Noah Zaitlen

Noah Zaitlen

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Noah Zaitlen

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Adjusting for Principal Components of Molecular Phenotypes Induces Replicating False Positives.

Genetics 2019 04 28;211(4):1179-1189. Epub 2019 Jan 28.

Department of Medicine, University of California San Francisco, 94158 California

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http://dx.doi.org/10.1534/genetics.118.301768DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456307PMC
April 2019

Reverse GWAS: Using genetics to identify and model phenotypic subtypes.

PLoS Genet 2019 04 5;15(4):e1008009. Epub 2019 Apr 5.

Department of Medicine, UCSF, San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1008009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6469799PMC
April 2019

Estimating cross-population genetic correlations of causal effect sizes.

Genet Epidemiol 2019 03 25;43(2):180-188. Epub 2018 Nov 25.

Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts.

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http://dx.doi.org/10.1002/gepi.22173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6375794PMC
March 2019

Tracing cellular heterogeneity in pooled genetic screens via multi-level barcoding.

BMC Genomics 2019 Feb 6;20(1):107. Epub 2019 Feb 6.

Department of Microbiology and Immunology, UCSF Diabetes Center, University of California, San Francisco, San Francisco, CA, 94143, USA.

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http://dx.doi.org/10.1186/s12864-019-5480-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6364396PMC
February 2019

An evolutionary compass for detecting signals of polygenic selection and mutational bias.

Evol Lett 2019 Feb 25;3(1):69-79. Epub 2019 Jan 25.

Department of Medicine University of California San Francisco CA.

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http://dx.doi.org/10.1002/evl3.97DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6369964PMC
February 2019

An Association Mapping Framework To Account for Potential Sex Difference in Genetic Architectures.

Genetics 2018 07 11;209(3):685-698. Epub 2018 May 11.

Department of Medicine, Seoul National University College of Medicine, Seoul 03080, Republic of Korea

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http://dx.doi.org/10.1534/genetics.117.300501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028251PMC
July 2018

Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.

Am J Psychiatry 2018 06 2;175(6):545-554. Epub 2018 Mar 2.

From the Virginia Institute for Psychiatric and Behavioral Genetics and the Department of Psychiatry, Virginia Commonwealth University, Richmond, Va.; the Wellcome Trust Sanger Institute, Cambridge, U.K.; the European Bioinformatics Institute (EMBL-EBI), Cambridge, U.K.; the Department of Medicine, University of California, San Francisco; the State University of New York Downstate Medical Center, Brooklyn, N.Y.; and the Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles.

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http://dx.doi.org/10.1176/appi.ajp.2017.17060621DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5988935PMC
June 2018

An ancestry-based approach for detecting interactions.

Genet Epidemiol 2018 02 8;42(1):49-63. Epub 2017 Nov 8.

Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1002/gepi.22087DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065511PMC
February 2018

Dual gene activation and knockout screen reveals directional dependencies in genetic networks.

Nat Biotechnol 2018 02 15;36(2):170-178. Epub 2018 Jan 15.

Department of Microbiology and Immunology, University of California San Francisco Diabetes Center, WM Keck Center for Noncoding RNAs, University of California, San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1038/nbt.4062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072461PMC
February 2018

Covariate selection for association screening in multiphenotype genetic studies.

Nat Genet 2017 Dec 16;49(12):1789-1795. Epub 2017 Oct 16.

Department of Medicine, University of California, San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1038/ng.3975DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5797835PMC
December 2017

CRISPR-Cas9-mediated functional dissection of 3'-UTRs.

Nucleic Acids Res 2017 Oct;45(18):10800-10810

Lung Biology Center, Department of Medicine, University of California San Francisco, 4th St, San Francisco, CA 94158, USA.

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http://dx.doi.org/10.1093/nar/gkx675DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737544PMC
October 2017

Heritable natural variation of an anxiety-like behavior in larval zebrafish.

J Neurogenet 2017 09 5;31(3):138-148. Epub 2017 Jul 5.

a Department of Bioengineering and Therapeutic Sciences, Programs in Human Genetics and Biological Sciences, Wheeler Center for the Neurobiology of Addiction , University of California , San Francisco , CA , USA.

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http://dx.doi.org/10.1080/01677063.2017.1343827DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051355PMC
September 2017

GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data.

Bioinformatics 2017 Jun;33(12):1870-1872

Computer Science Department, University of California Los Angeles, Los Angeles, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870777PMC
June 2017

Cis-eQTL-based trans-ethnic meta-analysis reveals novel genes associated with breast cancer risk.

PLoS Genet 2017 Mar 31;13(3):e1006690. Epub 2017 Mar 31.

Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006690DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391966PMC
March 2017

Genetic Mechanisms Leading to Sex Differences Across Common Diseases and Anthropometric Traits.

