Publications by authors named "Oleg Simakov"

43Publications

Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss.

Gigascience 2020 Nov;9(11)

Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, 1 James Cook Dr, Douglas QLD 4811 , Australia.

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November 2020

New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis.

Commun Biol 2019 11;2:465. Epub 2019 Dec 11.

1Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495 Japan.

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July 2020

Cephalopod Biology: At the Intersection Between Genomic and Organismal Novelties.

Annu Rev Anim Biosci 2020 02 9;8:71-90. Epub 2019 Dec 9.

Department of Molecular Evolutionary and Development, University of Vienna, 1090 Vienna, Austria; email:

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February 2020

Ancient animal genome architecture reflects cell type identities.

Nat Ecol Evol 2019 09 5;3(9):1289-1293. Epub 2019 Aug 5.

Department of Molecular Evolution and Development, University of Vienna, Vienna, Austria.

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September 2019

The survey and reference assisted assembly of the Octopus vulgaris genome.

Sci Data 2019 04 1;6(1):13. Epub 2019 Apr 1.

Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn Napoli, Napoli, Italy.

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April 2019

Identification and Expression of Protocadherin Gene Family in .

Front Physiol 2018 14;9:1905. Epub 2019 Jan 14.

Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy.

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January 2019

RepeatCraft: a meta-pipeline for repetitive element de-fragmentation and annotation.

Bioinformatics 2019 03;35(6):1051-1052

Department of Molecular Evolution and Development, Faculty of Life Science, University of Vienna, A-1090 Vienna, Austria.

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March 2019

The Diversification of Early Emerging Metazoans: A Window into the Evolution of Animal Multicellularity.

Bioessays 2018 05 25;40(5):e1800029. Epub 2018 Mar 25.

Department of Molecular Evolution and Development, University of Vienna, Vienna, 1090, Austria.

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May 2018

Independent evolution of genomic characters during major metazoan transitions.

Dev Biol 2017 07 25;427(2):179-192. Epub 2016 Nov 25.

National Institute of Genetics, Mishima, Japan.

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July 2017

The genome of Aiptasia, a sea anemone model for coral symbiosis.

Proc Natl Acad Sci U S A 2015 Sep 31;112(38):11893-8. Epub 2015 Aug 31.

Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia;

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September 2015

The octopus genome and the evolution of cephalopod neural and morphological novelties.

Nature 2015 Aug;524(7564):220-4

1] Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 9040495, Japan [2] Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA [3] Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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August 2015

Effects of low seawater pH on the marine polychaete Platynereis dumerilii.

Mar Pollut Bull 2015 Jun 22;95(1):166-72. Epub 2015 Apr 22.

School of Biological, Biomedical and Environmental Sciences, University of Hull, Cottingham Road, Hull HU6 7RX, United Kingdom. Electronic address:

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June 2015

Development of the annelid axochord: insights into notochord evolution.

Science 2014 09;345(6202):1365-8

Developmental Biology Unit, European Molecular Biology Laboratory (EMBL), D-69117 Heidelberg. Centre for Organismal Studies, University of Heidelberg, Heidelberg, Germany.

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September 2014

Evolutionary active transposable elements in the genome of the coelacanth.

J Exp Zool B Mol Dev Evol 2014 Sep 1;322(6):322-33. Epub 2013 Aug 1.

Institut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, CNRS UMR 5242, Université Lyon 1, Lyon, France.

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September 2014

The African coelacanth genome provides insights into tetrapod evolution.

Nature 2013 Apr;496(7445):311-6

Molecular Genetics Program, Benaroya Research Institute, Seattle, Washington 98101, USA.

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April 2013

Linking micro- and macro-evolution at the cell type level: a view from the lophotrochozoan Platynereis dumerilii.

Brief Funct Genomics 2013 Sep 20;12(5):430-9. Epub 2012 Nov 20.

Meyerhofstr. 1, 69117 Heidelberg, Germany.

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September 2013

Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response.

Dev Biol 2010 Nov 10;347(1):24-39. Epub 2010 Aug 10.

Department of Neurobiology and Anatomy, Howard Hughes Medical Institute, University of Utah School of Medicine, 401 MREB, 20N 1900E, Salt Lake City, UT 84132, USA.

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November 2010

Ancient animal microRNAs and the evolution of tissue identity.

Nature 2010 Feb 31;463(7284):1084-8. Epub 2010 Jan 31.

Developmental Biology Unit, European Molecular Biology Laboratory, D-69117 Heidelberg, Germany.

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February 2010

Multiple Wnts are involved in Hydra organizer formation and regeneration.

Dev Biol 2009 Jun 13;330(1):186-99. Epub 2009 Feb 13.

Department of Molecular Evolution and Genomics, Heidelberg University, Im Neuenheimer Feld 230, Heidelberg, Germany.

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June 2009