Nouria Hernandez

Nouria Hernandez

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Nouria Hernandez

Nouria Hernandez

Publications by authors named "Nouria Hernandez"

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How to Recruit the Correct RNA Polymerase? Lessons from snRNA Genes.

Trends Genet 2019 Jun 27;35(6):457-469. Epub 2019 Apr 27.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2019.04.001DOI Listing
June 2019

Differential regulation of RNA polymerase III genes during liver regeneration.

Nucleic Acids Res 2019 02;47(4):1786-1796

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gky1282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393285PMC
February 2019

Metabolic programming a lean phenotype by deregulation of RNA polymerase III.

Proc Natl Acad Sci U S A 2018 11 14;115(48):12182-12187. Epub 2018 Nov 14.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1073/pnas.1815590115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275490PMC
November 2018

Cycles of gene expression and genome response during mammalian tissue regeneration.

Epigenetics Chromatin 2018 09 12;11(1):52. Epub 2018 Sep 12.

Center for Integrative Genomics, Génopode, University of Lausanne, 1015, Lausanne, Switzerland.

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http://dx.doi.org/10.1186/s13072-018-0222-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6134763PMC
September 2018

Mechanism of selective recruitment of RNA polymerases II and III to snRNA gene promoters.

Genes Dev 2018 05 21;32(9-10):711-722. Epub 2018 May 21.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gad.314245.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004067PMC
May 2018

Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.

Genome Res 2017 06 24;27(6):973-984. Epub 2017 Mar 24.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gr.217521.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453330PMC
June 2017

Transcriptional interference by RNA polymerase III affects expression of the gene.

Genes Dev 2017 02 13;31(4):413-421. Epub 2017 Mar 13.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gad.293324.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5358760PMC
February 2017

Human MAF1 targets and represses active RNA polymerase III genes by preventing recruitment rather than inducing long-term transcriptional arrest.

Genome Res 2016 05 3;26(5):624-35. Epub 2016 Mar 3.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland;

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http://dx.doi.org/10.1101/gr.201400.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864463PMC
May 2016

Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2.

Cell 2015 Dec;163(6):1375-87

Division of Structural Biology, The Institute of Cancer Research, London SW7 3RP, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671959PMC
December 2015

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.

Cell 2015 Aug 20;162(5):1039-50. Epub 2015 Aug 20.

Swiss Institute of Bioinformatics, Lausanne 1015, Switzerland; Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva 1211, Switzerland; Institute of Genetics and Genomics in Geneva, University of Geneva, Geneva 1211, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.08.001DOI Listing
August 2015

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization.

Genome Res 2014 Jul 7;24(7):1157-68. Epub 2014 Apr 7.

Bioinformatics Core Facility, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland; Department of Oncology and the Ludwig Center for Cancer Research, Faculty of Biology and Medicine, University of Lausanne, 1011 Lausanne, Switzerland.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.168260.113
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http://dx.doi.org/10.1101/gr.168260.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079971PMC
July 2014

Gene duplication and neofunctionalization: POLR3G and POLR3GL.

Genome Res 2014 Jan 9;24(1):37-51. Epub 2013 Oct 9.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland;

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http://genome.cshlp.org/cgi/doi/10.1101/gr.161570.113
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http://dx.doi.org/10.1101/gr.161570.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3875860PMC
January 2014

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Bioinformatics 2014 Jan 18;30(2):165-71. Epub 2013 Nov 18.

Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland, Department of Genetic Medicine and Development, University of Geneva Medical School, Institute of Genetics and Genomics in Geneva, University of Geneva, 1211, Geneva, Switzerland and Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1011, Lausanne, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btt667DOI Listing
January 2014

Genomic study of RNA polymerase II and III SNAPc-bound promoters reveals a gene transcribed by both enzymes and a broad use of common activators.

PLoS Genet 2012 15;8(11):e1003028. Epub 2012 Nov 15.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1371/journal.pgen.1003028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499247PMC
May 2013

Eeny meeny miny moe, catch a transcript by the toe, or how to enumerate eukaryotic transcripts.

Genes Dev 2012 Aug;26(15):1643-7

Institut Jacques Monod, CNRS UMR, University of Paris-Diderot, France.

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http://dx.doi.org/10.1101/gad.199349.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3418581PMC
August 2012

Widespread occurrence of non-canonical transcription termination by human RNA polymerase III.

Nucleic Acids Res 2011 Jul 17;39(13):5499-512. Epub 2011 Mar 17.

Dipartimento di Biochimica e Biologia Molecolare, Università degli Studi di Parma, Viale G.P. Usberti 23/A, 43100 Parma, Italy.

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http://dx.doi.org/10.1093/nar/gkr074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141230PMC
July 2011

mTORC1 directly phosphorylates and regulates human MAF1.

Mol Cell Biol 2010 Aug 1;30(15):3749-57. Epub 2010 Jun 1.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1128/MCB.00319-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916396PMC
August 2010

Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells.

