Ole N Jensen

Ole N Jensen

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High-Resolution Differential Ion Mobility Separations/Orbitrap Mass Spectrometry without Buffer Gas Limitations.

Anal Chem 2019 May 9;91(10):6918-6925. Epub 2019 May 9.

Department of Chemistry , Wichita State University , 1845 Fairmount , Wichita , Kansas 67260 , United States.

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http://dx.doi.org/10.1021/acs.analchem.9b01309DOI Listing
May 2019

Phosphoproteomics in Microbiology: Protocols for Studying Streptomyces coelicolor Differentiation.

Methods Mol Biol 2018 ;1841:249-260

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1007/978-1-4939-8695-8_17DOI Listing
April 2019

FlashPack: Fast and Simple Preparation of Ultrahigh-performance Capillary Columns for LC-MS.

Mol Cell Proteomics 2019 02 29;18(2):383-390. Epub 2018 Oct 29.

From the Department of Biochemistry & Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark

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http://www.mcponline.org/lookup/doi/10.1074/mcp.TIR118.00095
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http://dx.doi.org/10.1074/mcp.TIR118.000953DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6356079PMC
February 2019

Differential Ion Mobility Separations/Mass Spectrometry with High Resolution in Both Dimensions.

Anal Chem 2019 Jan 27;91(2):1479-1485. Epub 2018 Dec 27.

Department of Chemistry , Wichita State University , 1845 Fairmount , Wichita , Kansas 67260 , United States.

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http://dx.doi.org/10.1021/acs.analchem.8b04518DOI Listing
January 2019

Distinct Roles of Two Histone Methyltransferases in Transmitting H3K36me3-Based Epigenetic Memory Across Generations in .

Genetics 2018 11 14;210(3):969-982. Epub 2018 Sep 14.

Department of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, California 95064

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http://dx.doi.org/10.1534/genetics.118.301353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6218224PMC
November 2018

Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multimodal Gas-Phase Protein Fragmentation.

Anal Chem 2018 11 10;90(21):12519-12526. Epub 2018 Oct 10.

Department of Biochemistry and Molecular Biology and VILLUM Center for Bioanalytical Sciences , University of Southern Denmark , DK-5230 Odense M , Denmark.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b02344
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http://dx.doi.org/10.1021/acs.analchem.8b02344DOI Listing
November 2018

VSClust: feature-based variance-sensitive clustering of omics data.

Bioinformatics 2018 09;34(17):2965-2972

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/bty224DOI Listing
September 2018

Quantitative Proteome and Phosphoproteome Analyses of Reveal Proteins and Phosphoproteins Modulating Differentiation and Secondary Metabolism.

Mol Cell Proteomics 2018 08 21;17(8):1591-1611. Epub 2018 May 21.

From the ‡Área de Microbiología, Departamento de Biología Funcional e IUOPA, Facultad de Medicina, Universidad de Oviedo, 33006 Oviedo, Spain;

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http://dx.doi.org/10.1074/mcp.RA117.000515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072539PMC
August 2018

The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation.

Cancer Res 2018 08 29;78(15):4114-4125. Epub 2018 May 29.

Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1158/0008-5472.CAN-18-0342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076439PMC
August 2018

Accurate H3K27 methylation can be established de novo by SUZ12-directed PRC2.

Nat Struct Mol Biol 2018 03 26;25(3):225-232. Epub 2018 Feb 26.

Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41594-018-0036-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5842896PMC
March 2018

Linear and Differential Ion Mobility Separations of Middle-Down Proteoforms.

Anal Chem 2018 02 6;90(4):2918-2925. Epub 2018 Feb 6.

Department of Chemistry, Wichita State University , 1845 Fairmount, Wichita, Kansas 67260, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b05224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6366606PMC
February 2018

Phosphotyrosine Biased Enrichment of Tryptic Peptides from Cancer Cells by Combining pY-MIP and TiO Affinity Resins.

Anal Chem 2017 11 25;89(21):11332-11340. Epub 2017 Oct 25.

