Publications by authors named "Ola Wallerman"

30Publications

Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades.

Curr Biol 2019 08 8;29(16):2758-2765.e6. Epub 2019 Aug 8.

Department of Organismal Biology, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2019.07.025DOI Listing
August 2019

Chromosomal inversions associated with environmental adaptation in honeybees.

Mol Ecol 2019 03 21;28(6):1358-1374. Epub 2018 Dec 21.

Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://doi.wiley.com/10.1111/mec.14944
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http://dx.doi.org/10.1111/mec.14944DOI Listing
March 2019

ZBED6 negatively regulates insulin production, neuronal differentiation, and cell aggregation in MIN6 cells.

FASEB J 2019 01 29;33(1):88-100. Epub 2018 Jun 29.

Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1096/fj.201600835RDOI Listing
January 2019

Tryptase-catalyzed core histone truncation: A novel epigenetic regulatory mechanism in mast cells.

J Allergy Clin Immunol 2017 Aug 17;140(2):474-485. Epub 2017 Jan 17.

Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2016.11.044DOI Listing
August 2017

Genetic prevention of hepatitis C virus-induced liver fibrosis by allele-specific downregulation of MERTK.

Hepatol Res 2017 Jul 29;47(8):826-830. Epub 2016 Sep 29.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1111/hepr.12810DOI Listing
July 2017

Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals.

Genomics 2016 06 26;107(6):248-54. Epub 2016 Apr 26.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2016.04.006DOI Listing
June 2016

Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro.

Sci Rep 2016 Jan 11;6:19006. Epub 2016 Jan 11.

Science for Life Laboratory, Department of Medical Cell Biology, Uppsala University, 751 23 Uppsala, Sweden.

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http://dx.doi.org/10.1038/srep19006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707466PMC
January 2016

lobChIP: from cells to sequencing ready ChIP libraries in a single day.

Epigenetics Chromatin 2015 21;8:25. Epub 2015 Jul 21.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, BMC, Uppsala University, Box 815, 75108 Uppsala, Sweden.

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http://dx.doi.org/10.1186/s13072-015-0017-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507313PMC
July 2015

Transcriptional modulator ZBED6 affects cell cycle and growth of human colorectal cancer cells.

Proc Natl Acad Sci U S A 2015 Jun 8;112(25):7743-8. Epub 2015 Jun 8.

Science For Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, SE-751 85 Uppsala, Sweden;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1509193112
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http://dx.doi.org/10.1073/pnas.1509193112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485122PMC
June 2015

Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells.

Biochim Biophys Acta 2014 Nov 8;1839(11):1341-50. Epub 2014 Aug 8.

Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden; Institute of Computer Science, Polish Academy of Sciences, Warszawa, Poland. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18749399140019
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http://dx.doi.org/10.1016/j.bbagrm.2014.07.010DOI Listing
November 2014

Nucleosome regulatory dynamics in response to TGFβ.

Nucleic Acids Res 2014 Jun 25;42(11):6921-34. Epub 2014 Apr 25.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, BMC, Box 815, Uppsala University, SE-75108 Uppsala, Sweden

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gku326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066760PMC
June 2014

ZBED6 modulates the transcription of myogenic genes in mouse myoblast cells.

PLoS One 2014 8;9(4):e94187. Epub 2014 Apr 8.

Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0094187PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3979763PMC
January 2015

ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer.

BMC Med Genomics 2013 Nov 8;6:50. Epub 2013 Nov 8.

Science for Life Laboratory, Department of Immunology, Genetics and Pathology, BMC, Uppsala University, PO BOX 815, Uppsala, SE 751 08, Sweden.

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http://dx.doi.org/10.1186/1755-8794-6-50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3831757PMC
November 2013

Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells.

Proc Natl Acad Sci U S A 2013 Oct 16;110(40):15997-6002. Epub 2013 Sep 16.

Science for Life Laboratory, Department of Medical Cell Biology, and Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-75123 Uppsala, Sweden.

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http://dx.doi.org/10.1073/pnas.1303625110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791784PMC
October 2013

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa.

BMC Cancer 2011 Oct 19;11:450. Epub 2011 Oct 19.

The Linnaeus Centre for Bioinformatics, Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Sweden.

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http://dx.doi.org/10.1186/1471-2407-11-450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3216894PMC
October 2011

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Placental transfer of quetiapine in relation to P-glycoprotein activity.

J Psychopharmacol 2007 Sep 26;21(7):751-6. Epub 2007 Jan 26.

Department of Pharmacology and Clinical Pharmacology, Joint Clinical Biochemistry Laboratory of University of Turku, Turku University Central Hospital, Turku, Finland.

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http://jop.sagepub.com/content/early/2007/01/26/026988110607
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http://jop.sagepub.com/cgi/doi/10.1177/0269881106074065
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http://dx.doi.org/10.1177/0269881106074065DOI Listing
September 2007

Functional role of P-glycoprotein in the human blood-placental barrier.

Clin Pharmacol Ther 2005 Aug;78(2):123-31

Department of Pharmacology and Clinical Pharmacology, University of Turku, Finland.

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http://dx.doi.org/10.1016/j.clpt.2005.04.014DOI Listing
August 2005

Evidence for a second gene for primary microcephaly at MCPH5 on chromosome 1.

Hereditas 2003 ;139(1):64-7

Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1111/j.1601-5223.2003.01682.xDOI Listing
February 2004