Obi L Griffith

Obi L Griffith

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Obi L Griffith

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Noninvasive Detection of High-Risk Adenomas Using Stool-Derived Eukaryotic RNA Sequences as Biomarkers.

Gastroenterology 2019 09 30;157(3):884-887.e3. Epub 2019 May 30.

McDonnell Genome Institute, Washington University School of Medicine, St Louis, Missouri; Department of Genetics, Washington University School of Medicine, St Louis, Missouri; Division of Oncology, Department of Medicine, Washington University School of Medicine, St Louis, Missouri; Siteman Cancer Center, Washington University School of Medicine, St Louis, Missouri. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2019.05.058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6707888PMC
September 2019

A Spontaneous Aggressive ERα+ Mammary Tumor Model Is Driven by Kras Activation.

Cell Rep 2019 Aug;28(6):1526-1537.e4

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, MO 63108, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MO 63108, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO 63108, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.06.098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6713291PMC
August 2019

Best practices for bioinformatic characterization of neoantigens for clinical utility.

Genome Med 2019 08 28;11(1):56. Epub 2019 Aug 28.

Division of Oncology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.

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http://dx.doi.org/10.1186/s13073-019-0666-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6714459PMC
August 2019

Oral Cavity Squamous Cell Carcinoma Xenografts Retain Complex Genotypes and Intertumor Molecular Heterogeneity.

Cell Rep 2018 Aug;24(8):2167-2178

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA; Department of Medicine, Division of Medical Oncology, Washington University School of Medicine, St. Louis, MO 63108, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MO 63108, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO 63108, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183116
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http://dx.doi.org/10.1016/j.celrep.2018.07.058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417872PMC
August 2018

Cancer Immunogenomics: Computational Neoantigen Identification and Vaccine Design.

Cold Spring Harb Symp Quant Biol 2016 7;81:105-111. Epub 2017 Apr 7.

Nationwide Children's Hospital, Institute for Genomic Medicine, Columbus, Ohio 43205.

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http://dx.doi.org/10.1101/sqb.2016.81.030726DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5702270PMC
February 2018

DGIdb 3.0: a redesign and expansion of the drug-gene interaction database.

Nucleic Acids Res 2018 01;46(D1):D1068-D1073

McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.

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http://dx.doi.org/10.1093/nar/gkx1143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888642PMC
January 2018

Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes.

Exp Hematol 2017 11 28;55:19-33. Epub 2017 Jul 28.

The McDonnell Genome Institute, Washington University, St. Louis, MO; Department of Medicine, Washington University, St. Louis, MO; Siteman Cancer Center, Washington University, St. Louis, MO; Department of Biomedical Engineering, Washington University, St. Louis, MO. Electronic address:

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http://dx.doi.org/10.1016/j.exphem.2017.07.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772960PMC
November 2017

Neoantigens in immunotherapy and personalized vaccines: Implications for head and neck squamous cell carcinoma.

Oral Oncol 2017 08 14;71:169-176. Epub 2016 Oct 14.

Department of Otolaryngology, Washington University School of Medicine, St. Louis, United States; Brigham and Women's Hospital and Dana-Farber Cancer Institute, Boston, MA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.oraloncology.2016.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423853PMC
August 2017

Melorheostosis: Exome sequencing of an associated dermatosis implicates postzygotic mosaicism of mutated KRAS.

Bone 2017 Aug 21;101:145-155. Epub 2017 Apr 21.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO 63110, USA; Division of Genomics and Bioinformatics, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bone.2017.04.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5518630PMC
August 2017

Clinical implications of neoepitope landscapes for adult and pediatric cancers.

Genome Med 2017 08 31;9(1):77. Epub 2017 Aug 31.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.

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http://dx.doi.org/10.1186/s13073-017-0470-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577778PMC
August 2017

GenVisR: Genomic Visualizations in R.

Bioinformatics 2016 10 10;32(19):3012-4. Epub 2016 Jun 10.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA Siteman Cancer Center Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5039916PMC
October 2016

FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer.

Proc Natl Acad Sci U S A 2016 10 6;113(43):E6600-E6609. Epub 2016 Oct 6.

Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030; Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030; Department of Medicine, Baylor College of Medicine, Houston, TX 77030;

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http://dx.doi.org/10.1073/pnas.1612835113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5087040PMC
October 2016

Truncating Prolactin Receptor Mutations Promote Tumor Growth in Murine Estrogen Receptor-Alpha Mammary Carcinomas.

Cell Rep 2016 09;17(1):249-260

McDonnell Genome Institute, Washington University School of Medicine, 4444 Forest Park Ave., St. Louis, MO 63108, USA; Department of Medicine, Washington University School of Medicine, 660 S Euclid Ave., St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University School of Medicine, 4921 Parkview Pl., St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine, 660 S Euclid Ave., St. Louis, MO 63110, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.08.076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557050PMC
September 2016

High-performance web services for querying gene and variant annotation.