Department of Biochemistry and Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark , DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/acs.analchem.7b02091DOI Listing
November 2017

Molecularly Imprinted Porous Monolithic Materials from Melamine-Formaldehyde for Selective Trapping of Phosphopeptides.

Anal Chem 2017 09 24;89(17):9491-9501. Epub 2017 Aug 24.

Umeå University , Department of Chemistry, S-901 87 Umeå, Sweden.

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http://dx.doi.org/10.1021/acs.analchem.7b02470DOI Listing
September 2017

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.

Nucleic Acids Res 2017 Sep;45(16):9272-9289

Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1093/nar/gkx696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766163PMC
September 2017

Characterization of Complete Histone Tail Proteoforms Using Differential Ion Mobility Spectrometry.

Anal Chem 2017 05 26;89(10):5461-5466. Epub 2017 Apr 26.

Department of Chemistry, Wichita State University , 1845 Fairmount, Wichita, Kansas 67260, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b00379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5436587PMC
May 2017

Nuclear phosphoproteome analysis of 3T3-L1 preadipocyte differentiation reveals system-wide phosphorylation of transcriptional regulators.

Proteomics 2017 03 14;17(6). Epub 2016 Dec 14.

Department of Biochemistry and Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1002/pmic.201600248DOI Listing
March 2017

A biotin enrichment strategy identifies novel carbonylated amino acids in proteins from human plasma.

J Proteomics 2017 03 4;156:40-51. Epub 2017 Jan 4.

Department of Biochemistry and Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK-5230 Odense, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2016.12.019DOI Listing
March 2017

Abnormal levels of histone methylation in the retinas of diabetic rats are reversed by minocycline treatment.

Sci Rep 2017 03 24;7:45103. Epub 2017 Mar 24.

Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University, Wuhan, 430072, P.R. China.

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http://dx.doi.org/10.1038/srep45103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5364468PMC
March 2017

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation.

Mol Cell Proteomics 2016 08 14;15(8):2715-29. Epub 2016 Jun 14.

From the ‡Centre for Epigenetics and VILLUM Center for Bioanalytical Sciences, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark;

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http://dx.doi.org/10.1074/mcp.M115.054460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974346PMC
August 2016

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications.

Proteomics 2016 Mar 1;16(6):907-14. Epub 2016 Mar 1.

Protein Research Group, VILLUM Center for Bioanalytical Sciences and Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1002/pmic.201400545DOI Listing
March 2016

Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics.

Proteomics 2016 Feb 15;16(3):459-64. Epub 2016 Jan 15.

Centre for Epigenetics, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1002/pmic.201500285DOI Listing
February 2016

Top-down and Middle-down Protein Analysis Reveals that Intact and Clipped Human Histones Differ in Post-translational Modification Patterns.

Mol Cell Proteomics 2015 Dec 30;14(12):3142-53. Epub 2015 Sep 30.

From the ‡Department of Biochemistry and Molecular Biology and §Center for Epigenetics, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK - 5230 Odense M, Denmark

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http://dx.doi.org/10.1074/mcp.M115.048975DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4762630PMC
December 2015

NADH-Cytochrome b5 Reductase 3 Promotes Colonization and Metastasis Formation and Is a Prognostic Marker of Disease-Free and Overall Survival in Estrogen Receptor-Negative Breast Cancer.

Mol Cell Proteomics 2015 Nov 8;14(11):2988-99. Epub 2015 Sep 8.

From the ‡Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, J. B. Winsløws Vej 25.3, DK-5000 Odense C, Denmark.; **Department of Oncology, Odense University Hospital, Søndre Boulevard 29, DK-5000 Odense C, Denmark.

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http://dx.doi.org/10.1074/mcp.M115.050385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4638041PMC
November 2015

H3K23me2 is a new heterochromatic mark in Caenorhabditis elegans.

Nucleic Acids Res 2015 Nov 17;43(20):9694-710. Epub 2015 Oct 17.

Biotech Research & Innovation Centre (BRIC), University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen N, Denmark Centre for Epigenetics, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen N, Denmark

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http://dx.doi.org/10.1093/nar/gkv1063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4787770PMC
November 2015

The human oral metaproteome reveals potential biomarkers for caries disease.

