Olaf Ronneberger

Olaf Ronneberger

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Olaf Ronneberger

Olaf Ronneberger

Publications by authors named "Olaf Ronneberger"

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38Publications

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A 3D digital atlas of the Nicotiana tabacum root tip and its use to investigate changes in the root apical meristem induced by the Agrobacterium 6b oncogene.

Plant J 2017 Oct 11;92(1):31-42. Epub 2017 Aug 11.

Department of Molecular Mechanisms of Phenotypic Plasticity, Institut de Biologie Moléculaire des Plantes, Rue du Général Zimmer 12, 67084, Strasbourg, France.

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http://dx.doi.org/10.1111/tpj.13631DOI Listing
October 2017

Spontaneous and electric field-controlled front-rear polarization of human keratinocytes.

Mol Biol Cell 2015 Dec 30;26(24):4373-86. Epub 2015 Sep 30.

Center for Systems Biology, University of Freiburg, 79104 Freiburg, Germany Renal Division, University Hospital Freiburg, 79106 Freiburg, Germany BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg, Germany Imagine Institute, Paris Descartes University-Sorbonne Paris Cité, 75015 Paris, France

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http://dx.doi.org/10.1091/mbc.E14-12-1580DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4666133PMC
December 2015

The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells.

J Cell Biol 2015 Dec;211(5):963-73

Renal Division, Department of Medicine, University of Freiburg Medical Center, 79106 Freiburg, Germany Centre for Biological Signaling Studies, 79104 Freiburg, Germany

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http://dx.doi.org/10.1083/jcb.201502043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4674276PMC
December 2015

Amotl2a interacts with the Hippo effector Yap1 and the Wnt/β-catenin effector Lef1 to control tissue size in zebrafish.

Elife 2015 Sep 3;4:e08201. Epub 2015 Sep 3.

Developmental Biology, Institute for Biology I, Faculty of Biology, Albert Ludwigs University of Freiburg, Freiburg im Breisgau, Germany.

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http://dx.doi.org/10.7554/eLife.08201DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596637PMC
September 2015

B cell antigen receptors of the IgM and IgD classes are clustered in different protein islands that are altered during B cell activation.

Sci Signal 2015 Sep 15;8(394):ra93. Epub 2015 Sep 15.

BIOSS Centre for Biological Signalling Studies, University of Freiburg, D-79104 Freiburg, Germany. Department of Molecular Immunology, Institute of Biology III at the Faculty of Biology of the University of Freiburg, D-79104, and at the Max Planck Institute of Immunobiology and Epigenetics, D-79108 Freiburg, Germany.

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http://dx.doi.org/10.1126/scisignal.2005887DOI Listing
September 2015

Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing.

Neuroimage 2014 Sep 29;98:405-15. Epub 2014 Apr 29.

Freiburg Brain Imaging Center, University Medical Center, University of Freiburg, Freiburg, Germany; Department of Psychiatry and Psychotherapy, University Medical Center Freiburg, Freiburg, Germany; Department of Neurology, University Medical Center Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1016/j.neuroimage.2014.04.057DOI Listing
September 2014

Validation of fluorescence molecular tomography/micro-CT multimodal imaging in vivo in rats.

Mol Imaging Biol 2014 Jun;16(3):350-61

Institute for Macromolecular Chemistry, University of Freiburg, 79104, Freiburg, Germany.

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http://dx.doi.org/10.1007/s11307-013-0698-8DOI Listing
June 2014

The iRoCS Toolbox--3D analysis of the plant root apical meristem at cellular resolution.

Plant J 2014 Mar 12;77(5):806-14. Epub 2014 Feb 12.

Institute for Computer Science, Albert Ludwigs University Freiburg, Georges Köhler Allee, Gebäude 52, D-79110, Freiburg, Germany.

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http://dx.doi.org/10.1111/tpj.12429DOI Listing
March 2014

Variational attenuation correction in two-view confocal microscopy.

BMC Bioinformatics 2013 Dec 18;14:366. Epub 2013 Dec 18.

Department of Computer Science, Albert-Ludwigs-Universität, Georges-Köhler-Allee Geb, 52, 79110 Freiburg, Germany.

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http://dx.doi.org/10.1186/1471-2105-14-366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3878336PMC
December 2013

Non-directional radial intercalation dominates deep cell behavior during zebrafish epiboly.