Genome Biol 2016 05 6;17(1):91. Epub 2016 May 6.

Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1186/s13059-016-0953-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858870PMC
May 2016

DGIdb 2.0: mining clinically relevant drug-gene interactions.

Nucleic Acids Res 2016 Jan 3;44(D1):D1036-44. Epub 2015 Nov 3.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO 63110, USA Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA

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http://dx.doi.org/10.1093/nar/gkv1165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702839PMC
January 2016

ORegAnno 3.0: a community-driven resource for curated regulatory annotation.

Nucleic Acids Res 2016 Jan 17;44(D1):D126-32. Epub 2015 Nov 17.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO 63110, USA Department of Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, MO 63110, USA

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http://dx.doi.org/10.1093/nar/gkv1203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702855PMC
January 2016

pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens.

Genome Med 2016 Jan 29;8(1):11. Epub 2016 Jan 29.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.

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http://dx.doi.org/10.1186/s13073-016-0264-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733280PMC
January 2016

A common founding clone with TP53 and PTEN mutations gives rise to a concurrent germ cell tumor and acute megakaryoblastic leukemia.

Cold Spring Harb Mol Case Stud 2016 Jan;2(1):a000687

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63110, USA;; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110, USA;

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http://dx.doi.org/10.1101/mcs.a000687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849848PMC
January 2016

Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data.

Bioinformatics 2015 Nov 25;31(22):3561-8. Epub 2015 Jul 25.

Division of Oncology, Department of Medicine, Washington University School of Medicine.

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http://dx.doi.org/10.1093/bioinformatics/btv430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4757952PMC
November 2015

Optimizing cancer genome sequencing and analysis.

Cell Syst 2015 Sep;1(3):210-223

The McDonnell Genome Institute, Washington University, St. Louis, MO, USA, 63108 ; Department of Genetics, Washington University, St. Louis, MO, USA, 63108 ; Siteman Cancer Center, Washington University, St. Louis, MO, USA, 63108 ; Department of Medicine, Washington University, St. Louis, MO, USA, 63108.

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http://dx.doi.org/10.1016/j.cels.2015.08.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669575PMC
September 2015

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.

PLoS Comput Biol 2015 Aug 6;11(8):e1004393. Epub 2015 Aug 6.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004393DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4527835PMC
August 2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol 2015 Jul 9;11(7):e1004274. Epub 2015 Jul 9.

The Genome Institute, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497734PMC
July 2015

Identification of gene regulation patterns underlying both oestrogen- and tamoxifen-stimulated cell growth through global gene expression profiling in breast cancer cells.

Eur J Cancer 2014 Nov 15;50(16):2877-86. Epub 2014 Sep 15.

Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington DC 20057, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2014.08.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4210771PMC
November 2014

SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution.

PLoS Comput Biol 2014 Aug 7;10(8):e1003665. Epub 2014 Aug 7.

The Genome Institute, Washington University, St. Louis, Missouri, United States of America; Department of Internal Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Genetics, Washington University, St. Louis, Missouri, United States of America; Siteman Cancer Center, Barnes-Jewish Hospital, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4125065PMC
August 2014

cDNA hybrid capture improves transcriptome analysis on low-input and archived samples.

J Mol Diagn 2014 Jul 9;16(4):440-51. Epub 2014 May 9.

The Genome Institute, Washington University School of Medicine, St. Louis, Missouri; Division of Oncology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri; Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, Missouri. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2014.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078367PMC
July 2014

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction.

JMIR Serious Games 2014 Jul 29;2(2):e7. Epub 2014 Jul 29.

The Scripps Research Institute, Department of Molecular and Experimental Medicine, La Jolla, CA, United States.

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http://dx.doi.org/10.2196/games.3350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4307816PMC
July 2014

A robust prognostic signature for hormone-positive node-negative breast cancer.

Genome Med 2013 11;5(10):92. Epub 2013 Oct 11.

Department of Cancer and DNA Damage Responses, Life Sciences Division, Lawrence Berkeley National Laboratory, One Cyclotron Rd, Berkeley 94720, CA, USA ; Department of Biomedical Engineering, Center for Spatial Systems Biomedicine, Knight Cancer Institute, Oregon Health and Science University, 3303 SW Bond Ave, Portland, 97239, OR, USA.

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http://dx.doi.org/10.1186/gm496DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3961800PMC
May 2014

DGIdb: mining the druggable genome.

Nat Methods 2013 Dec 13;10(12):1209-10. Epub 2013 Oct 13.