Genome Res 2010 Jun 22;20(6):710-21. Epub 2010 Apr 22.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne 1015, Switzerland.

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http://dx.doi.org/10.1101/gr.101337.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877568PMC
June 2010

Mitotic functions for SNAP45, a subunit of the small nuclear RNA-activating protein complex SNAPc.

J Biol Chem 2008 May 20;283(21):14845-56. Epub 2008 Mar 20.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1074/jbc.M800833200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386947PMC
May 2008

CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription.

Mol Cell Biol 2007 Dec 15;27(24):8729-38. Epub 2007 Oct 15.

Stony Brook University, Graduate Program in Molecular and Cellular Biology, Stony Brook, New York 11794, USA.

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http://dx.doi.org/10.1128/MCB.00846-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2169411PMC
December 2007

On a roll for new TRF targets.

Genes Dev 2007 Nov;21(22):2855-60

Center for Integrative Genomics, Génopode Building, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gad.1623207DOI Listing
November 2007

Identification of novel functional TBP-binding sites and general factor repertoires.

EMBO J 2007 Feb 1;26(4):944-54. Epub 2007 Feb 1.

Department of Molecular Biology, Nijmegen Centre for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/sj.emboj.7601550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852848PMC
February 2007

Maf1, a new player in the regulation of human RNA polymerase III transcription.

PLoS One 2006 Dec 27;1:e134. Epub 2006 Dec 27.

Center for Integrative Genomics (CIG), University of Lausanne, Lausanne, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000134PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1762419PMC
December 2006

A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes.

Gene 2006 Aug 20;377:96-108. Epub 2006 May 20.

Stony Brook University, Graduate Program in Molecular and Cellular Pharmacology, Stony Brook, NY 11794, USA.

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http://dx.doi.org/10.1016/j.gene.2006.03.012DOI Listing
August 2006

Does Pol I talk to Pol II? Coordination of RNA polymerases in ribosome biogenesis.

Genes Dev 2006 Aug;20(15):1982-5

Center for Integrative Genomics, University of Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gad.1460706DOI Listing
August 2006

Actin's latest act: polymerizing to facilitate transcription?

Nat Cell Biol 2006 Jul;8(7):650-1

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http://dx.doi.org/10.1038/ncb0706-650DOI Listing
July 2006

Artificial zinc finger fusions targeting Sp1-binding sites and the trans-activator-responsive element potently repress transcription and replication of HIV-1.

J Biol Chem 2005 Jun 2;280(22):21545-52. Epub 2005 Mar 2.

Laboratory of Retroviruses and Gene Therapy, Indang Institute of Molecular Biology & Department of Medical Laboratory Science, Inje University, 64 Jeodong 2nd Street, Indang Building, Jung-Ku, Seoul 100-032, Korea.

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http://dx.doi.org/10.1074/jbc.M414136200DOI Listing
June 2005

A role for beta-actin in RNA polymerase III transcription.

Genes Dev 2004 Dec 1;18(24):3010-5. Epub 2004 Dec 1.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

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http://dx.doi.org/10.1101/gad.1250804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC535912PMC
December 2004

CK2 phosphorylation of Bdp1 executes cell cycle-specific RNA polymerase III transcription repression.

Mol Cell 2004 Oct;16(1):81-92

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1016/j.molcel.2004.09.008DOI Listing
October 2004

A minimal RNA polymerase III transcription system from human cells reveals positive and negative regulatory roles for CK2.

Mol Cell 2003 Sep;12(3):699-709

Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA .

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http://dx.doi.org/10.1016/j.molcel.2003.08.011DOI Listing
September 2003

Flexible DNA binding of the BTB/POZ-domain protein FBI-1.

J Biol Chem 2003 Aug 15;278(31):29327-35. Epub 2003 May 15.

Cold Spring Harbor Laboratory and Howard Hughes Medical Institute, Cold Spring Harbor, New York 11724, USA.

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http://dx.doi.org/10.1074/jbc.M302980200DOI Listing
August 2003

A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members.

Mol Cell 2003 Jan;11(1):151-61

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1016/s1097-2765(02)00797-9DOI Listing
January 2003

Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits.

Mol Cell Biol 2002 Nov;22(22):8044-55

Graduate Program of Molecular and Cellular Biology, State University of New York at Stony Brook, Stony Brook, New York 11794, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC134740PMC
http://dx.doi.org/10.1128/mcb.22.22.8044-8055.2002DOI Listing
November 2002

Redundant cooperative interactions for assembly of a human U6 transcription initiation complex.

Mol Cell Biol 2002 Nov;22(22):8067-78

Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC134731PMC
http://dx.doi.org/10.1128/mcb.22.22.8067-8078.2002DOI Listing
November 2002

Recruitment of RNA polymerase III to its target promoters.

Genes Dev 2002 Oct;16(20):2593-620

Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

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http://dx.doi.org/10.1101/gad.1018902DOI Listing
October 2002