Proteomics 2015 Oct 22;15(20):3497-507. Epub 2015 Sep 22.

FISABIO Foundation, Center for Advanced Research in Public Health, Valencia, Spain.

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http://dx.doi.org/10.1002/pmic.201400600DOI Listing
October 2015

Detection and differentiation of 22 kDa and 20 kDa Growth Hormone proteoforms in human plasma by LC-MS/MS.

Biochim Biophys Acta 2015 Apr 30;1854(4):284-90. Epub 2014 Dec 30.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, Odense M DK-5230, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2014.12.022DOI Listing
April 2015

Two distinct modes for propagation of histone PTMs across the cell cycle.

Genes Dev 2015 Mar;29(6):585-90

Biotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; Centre for Epigenetics, University of Copenhagen, 2200 Copenhagen, Denmark;

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http://dx.doi.org/10.1101/gad.256354.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378191PMC
March 2015

Quantitative analysis of proteome and lipidome dynamics reveals functional regulation of global lipid metabolism.

Chem Biol 2015 Mar;22(3):412-25

Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, 5230 Odense, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2015.02.007DOI Listing
March 2015

Targeted mass spectrometry analysis of the proteins IGF1, IGF2, IBP2, IBP3 and A2GL by blood protein precipitation.

J Proteomics 2015 Jan 30;113:29-37. Epub 2014 Sep 30.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2014.09.013DOI Listing
January 2015

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress.

Mol Cell Proteomics 2014 Dec 15;13(12):3294-307. Epub 2014 Aug 15.

From the ‡Proteolysis in Diseases, IPATIMUP, Institute of Molecular Pathology and Immunology of the University of Porto, Rua Dr. Roberto Frias s/n, 4200-465 Porto, Portugal; §Human Genetics Department, National Institute of Health Dr Ricardo Jorge, Av. Padre Cruz, 1649-016 Lisboa, Portugal;

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http://dx.doi.org/10.1074/mcp.M113.034363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256484PMC
December 2014

Integrated solid-phase extraction-capillary liquid chromatography (speLC) interfaced to ESI-MS/MS for fast characterization and quantification of protein and proteomes.

J Proteome Res 2014 Dec 20;13(12):6169-75. Epub 2014 Nov 20.

Department of Biochemistry and Molecular Biology, University of Southern Denmark , Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/pr5008575DOI Listing
December 2014

FBXO22 protein is required for optimal synthesis of the N-methyl-D-aspartate (NMDA) receptor coagonist D-serine.

J Biol Chem 2014 Dec 21;289(49):33904-15. Epub 2014 Oct 21.

From the Department of Biochemistry, Rappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Haifa 31096, Israel,

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http://dx.doi.org/10.1074/jbc.M114.618405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256329PMC
December 2014

Shotgun lipidomic analysis of chemically sulfated sterols compromises analytical sensitivity: Recommendation for large-scale global lipidome analysis.

Eur J Lipid Sci Technol 2014 Dec 29;116(12):1618-1620. Epub 2014 Oct 29.

Department of Biochemistry and Molecular Biology, University of Southern Denmark Odense, Denmark.

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http://dx.doi.org/10.1002/ejlt.201400451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4449110PMC
December 2014

Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones.

Proteomics 2014 Oct 28;14(19):2200-11. Epub 2014 Aug 28.

Department of Biochemistry and Molecular Biology, Centre for Epigenetics, University of Southern Denmark, Odense M, Denmark.

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http://doi.wiley.com/10.1002/pmic.201400084
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http://dx.doi.org/10.1002/pmic.201400084DOI Listing
October 2014

Proteomics in chromatin biology and epigenetics.

Proteomics 2014 Oct;14(19):2105-8

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http://dx.doi.org/10.1002/pmic.201470143DOI Listing
October 2014

Large scale analysis of co-existing post-translational modifications in histone tails reveals global fine structure of cross-talk.

Mol Cell Proteomics 2014 Jul 16;13(7):1855-65. Epub 2014 Apr 16.