1] The Genome Institute, Washington University School of Medicine, St. Louis, Missouri, USA. [2] Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, USA. [3].

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http://dx.doi.org/10.1038/nmeth.2689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851581PMC
December 2013

c-Src modulates estrogen-induced stress and apoptosis in estrogen-deprived breast cancer cells.

Cancer Res 2013 Jul 23;73(14):4510-20. Epub 2013 May 23.

Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC 20057, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-12-4152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715569PMC
July 2013

Identification of PADI2 as a potential breast cancer biomarker and therapeutic target.

BMC Cancer 2012 Oct 30;12:500. Epub 2012 Oct 30.

Baker Institute for Animal Health, College of Veterinary Medicine, Cornell University, 122 Hungerford Hill Road, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1186/1471-2407-12-500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571905PMC
October 2012

'Omic approaches to preventing or managing metastatic breast cancer.

Breast Cancer Res 2011 8;13(6):230. Epub 2011 Dec 8.

Lawrence Berkeley National Laboratory, Life Sciences Division, Cancer and DNA Damage Responses, One Cyclotron Road, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1186/bcr2923DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326544PMC
June 2012

Detection and management of hypothyroidism following thyroid lobectomy: evaluation of a clinical algorithm.

Ann Surg Oncol 2011 Sep 10;18(9):2548-54. Epub 2011 Mar 10.

Department of Surgery, St. Paul's Hospital & The University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.1245/s10434-011-1627-1DOI Listing
September 2011

Immunophenotyping of thyroid tumors identifies molecular markers altered during transformation of differentiated into anaplastic carcinoma.

Am J Surg 2011 May;201(5):580-6

Department of Surgery, St Paul's Hospital/University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.1016/j.amjsurg.2011.01.010DOI Listing
May 2011

Annotating the regulatory genome.

Methods Mol Biol 2010 ;674:313-49

Wellcome Trust Sanger Institute, Cambridge, UK.

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http://link.springer.com/10.1007/978-1-60761-854-6_20
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http://dx.doi.org/10.1007/978-1-60761-854-6_20DOI Listing
December 2010

Diagnostic utility of galectin-3 in thyroid cancer.

Am J Pathol 2010 May 2;176(5):2067-81. Epub 2010 Apr 2.

Department of Surgery, St. Paul's Hospital and University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.2353/ajpath.2010.090353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861072PMC
May 2010

Anaplastic thyroid carcinoma exhibits intratumoral molecular homogeneity for a therapeutic target panel.

Anticancer Res 2009 Jul;29(7):2437-44

Department of Surgery, St Paul's Hospital, University of British Columbia, Vancouver, BC V6Z-1Y6, Canada.

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July 2009

Molecular phenotyping of thyroid tumors identifies a marker panel for differentiated thyroid cancer diagnosis.

Ann Surg Oncol 2008 Oct 9;15(10):2811-26. Epub 2008 Jul 9.

Department of Surgery, St. Paul's Hospital, University of British Columbia, C303-1081 Burrard Street, Vancouver, BC, Canada.

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http://dx.doi.org/10.1245/s10434-008-0034-8DOI Listing
October 2008

Phosphorylated caveolin-1 regulates Rho/ROCK-dependent focal adhesion dynamics and tumor cell migration and invasion.

Cancer Res 2008 Oct;68(20):8210-20

Department of Cellular and Physiological Sciences, Life Sciences Institute, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1158/0008-5472.CAN-08-0343DOI Listing
October 2008

Biomarker panel diagnosis of thyroid cancer: a critical review.

Expert Rev Anticancer Ther 2008 Sep;8(9):1399-413

Department of Medical Genetics, University of British Columbia & Michael Smith Genome, Sciences Center, British Columbia Cancer Research Centre, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6, Canada.

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http://dx.doi.org/10.1586/14737140.8.9.1399DOI Listing
September 2008

Text-mining assisted regulatory annotation.

Genome Biol 2008 13;9(2):R31. Epub 2008 Feb 13.

Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000, Belgium.

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http://dx.doi.org/10.1186/gb-2008-9-2-r31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374703PMC
May 2008

Clinical utility of type 1 growth factor receptor expression in colon cancer.

Am J Surg 2008 May;195(5):604-10

Department of Surgery, St.Paul's Hospital, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1016/j.amjsurg.2007.12.032DOI Listing
May 2008

Evaluation of type 1 growth factor receptor family expression in benign and malignant thyroid lesions.

Am J Surg 2008 May;195(5):667-73; discussion 673

Department of Surgery, St. Paul's Hospital, University of British Columbia, C303-1081 Burrard St., Vancouver, British Columbia, Canada V6Z-1Y6.

