, 240 Longwood Avenue, Boston, MA 02115, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2010-11-7-r75DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2926786PMC
December 2010

Chromatin as a potential carrier of heritable information.

Curr Opin Cell Biol 2010 Jun 17;22(3):284-90. Epub 2010 Mar 17.

Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.ceb.2010.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022377PMC
June 2010

Nucleosome positioning: how is it established, and why does it matter?

Dev Biol 2010 Mar 13;339(2):258-66. Epub 2009 Jun 13.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.ydbio.2009.06.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830277PMC
March 2010

Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast.

PLoS Genet 2010 Feb 5;6(2):e1000837. Epub 2010 Feb 5.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.

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http://dx.plos.org/10.1371/journal.pgen.1000837
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816684PMC
http://dx.doi.org/10.1371/journal.pgen.1000837DOI Listing
February 2010

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging.

Genome Res 2010 Jan 21;20(1):90-100. Epub 2009 Oct 21.

School of Computer Science and Engineering, The Hebrew University, Jerusalem, Israel.

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http://dx.doi.org/10.1101/gr.098509.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798834PMC
January 2010

Tracking lineages of single cells in lines using a microfluidic device.

Proc Natl Acad Sci U S A 2009 Oct 13;106(43):18149-54. Epub 2009 Oct 13.

Department of Physics/School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1073/pnas.0903163106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2761238PMC
October 2009

Genome-wide views of chromatin structure.

Annu Rev Biochem 2009 ;78:245-71

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1146/annurev.biochem.78.071107.134639DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2811691PMC
July 2009

Reduced-representation methylation mapping.

Genome Biol 2008 1;9(8):231. Epub 2008 Sep 1.

Roche NimbleGen Inc, Research and Development, 500 S. Rosa Rd, Madison, WI 53719, USA.

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http://dx.doi.org/10.1186/gb-2008-9-8-231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2575507PMC
December 2008

Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast.

PLoS Genet 2008 Nov 21;4(11):e1000270. Epub 2008 Nov 21.

School of Computer Science and Engineering, The Hebrew University, Jerusalem, Israel.

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http://dx.doi.org/10.1371/journal.pgen.1000270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581598PMC
November 2008

Evolution in a test tube: the hatchet before the scalpel.

Authors:
Oliver J Rando

Cell 2008 Nov;135(5):789-91

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.cell.2008.11.005DOI Listing
November 2008

Altered dosage and mislocalization of histone H3 and Cse4p lead to chromosome loss in Saccharomyces cerevisiae.

Genetics 2008 May 5;179(1):263-75. Epub 2008 May 5.

Genetics Branch Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20889, USA.

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http://dx.doi.org/10.1534/genetics.108.088518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2390605PMC
May 2008

Chromatin remodelling at promoters suppresses antisense transcription.

Nature 2007 Dec;450(7172):1031-5

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1038/nature06391DOI Listing
December 2007

Rules and regulation in the primary structure of chromatin.

Curr Opin Cell Biol 2007 Jun 26;19(3):250-6. Epub 2007 Apr 26.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.ceb.2007.04.006DOI Listing
June 2007

Global patterns of histone modifications.

Authors:
Oliver J Rando

Curr Opin Genet Dev 2007 Apr 20;17(2):94-9. Epub 2007 Feb 20.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.gde.2007.02.006DOI Listing
April 2007

Dynamics of replication-independent histone turnover in budding yeast.

Science 2007 Mar;315(5817):1405-8

Faculty of Arts and Sciences, Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1126/science.1134053DOI Listing
March 2007

Chromatin structure in the genomics era.

Authors:
Oliver J Rando

Trends Genet 2007 Feb 22;23(2):67-73. Epub 2006 Dec 22.

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1016/j.tig.2006.12.002DOI Listing
February 2007

Timescales of genetic and epigenetic inheritance.

Cell 2007 Feb;128(4):655-68

Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00928674070012
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http://dx.doi.org/10.1016/j.cell.2007.01.023DOI Listing
February 2007

Distinct pathways for snoRNA and mRNA termination.

Mol Cell 2006 Dec;24(5):723-734

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2006.11.011DOI Listing
December 2006

Noisy silencing of chromatin.

Dev Cell 2006 Aug;11(2):134-6

Bauer Center for Genomics Research, Harvard University, 7 Divinity Avenue, Cambridge, Massachusetts 02138.

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http://dx.doi.org/10.1016/j.devcel.2006.07.012DOI Listing
August 2006

Single-nucleosome mapping of histone modifications in S. cerevisiae.

PLoS Biol 2005 Oct 30;3(10):e328. Epub 2005 Aug 30.

Bauer Center for Genomics Research, Harvard University, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1371/journal.pbio.0030328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1195719PMC
October 2005

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin.

Cell 2005 Oct;123(2):233-48

Department of Biochemistry and Biophysics, University of California, 600 16th Street, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1016/j.cell.2005.10.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2039754PMC
October 2005

Genome-scale identification of nucleosome positions in S. cerevisiae.

Science 2005 Jul 16;309(5734):626-30. Epub 2005 Jun 16.

Bauer Center for Genomics Research, Harvard University, 7 Divinity Avenue, Cambridge, MA 02138, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1112178
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http://dx.doi.org/10.1126/science.1112178DOI Listing
July 2005

Developmentally induced changes in transcriptional program alter spatial organization across chromosomes.

Genes Dev 2005 May;19(10):1188-98

Department of Systems Biology, Harvard Medical School and The Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1101/gad.1307205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1132005PMC
May 2005

Genomic characterization reveals a simple histone H4 acetylation code.

Proc Natl Acad Sci U S A 2005 Apr 28;102(15):5501-6. Epub 2005 Mar 28.

Bauer Center for Genomics Research, Harvard University, 7 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1073/pnas.0500136102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC555684PMC
April 2005

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

Nature 2004 Nov;432(7016):517-22

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nature03041DOI Listing
November 2004

Second messenger control of chromatin remodeling.

Nat Struct Biol 2003 Feb;10(2):81-3

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http://dx.doi.org/10.1038/nsb0203-81DOI Listing
February 2003

Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation.

Proc Natl Acad Sci U S A 2002 Sep 23;99(18):11796-801. Epub 2002 Aug 23.

Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.092284399DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC129348PMC
September 2002

Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex.

Proc Natl Acad Sci U S A 2002 Mar;99(5):2824-9

Department of Developmental Biology, Howard Hughes Medical Institute, Stanford University Medical School, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.032662899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC122432PMC
March 2002