From the Department of Biochemistry and Molecular Biology University of Southern Denmark Campusvej 55 DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1074/mcp.O113.036335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4083120PMC
July 2014

Transcription factor cooperativity in early adipogenic hotspots and super-enhancers.

Cell Rep 2014 Jun 22;7(5):1443-1455. Epub 2014 May 22.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.04.042DOI Listing
June 2014

Molecular architecture of transcription factor hotspots in early adipogenesis.

Cell Rep 2014 Jun 22;7(5):1434-1442. Epub 2014 May 22.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.04.043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6360525PMC
June 2014

Comparative proteomic analysis of histone post-translational modifications upon ischemia/reperfusion-induced retinal injury.

J Proteome Res 2014 Apr 26;13(4):2175-86. Epub 2014 Mar 26.

College of Life Sciences, Wuhan University , Wuhan 430072, P. R. China.

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http://dx.doi.org/10.1021/pr500040aDOI Listing
April 2014

KYSS: mass spectrometry data quality assessment for protein analysis and large-scale proteomics.

Biochem Biophys Res Commun 2014 Mar 27;445(4):702-7. Epub 2014 Jan 27.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1016/j.bbrc.2014.01.066DOI Listing
March 2014

Acute phencyclidine treatment induces extensive and distinct protein phosphorylation in rat frontal cortex.

J Proteome Res 2014 Mar 24;13(3):1578-92. Epub 2014 Feb 24.

Department of Biochemistry and Molecular Biology, University of Southern Denmark , Campusvej 55, DK-5230 Odense M, Denmark.

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http://pubs.acs.org/doi/10.1021/pr4010794
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http://dx.doi.org/10.1021/pr4010794DOI Listing
March 2014

Tousled-like kinases phosphorylate Asf1 to promote histone supply during DNA replication.

Nat Commun 2014 Mar 6;5:3394. Epub 2014 Mar 6.

Biotech Research and Innovation Centre (BRIC) and Centre for Epigenetics, University of Copenhagen, Ole Maaløes Vej 5, Copenhagen DK-2200, Denmark.

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http://www.nature.com/articles/ncomms4394
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http://dx.doi.org/10.1038/ncomms4394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977046PMC
March 2014

The potato tuber mitochondrial proteome.

Plant Physiol 2014 Feb 18;164(2):637-53. Epub 2013 Dec 18.

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

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http://www.plantphysiol.org/content/early/2013/12/18/pp.113.
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http://www.plantphysiol.org/cgi/doi/10.1104/pp.113.229054
Publisher Site
http://dx.doi.org/10.1104/pp.113.229054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912095PMC
February 2014

Depletion of abundant plasma proteins by poly(N-isopropylacrylamide-acrylic acid) hydrogel particles.

Anal Chem 2014 Feb 15;86(3):1543-50. Epub 2014 Jan 15.

Department of Biochemistry and Molecular Biology, University of Southern Denmark , Odense M, DK-5230, Denmark.

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http://dx.doi.org/10.1021/ac403749jDOI Listing
February 2014

A proteomics approach to the identification of biomarkers for psoriasis utilising keratome biopsy.

J Proteomics 2013 Dec 20;94:176-85. Epub 2013 Sep 20.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, Odense DK-5230, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2013.09.010DOI Listing
December 2013

Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis.

Mol Cell Proteomics 2013 Oct 21;12(10):2992-3005. Epub 2013 Jun 21.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1074/mcp.M112.025585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3790306PMC
October 2013

Candida albicans induces pro-inflammatory and anti-apoptotic signals in macrophages as revealed by quantitative proteomics and phosphoproteomics.

J Proteomics 2013 Oct 5;91:106-35. Epub 2013 Jul 5.

Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain; Instituto Ramón y Cajal de Investigaciones Sanitarias (IRYCIS), Madrid, Spain.

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http://dx.doi.org/10.1016/j.jprot.2013.06.026DOI Listing
October 2013

Precision mapping of coexisting modifications in histone H3 tails from embryonic stem cells by ETD-MS/MS.

Anal Chem 2013 Sep 16;85(17):8232-9. Epub 2013 Aug 16.