Biol Open 2013 Aug 3;2(8):845-54. Epub 2013 Jun 3.

Department of Computer Science, Albert-Ludwigs-University Freiburg , Georges-Koehler-Allee Geb 052, 79110 Freiburg , Germany ; BIOSS - Centre for Biological Signalling Studies, Albert-Ludwigs-University Freiburg , Schänzlestrasse 18, 79104 Freiburg , Germany.

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http://dx.doi.org/10.1242/bio.20134614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3744077PMC
August 2013

Functional and structural MRI biomarkers to detect pre-clinical neurodegeneration.

Curr Alzheimer Res 2013 Feb;10(2):125-34

Department of Psychiatry and Psychotherapy, Section of Gerontopsychiatry and Neuropsychology, Freiburg Brain Imaging, University Medical Center Freiburg, Freiburg, Germany.

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February 2013

Semi-automatic determination of cell surface areas used in systems biology.

Front Biosci (Elite Ed) 2013 Jan 1;5:533-45. Epub 2013 Jan 1.

BIOSS Centre for Biological Signaling Studies, University of Freiburg, Germany.

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January 2013

Shroom3 is required downstream of FGF signalling to mediate proneuromast assembly in zebrafish.

Development 2012 Dec 7;139(24):4571-81. Epub 2012 Nov 7.

Centre for Biological Signalling Studies, University of Freiburg, Schänzlestrasse 18, D-79104 Freiburg, Germany.

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http://dx.doi.org/10.1242/dev.083253DOI Listing
December 2012

Vertebrate kidney tubules elongate using a planar cell polarity-dependent, rosette-based mechanism of convergent extension.

Nat Genet 2012 Dec 11;44(12):1382-7. Epub 2012 Nov 11.

Department of Medicine, Renal Division, University of Freiburg Medical Center, Freiburg, Germany.

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http://dx.doi.org/10.1038/ng.2452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4167614PMC
December 2012

Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators.

IEEE Trans Pattern Anal Mach Intell 2012 Aug;34(8):1563-75

Department of Radiology, Medical Physics, University Medical Center Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1109/TPAMI.2011.263DOI Listing
August 2012

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.

Nat Methods 2012 Jun 17;9(7):735-42. Epub 2012 Jun 17.

Computer Science Department, Albert-Ludwigs-University Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1038/nmeth.2076DOI Listing
June 2012

Multiview deblurring for 3-D images from light-sheet-based fluorescence microscopy.

IEEE Trans Image Process 2012 Apr 23;21(4):1863-73. Epub 2011 Dec 23.

Chair of Pattern Recognition and Image Processing, Department of Computer Science, University of Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1109/TIP.2011.2181528DOI Listing
April 2012

A comparison of different automated methods for the detection of white matter lesions in MRI data.

Neuroimage 2011 Jul 3;57(2):416-22. Epub 2011 May 3.

Department of Psychiatry and Psychotherapy, Section for Gerontopsychiatry, University Medical Center Freiburg, Germany.

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http://dx.doi.org/10.1016/j.neuroimage.2011.04.053DOI Listing
July 2011

Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems.

Nat Commun 2011 Jan;2:171

Developmental Biology, Institute Biology I, Faculty of Biology, Albert-Ludwigs-University Freiburg, Hauptstrasse 1, Freiburg D-79104, Germany.

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http://dx.doi.org/10.1038/ncomms1171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3105308PMC
January 2011

Early functional magnetic resonance imaging activations predict language outcome after stroke.

Brain 2010 Apr 18;133(Pt 4):1252-64. Epub 2010 Mar 18.

Department of Neurology, University Medical Centre Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1093/brain/awq021DOI Listing
April 2010

Rotational invariance based on Fourier analysis in polar and spherical coordinates.

IEEE Trans Pattern Anal Mach Intell 2009 Sep;31(9):1715-22

Computer Science Department and the Centre for Biological Signaling Studies, University of Freiburg, Freiburg, Germany.

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http://dx.doi.org/10.1109/TPAMI.2009.29DOI Listing
September 2009

On-line monitoring and identification of bioaerosols.

Anal Chem 2006 Apr;78(7):2163-70

Institut für Physikalische Chemie, Friedrich-Schiller-Universität Jena, Helmholtzweg 4, D-07743 Jena, Germany.

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http://dx.doi.org/10.1021/ac0514974DOI Listing
April 2006