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http://dx.doi.org/10.1016/j.amjsurg.2008.01.008DOI Listing
May 2008

Meta-analysis of colorectal cancer gene expression profiling studies identifies consistently reported candidate biomarkers.

Cancer Epidemiol Biomarkers Prev 2008 Mar;17(3):543-52

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Research Centre, Suite 100, 570 West 10th Avenue, Vancouver, British Columbia, Canada V5Z 4S6.

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http://dx.doi.org/10.1158/1055-9965.EPI-07-2615DOI Listing
March 2008

Cell cycle regulators show diagnostic and prognostic utility for differentiated thyroid cancer.

Ann Surg Oncol 2007 Dec 20;14(12):3403-11. Epub 2007 Sep 20.

Department of Surgery, St. Paul's Hospital, University of British Columbia, C303-1081 Burrard Street, V6Z 1Y6, Vancouver, BC, Canada.

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http://dx.doi.org/10.1245/s10434-007-9572-8DOI Listing
December 2007

Identification of molecular markers altered during transformation of differentiated into anaplastic thyroid carcinoma.

Arch Surg 2007 Aug;142(8):717-27; discussion 727-9

Department of Surgery, St Paul's Hospital, University of British Columbia, C303-1081 Burrard St, Vancouver, BC, Canada V6Z-1Y6.

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http://archsurg.jamanetwork.com/article.aspx?doi=10.1001/arc
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http://dx.doi.org/10.1001/archsurg.142.8.717DOI Listing
August 2007

A survey of genomic properties for the detection of regulatory polymorphisms.

PLoS Comput Biol 2007 Jun 25;3(6):e106. Epub 2007 Apr 25.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.plos.org/10.1371/journal.pcbi.0030106
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http://dx.doi.org/10.1371/journal.pcbi.0030106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1892352PMC
June 2007

Meta-analysis and meta-review of thyroid cancer gene expression profiling studies identifies important diagnostic biomarkers.

J Clin Oncol 2006 Nov;24(31):5043-51

Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, Canada.

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http://ascopubs.org/doi/10.1200/JCO.2006.06.7330
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http://dx.doi.org/10.1200/JCO.2006.06.7330DOI Listing
November 2006

Sequence biases in large scale gene expression profiling data.

Nucleic Acids Res 2006 Jul 13;34(12):e83. Epub 2006 Jul 13.

Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada.

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http://dx.doi.org/10.1093/nar/gkl404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1524917PMC
July 2006

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Authors:
Daniela S Gerhard Lukas Wagner Elise A Feingold Carolyn M Shenmen Lynette H Grouse Greg Schuler Steven L Klein Susan Old Rebekah Rasooly Peter Good Mark Guyer Allison M Peck Jeffery G Derge David Lipman Francis S Collins Wonhee Jang Steven Sherry Mike Feolo Leonie Misquitta Eduardo Lee Kirill Rotmistrovsky Susan F Greenhut Carl F Schaefer Kenneth Buetow Tom I Bonner David Haussler Jim Kent Mark Kiekhaus Terry Furey Michael Brent Christa Prange Kirsten Schreiber Nicole Shapiro Narayan K Bhat Ralph F Hopkins Florence Hsie Tom Driscoll M Bento Soares Tom L Casavant Todd E Scheetz Michael J Brown-stein Ted B Usdin Shiraki Toshiyuki Piero Carninci Yulan Piao Dawood B Dudekula Minoru S H Ko Koichi Kawakami Yutaka Suzuki Sumio Sugano C E Gruber M R Smith Blake Simmons Troy Moore Richard Waterman Stephen L Johnson Yijun Ruan Chia Lin Wei S Mathavan Preethi H Gunaratne Jiaqian Wu Angela M Garcia Stephen W Hulyk Edwin Fuh Ye Yuan Anna Sneed Carla Kowis Anne Hodgson Donna M Muzny John McPherson Richard A Gibbs Jessica Fahey Erin Helton Mark Ketteman Anuradha Madan Stephanie Rodrigues Amy Sanchez Michelle Whiting Anup Madari Alice C Young Keith D Wetherby Steven J Granite Peggy N Kwong Charles P Brinkley Russell L Pearson Gerard G Bouffard Robert W Blakesly Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Yaron S N Butterfield Malachi Griffith Obi L Griffith Martin I Krzywinski Nancy Liao Ryan Morin Ryan Morrin Diana Palmquist Anca S Petrescu Ursula Skalska Duane E Smailus Jeff M Stott Angelique Schnerch Jacqueline E Schein Steven J M Jones Robert A Holt Agnes Baross Marco A Marra Sandra Clifton Kathryn A Makowski Stephanie Bosak Joel Malek

Genome Res 2004 Oct;14(10B):2121-7

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http://dx.doi.org/10.1101/gr.2596504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC528928PMC
October 2004