Centre for Epigenetics, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/ac401299wDOI Listing
September 2013

Proteomics identifies molecular networks affected by tetradecylthioacetic acid and fish oil supplemented diets.

J Proteomics 2013 Jun 6;84:61-77. Epub 2013 Apr 6.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1016/j.jprot.2013.03.027DOI Listing
June 2013

Functional proteomics of barley and barley chloroplasts - strategies, methods and perspectives.

Front Plant Sci 2013 18;4:52. Epub 2013 Mar 18.

Department of Biochemistry and Molecular Biology, University of Southern Denmark Odense, Denmark.

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http://dx.doi.org/10.3389/fpls.2013.00052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3600771PMC
March 2013

Identification of markers associated with highly aggressive metastatic phenotypes using quantitative comparative proteomics.

Cancer Genomics Proteomics 2012 Sep-Oct;9(5):265-73

Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, Odense, Denmark.

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February 2013

Vesicular signalling and immune modulation as hedonic fingerprints: proteomic profiling in the chronic mild stress depression model.

J Psychopharmacol 2012 Dec 8;26(12):1569-83. Epub 2012 Nov 8.

Centre for Psychiatric Research, Institute of Clinical Medicine, Aarhus University Hospital, Risskov, Denmark.

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http://dx.doi.org/10.1177/0269881112460110DOI Listing
December 2012

Automated and high confidence protein phosphorylation site localization using complementary collision-activated dissociation and electron transfer dissociation tandem mass spectrometry.

Anal Chem 2012 Nov 30;84(22):9694-9. Epub 2012 Oct 30.

Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/ac302364rDOI Listing
November 2012

Functional heterogeneity within the CD44 high human breast cancer stem cell-like compartment reveals a gene signature predictive of distant metastasis.

Mol Med 2012 Sep 25;18:1109-21. Epub 2012 Sep 25.

Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.2119/molmed.2012.00091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3474436PMC
September 2012

Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry.

J Proteomics 2012 Jun 3;75(12):3419-33. Epub 2012 Jan 3.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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https://linkinghub.elsevier.com/retrieve/pii/S18743919110071
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http://dx.doi.org/10.1016/j.jprot.2011.12.029DOI Listing
June 2012

Reproducibility of mass spectrometry based protein profiles for diagnosis of ovarian cancer across clinical studies: A systematic review.

J Proteomics 2012 Jun 17;75(10):2758-72. Epub 2012 Feb 17.

Institute of Regional Health Services Research, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1016/j.jprot.2012.02.007DOI Listing
June 2012

Spatially resolved protein hydrogen exchange measured by subzero-cooled chip-based nanoelectrospray ionization tandem mass spectrometry.

Anal Chem 2012 May 26;84(10):4467-73. Epub 2012 Apr 26.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1021/ac300268rDOI Listing
May 2012

Phosphosite mapping of P-type plasma membrane H+-ATPase in homologous and heterologous environments.

J Biol Chem 2012 Feb 15;287(7):4904-13. Epub 2011 Dec 15.

Centre for Membrane Pumps in Cells and Disease-PUMPkin, Department of Plant Biology and Biotechnology, University of Copenhagen, DK-1871 Frederiksberg C, Denmark.

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http://www.jbc.org/content/287/7/4904.full.pdf
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http://www.jbc.org/cgi/doi/10.1074/jbc.M111.307264
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http://dx.doi.org/10.1074/jbc.M111.307264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3281613PMC
February 2012

The influence of the fungal pathogen Mycocentrospora acerina on the proteome and polyacetylenes and 6-methoxymellein in organic and conventionally cultivated carrots (Daucus carota) during post harvest storage.

J Proteomics 2012 Jan 29;75(3):962-77. Epub 2011 Oct 29.

Department of Plant Biology and Biotechnology, Faculty of Life Science, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark.

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http://dx.doi.org/10.1016/j.jprot.2011.10.014DOI Listing
January 2012

Human inter-α-inhibitor is a substrate for factor XIIIa and tissue transglutaminase.

