Nomi Harris

Nomi Harris

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Nomi Harris

Nomi Harris

Publications by authors named "Nomi Harris"

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19Publications

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ROBOT: A Tool for Automating Ontology Workflows.

BMC Bioinformatics 2019 Jul 29;20(1):407. Epub 2019 Jul 29.

Knocean Inc., Toronto, Ontario, Canada.

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http://dx.doi.org/10.1186/s12859-019-3002-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664714PMC
July 2019

The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.

Dev Cell 2019 04 28;49(1):10-29. Epub 2019 Mar 28.

Department of Biomedical Informatics, University of Cincinnati College of Medicine, and Cincinnati Children's Hospital Medical Center, Division of Biomedical Informatics, Cincinnati, OH 45229, USA.

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http://dx.doi.org/10.1016/j.devcel.2019.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6616346PMC
April 2019

Apollo: Democratizing genome annotation.

PLoS Comput Biol 2019 02 6;15(2):e1006790. Epub 2019 Feb 6.

Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380598PMC
February 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Nucleic Acids Res 2019 Jan;47(D1):D1018-D1027

Monarch Initiative, monarchinitiative.org.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324074PMC
January 2019

Reconstruction and Analysis of Central Metabolism in Microbes.

Methods Mol Biol 2018 ;1716:111-129

Computation Institute, University of Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1007/978-1-4939-7528-0_5DOI Listing
July 2018

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Nat Biotechnol 2018 07;36(7):566-569

Computer Science and Math, Computer Science Initiative, Brookhaven National Laboratory, Upton, New York, USA.

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http://dx.doi.org/10.1038/nbt.4163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6870991PMC
July 2018

Using KBase to Assemble and Annotate Prokaryotic Genomes.

Curr Protoc Microbiol 2017 08 11;46:1E.13.1-1E.13.18. Epub 2017 Aug 11.

Department of Crop and Soil Sciences, Washington State University, Pullman, Washington.

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http://dx.doi.org/10.1002/cpmc.37DOI Listing
August 2017

The 2015 Bioinformatics Open Source Conference (BOSC 2015).

PLoS Comput Biol 2016 Feb 25;12(2):e1004691. Epub 2016 Feb 25.

Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4767331PMC
February 2016

The Bioinformatics Open Source Conference (BOSC) 2013.

Bioinformatics 2015 Jan 14;31(2):299-300. Epub 2014 Jul 14.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, MS 972R525, Berkeley, CA 94720, USA, Information and Computational Sciences, The James Hutton Institute, Dundee DD2 5DA, UK, Bioinformatics Core, Harvard School of Public Health, Boston, MA 02115, USA, The Computational Biology Institute, George Washington University, Washington, DC 20052, USA, Bioinformatics Department, Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland and National Evolutionary Synthesis Center (NESCent), Durham, NC 27705, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287938PMC
January 2015

Apollo: a community resource for genome annotation editing.

Bioinformatics 2009 Jul 13;25(14):1836-7. Epub 2009 May 13.

Berkeley Bioinformatics Open Source Projects, Lawrence Berkeley National Laboratory, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705230PMC
July 2009

Using Apollo to browse and edit genome annotations.

Curr Protoc Bioinformatics 2006 Jan;Chapter 9:Unit 9.5

University of California, Berkeley, California, USA.

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http://dx.doi.org/10.1002/0471250953.bi0905s12DOI Listing
January 2006