Ognjen Perisic

Ognjen Perisic

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Ognjen Perisic

Ognjen Perisic

Publications by authors named "Ognjen Perisic"

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15Publications

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Sensitive effect of linker histone binding mode and subtype on chromatin condensation.

Nucleic Acids Res 2019 06;47(10):4948-4957

Department of Chemistry, New York University, 1001 Silver, 100 Washington Square East, New York, NY 10003, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gkz234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6547455PMC
June 2019

Heterodimer Binding Scaffolds Recognition via the Analysis of Kinetically Hot Residues.

Authors:
Ognjen Perišić

Pharmaceuticals (Basel) 2018 Mar 16;11(1). Epub 2018 Mar 16.

Big Blue Genomics, Vojvode Brane 32, 11000 Belgrade, Serbia.

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http://dx.doi.org/10.3390/ph11010029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874725PMC
March 2018

Dependence of the Linker Histone and Chromatin Condensation on the Nucleosome Environment.

J Phys Chem B 2017 08 11;121(33):7823-7832. Epub 2017 Aug 11.

Department of Chemistry, New York University , 1001 Silver, 100 Washington Square East, New York, New York 10003, United States.

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http://dx.doi.org/10.1021/acs.jpcb.7b04917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6203934PMC
August 2017

Parallel targeted next generation sequencing of childhood and adult acute myeloid leukemia patients reveals uniform genomic profile of the disease.

Tumour Biol 2016 Oct 27;37(10):13391-13401. Epub 2016 Jul 27.

Laboratory for Molecular Biomedicine, Institute for Molecular Genetica and Genetic Engineering University of Belgrade, Vojvode Stepe 444a, Belgrade, 11010, Serbia.

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http://dx.doi.org/10.1007/s13277-016-5142-7DOI Listing
October 2016

Computational strategies to address chromatin structure problems.

Phys Biol 2016 06 25;13(3):035006. Epub 2016 Jun 25.

Big Blue Genomics, 11000 Belgrade, Serbia.

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http://dx.doi.org/10.1088/1478-3975/13/3/035006DOI Listing
June 2016

On the improvement of free-energy calculation from steered molecular dynamics simulations using adaptive stochastic perturbation protocols.

PLoS One 2014 18;9(9):e101810. Epub 2014 Sep 18.

Shanghai Institute of Medical Genetics, Shanghai Children's Hospital, Shanghai Jiaotong University, Shanghai, China; Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101810PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4169427PMC
June 2015

Pulling-spring modulation as a method for improving the potential-of-mean-force reconstruction in single-molecule manipulation experiments.

Authors:
Ognjen Perišić

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Jan 4;87(1):013303. Epub 2013 Jan 4.

Vojvode Brane 32, 11000 Belgrade, Serbia.

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http://dx.doi.org/10.1103/PhysRevE.87.013303DOI Listing
January 2013

Efficient free-energy-profile reconstruction using adaptive stochastic perturbation protocols.

Phys Rev E Stat Nonlin Soft Matter Phys 2011 Nov 21;84(5 Pt 2):056705. Epub 2011 Nov 21.

Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607, USA.

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http://dx.doi.org/10.1103/PhysRevE.84.056705DOI Listing
November 2011

Modeling studies of chromatin fiber structure as a function of DNA linker length.

J Mol Biol 2010 Nov 13;403(5):777-802. Epub 2010 Aug 13.

Department of Chemistry, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1016/j.jmb.2010.07.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966533PMC
November 2010

Ligand efficiency indices for an effective mapping of chemico-biological space: the concept of an atlas-like representation.

Drug Discov Today 2010 Oct 19;15(19-20):804-11. Epub 2010 Aug 19.

Center for Pharmaceutical Biotechnology, University of Illinois at Chicago, 60607, USA.

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http://dx.doi.org/10.1016/j.drudis.2010.08.004DOI Listing
October 2010

Mechanical signaling on the single protein level studied using steered molecular dynamics.

Cell Biochem Biophys 2009 11;55(3):141-52. Epub 2009 Aug 11.

Bioinformatics Program, Department of Bioengineering, University of Illinois at Chicago, Chicago, IL, 60607, USA.

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http://dx.doi.org/10.1007/s12013-009-9064-5DOI Listing
December 2009

Mesoscale simulations of two nucleosome-repeat length oligonucleosomes.

Phys Chem Chem Phys 2009 Dec 20;11(45):10729-37. Epub 2009 Oct 20.

Department of Chemistry and Courant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, New York 10012, USA.

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http://dx.doi.org/10.1039/b918629hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3182521PMC
December 2009

Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability.

Proc Natl Acad Sci U S A 2007 May 21;104(22):9278-83. Epub 2007 May 21.

Department of Chemistry, University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.1073/pnas.0700351104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1890485PMC
May 2007