Biochim Biophys Acta 2011 Dec 14;1814(12):1624-30. Epub 2011 Sep 14.

Department of Molecular Biology, University of Aarhus, Aarhus, Denmark.

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http://dx.doi.org/10.1016/j.bbapap.2011.08.017DOI Listing
December 2011

Quantitative profiling of PE, MMPE, DMPE, and PC lipid species by multiple precursor ion scanning: a tool for monitoring PE metabolism.

Biochim Biophys Acta 2011 Dec 5;1811(12):1081-9. Epub 2011 Oct 5.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://dx.doi.org/10.1016/j.bbalip.2011.09.018DOI Listing
December 2011

Analytical strategies in mass spectrometry-based phosphoproteomics.

Methods Mol Biol 2011 ;753:183-213

Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G4 0RE, Scotland, UK.

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http://link.springer.com/10.1007/978-1-61779-148-2_13
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September 2011

Characterization of human myotubes from type 2 diabetic and nondiabetic subjects using complementary quantitative mass spectrometric methods.

Mol Cell Proteomics 2011 Sep 22;10(9):M110.006650. Epub 2011 Jun 22.

Department of Endocrinology, Odense University Hospital, 5000 Odense, Denmark.

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http://dx.doi.org/10.1074/mcp.M110.006650DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3186194PMC
September 2011

The pseudokinase domain of JAK2 is a dual-specificity protein kinase that negatively regulates cytokine signaling.

Nat Struct Mol Biol 2011 Aug 14;18(9):971-6. Epub 2011 Aug 14.

Institute of Biomedical Technology, University of Tampere, and Tampere University Hospital, Tampere, Finland.

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http://dx.doi.org/10.1038/nsmb.2099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504201PMC
August 2011

WAVE regulatory complex activation by cooperating GTPases Arf and Rac1.

Proc Natl Acad Sci U S A 2011 Aug 15;108(35):14449-54. Epub 2011 Aug 15.

Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge, CB21QP, United Kingdom.

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http://dx.doi.org/10.1073/pnas.1107666108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3167530PMC
August 2011

Time-resolved quantitative proteome analysis of in vivo intestinal development.

Mol Cell Proteomics 2011 Mar 29;10(3):M110.005231. Epub 2010 Dec 29.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.

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http://dx.doi.org/10.1074/mcp.M110.005231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3047163PMC
March 2011

Loss of ammonia during electron-transfer dissociation of deuterated peptides as an inherent gauge of gas-phase hydrogen scrambling.

Anal Chem 2010 Dec 29;82(23):9755-62. Epub 2010 Oct 29.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/ac101889bDOI Listing
December 2010

Proteomics and the dynamic plasma membrane: Quo Vadis?

Proteomics 2010 Nov 2;10(22):3997-4011. Epub 2010 Nov 2.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1002/pmic.201000312DOI Listing
November 2010

Modification-specific proteomics in plant biology.

J Proteomics 2010 Oct 10;73(11):2249-66. Epub 2010 Jun 10.

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1016/j.jprot.2010.06.002DOI Listing
October 2010

Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures.

J Proteome Res 2010 Sep;9(9):4801-11

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, Odense M, DK-5230, Odense, Denmark.

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http://dx.doi.org/10.1021/pr100513pDOI Listing
September 2010

Quantitative proteomics analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hypha differentiation.

Mol Cell Proteomics 2010 Jul 11;9(7):1423-36. Epub 2010 Mar 11.

double daggerProtein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1074/mcp.M900449-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2938082PMC
July 2010

Phosphorylation of mouse serine racemase regulates D-serine synthesis.

FEBS Lett 2010 Jul 21;584(13):2937-41. Epub 2010 May 21.

Department of Biochemistry, B. Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa, Israel.

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http://doi.wiley.com/10.1016/j.febslet.2010.05.022
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July 2010

Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36.

Mol Cell Proteomics 2010 May 11;9(5):838-50. Epub 2010 Feb 11.

Centre for Epigenetics, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1074/mcp.M900489-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2871418PMC
May 2010

Characterization of sialylated and fucosylated glycopeptides of beta2-glycoprotein I by a combination of HILIC LC and MALDI MS/MS.

J Sep Sci 2010 Mar;33(6-7):891-902

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1002/jssc.200900802DOI Listing
March 2010

Glycopeptide profiling of beta-2-glycoprotein I by mass spectrometry reveals attenuated sialylation in patients with antiphospholipid syndrome.

J Proteomics 2009 Nov 23;73(1):123-33. Epub 2009 Aug 23.

Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1016/j.jprot.2009.08.007DOI Listing
November 2009

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques.

Proteomics 2009 Oct;9(20):4632-41

The Ben May Department for Cancer Research, The University of Chicago, Chicago, IL, USA.

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http://doi.wiley.com/10.1002/pmic.200900398
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http://dx.doi.org/10.1002/pmic.200900398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2892724PMC
October 2009

Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum.

J Proteome Res 2009 Jul;8(7):3439-50

Department of Biochemistry and Molecular Biology, Protein Research Group, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/pr9000898DOI Listing
July 2009

Selective extraction of phospholipids from dairy products by micro-solid phase extraction based on titanium dioxide microcolumns followed by MALDI-TOF-MS analysis.

Anal Bioanal Chem 2009 Jul 8;394(5):1453-61. Epub 2009 May 8.

Centro Interdipartimentale di Spettrometria di Massa Analitica per Ricerche Tecnologiche (SMART), Bari, Italy.

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http://dx.doi.org/10.1007/s00216-009-2812-yDOI Listing
July 2009

Protein hydrogen exchange measured at single-residue resolution by electron transfer dissociation mass spectrometry.

Anal Chem 2009 Jul;81(14):5577-84

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

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http://dx.doi.org/10.1021/ac9008447DOI Listing
July 2009

Metastasis-related plasma membrane proteins of human breast cancer cells identified by comparative quantitative mass spectrometry.

Mol Cell Proteomics 2009 Jun 24;8(6):1436-49. Epub 2009 Mar 24.

Medical Biotechnology Center, Institute of Medical Biology, University of Southern Denmark, Winsloewparken 25.3, 5000 Odense C, Denmark.

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http://dx.doi.org/10.1074/mcp.M800061-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690497PMC
June 2009

Efficient isolation and quantitative proteomic analysis of cancer cell plasma membrane proteins for identification of metastasis-associated cell surface markers.

J Proteome Res 2009 Jun;8(6):3078-90

Medical Biotechnology Center, Institute of Medical Biology, University of Southern Denmark, Winsloewparken 25. 3, DK-5000 Odense C, Denmark.

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http://pubs.acs.org/doi/abs/10.1021/pr801091k
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June 2009

Enrichment and characterization of phosphopeptides by immobilized metal affinity chromatography (IMAC) and mass spectrometry.

Methods Mol Biol 2009 ;527:47-56, xi

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://link.springer.com/10.1007/978-1-60327-834-8_4
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May 2009

Enrichment and separation of mono- and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis.

Methods Mol Biol 2009 ;527:67-78, xi

Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.

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http://link.springer.com/10.1007/978-1-60327-834-8_6
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May 2009

Feedback inactivation of D-serine synthesis by NMDA receptor-elicited translocation of serine racemase to the membrane.

Proc Natl Acad Sci U S A 2009 May 20;106(18):7589-94. Epub 2009 Apr 20.

Department of Biochemistry, Bruce Rappaport Faculty of Medicine, Technion-Israel Institute of Technology, Haifa 31096, Israel.

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http://dx.doi.org/10.1073/pnas.0809442106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2678608PMC
May 2009

Serum protein profiling by solid phase extraction and mass spectrometry: a future diagnostics tool?

Proteomics 2009 Mar;9(6):1428-41

Protein Research Group, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark.

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http://dx.doi.org/10.1002/pmic.200800382DOI Listing
March 2009

Analytical strategies for phosphoproteomics.

Proteomics 2009 Mar;9(6):1451-68

KMEB, Department of Endocrinology, Odense University Hospital, Odense M, Denmark.

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http://dx.doi.org/10.1002/pmic.200800454DOI Listing
March 2009