Genetics 2017 02 14;205(2):979-992. Epub 2016 Dec 14.

Department of Psychiatry and Institute for Human Genetics, University of California, San Francisco, California 94143

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http://www.genetics.org/content/early/2016/12/12/genetics.11
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http://dx.doi.org/10.1534/genetics.116.193623DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289864PMC
February 2017

Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation.

Nat Methods 2017 02;14(3):218-219

Department of Computer Science, University of California, Los Angeles, Los Angeles, California, USA.

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http://dx.doi.org/10.1038/nmeth.4190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5548185PMC
February 2017

Mixed Model Association with Family-Biased Case-Control Ascertainment.

Am J Hum Genet 2017 Jan 22;100(1):31-39. Epub 2016 Dec 22.

Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.11.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5223022PMC
January 2017

Pleiotropic Mechanisms Indicated for Sex Differences in Autism.

PLoS Genet 2016 11 15;12(11):e1006425. Epub 2016 Nov 15.

Department of Psychiatry and Institute for Human Genetics, University of California, San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5147776PMC
November 2016

Local Joint Testing Improves Power and Identifies Hidden Heritability in Association Studies.

Genetics 2016 07 6;203(3):1105-16. Epub 2016 May 6.

Department of Medicine, University of California, San Francisco, California 94158.

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http://dx.doi.org/10.1534/genetics.116.188292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937483PMC
July 2016

Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants.

Genome Res 2016 07 18;26(7):863-73. Epub 2016 May 18.

Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California 94143, USA; Institute for Human Genetics, University of California, San Francisco, San Francisco, California 94143, USA; Institute for Quantitative Biosciences (QB3), University of California, San Francisco, San Francisco, California 94143, USA;

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http://dx.doi.org/10.1101/gr.202440.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937562PMC
July 2016

Transethnic Genetic-Correlation Estimates from Summary Statistics.

Am J Hum Genet 2016 07 16;99(1):76-88. Epub 2016 Jun 16.

Department of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00029297163013
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http://dx.doi.org/10.1016/j.ajhg.2016.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005434PMC
July 2016

A Novel Test for Detecting SNP-SNP Interactions in Case-Only Trio Studies.

Genetics 2016 Apr 10;202(4):1289-97. Epub 2016 Feb 10.

Department of Medicine, University of California, San Francisco, California 94158.

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http://dx.doi.org/10.1534/genetics.115.179846DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905548PMC
April 2016

Massively Parallel Identification of Regulatory Variants in Asthma.

Ann Am Thorac Soc 2016 Mar;13 Suppl 1:S104

University of California, San Francisco, San Francisco, California.

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http://dx.doi.org/10.1513/AnnalsATS.201508-523MGDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015739PMC
March 2016

Multiple breast cancer risk variants are associated with differential transcript isoform expression in tumors.

Hum Mol Genet 2015 Dec 15;24(25):7421-31. Epub 2015 Oct 15.

Department of Medicine, Institute for Human Genetics, Helen Diller Family Comprehensive Cancer Center and.

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http://dx.doi.org/10.1093/hmg/ddv432DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664170PMC
December 2015

Genetic and socioeconomic study of mate choice in Latinos reveals novel assortment patterns.

Proc Natl Acad Sci U S A 2015 Nov 19;112(44):13621-6. Epub 2015 Oct 19.

Department of Medicine, University of California, San Francisco, CA 94143;

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http://dx.doi.org/10.1073/pnas.1501741112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4640764PMC
November 2015

Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores.

Am J Hum Genet 2015 Oct;97(4):576-92

Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Program in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA. Electronic address:

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http://biorxiv.org/content/biorxiv/early/2015/03/01/015859.f
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http://linkinghub.elsevier.com/retrieve/pii/S000292971500365
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http://dx.doi.org/10.1016/j.ajhg.2015.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596916PMC
October 2015

Adapt-Mix: learning local genetic correlation structure improves summary statistics-based analyses.

Bioinformatics 2015 Jun;31(12):i181-9

Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, Department of Computer Science, University of California Berkeley, Berkeley and Department of Medicine, University of California San Francisco, San Francisco, CA, USA Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, Department of Computer Science, University of California Berkeley, Berkeley and Department of Medicine, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv230DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4553832PMC
June 2015

Mixed model with correction for case-control ascertainment increases association power.

Am J Hum Genet 2015 May 16;96(5):720-30. Epub 2015 Apr 16.

Department of Biostatistics, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA; Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2015.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570278PMC
May 2015

Genetic and environmental components of family history in type 2 diabetes.

Hum Genet 2015 Feb 30;134(2):259-67. Epub 2014 Dec 30.

Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, 680 N Lake Shore, Suite 1400, Chicago, IL, 60611, USA,

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http://dx.doi.org/10.1007/s00439-014-1519-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4293229PMC
February 2015

Variation in predictive ability of common genetic variants by established strata: the example of breast cancer and age.

Epidemiology 2015 Jan;26(1):51-8

From the aProgram in Genetic Epidemiology and Statistical Genetics, Harvard School of Public Health, Boston, MA; bDepartment of Medicine, University of California San Francisco, San Francisco, CA; and cDepartment of Biostatistics, Harvard School of Public Health, Boston, MA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5082110PMC
http://dx.doi.org/10.1097/EDE.0000000000000195DOI Listing
January 2015

Fast and accurate imputation of summary statistics enhances evidence of functional enrichment.

Bioinformatics 2014 Oct 1;30(20):2906-14. Epub 2014 Jul 1.

Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, 90024, Bioinformatics Interdepartmental Program, University of California Los Angeles, Los Angeles, 90024, Department of Medicine, Lung Biology Center, University of California San Francisco, San Francisco, 94143, Program in Genetic Epidemiology and Statistical Genetics, Harvard School of Public Health, Boston, 02115, Departments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, MA, 02115, Program in Medical and Population Genetics, Broad Institute, Cambridge, MA, 02142, Department of Genetics Harvard Medical School, Boston, MA, 02115 and Division of Population Health Sciences and Education, St George's, University of London, UK Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, 90024, Bioinformatics Interdepartmental Program, University of California Los Angeles, Los Angeles, 90024, Department of Medicine, Lung Biology Center, University of California San Francisco, San Francisco, 94143, Program in Genetic Epidemiology and Statistical Genetics, Harvard School of Public Health, Boston, 02115, Departments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, MA, 02115, Program in Medical and Population Genetics, Broad Institute, Cambridge, MA, 02142, Department of Genetics Harvard Medical School, Boston, MA, 02115 and Division of Population Health Sciences and Education, St George's, University of London, UK Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, 90024, Bioinformatics Interdepartmental Program, University of California Los Angeles, Los Angeles, 90024, Department of Medicine, Lung Biology Center, University of California San Francisco, San Francisco, 94143, Program in Genetic Epidemiology and Statistical Genetics, Har

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http://dx.doi.org/10.1093/bioinformatics/btu416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184260PMC
October 2014

Intersection of population variation and autoimmunity genetics in human T cell activation.

Science 2014 Sep;345(6202):1254665

Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA 02142, USA. Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1126/science.1254665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751028PMC
September 2014

Quantifying missing heritability at known GWAS loci.

PLoS Genet 2013 26;9(12):e1003993. Epub 2013 Dec 26.

Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, United States of America ; Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, United States of America ; Medical and Population Genetics Program, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003993DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873246PMC
August 2014

Massively parallel functional annotation of 3' untranslated regions.

Nat Biotechnol 2014 Apr 16;32(4):387-91. Epub 2014 Mar 16.

Lung Biology Center, University of California San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1038/nbt.2851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3981918PMC
April 2014

Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.

Hum Mol Genet 2014 Feb 20;23(3):796-809. Epub 2013 Sep 20.

Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.

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http://dx.doi.org/10.1093/hmg/ddt462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3888262PMC
February 2014

Advantages and pitfalls in the application of mixed-model association methods.

Nat Genet 2014 Feb;46(2):100-6

1] Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, USA. [2] Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, USA. [3] Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA. [4].

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http://dx.doi.org/10.1038/ng.2876DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989144PMC
February 2014

A nonparametric test to detect quantitative trait loci where the phenotypic distribution differs by genotypes.

Genet Epidemiol 2013 May 19;37(4):323-33. Epub 2013 Mar 19.

Department of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA.

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http://dx.doi.org/10.1002/gepi.21716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4088942PMC
May 2013

Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits.

PLoS Genet 2013 May 30;9(5):e1003520. Epub 2013 May 30.

Department of Medicine, Lung Biology Center, University of California San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1371/journal.pgen.1003520DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3667752PMC
May 2013

Heritability in the genome-wide association era.

Hum Genet 2012 Oct 21;131(10):1655-64. Epub 2012 Jul 21.

Department of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA.

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http://link.springer.com/10.1007/s00439-012-1199-6
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http://dx.doi.org/10.1007/s00439-012-1199-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432754PMC
October 2012

Genotyping common and rare variation using overlapping pool sequencing.

BMC Bioinformatics 2011 28;12 Suppl 6:S2. Epub 2011 Jul 28.

Department of Computer Science, University of California, Los Angeles, CA 90095, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-12-S6-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194190PMC
December 2011

Combining effects from rare and common genetic variants in an exome-wide association study of sequence data.

BMC Proc 2011 Nov 29;5 Suppl 9:S44. Epub 2011 Nov 29.

1Department of Epidemiology, Harvard School of Public Health, 677 Huntington Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1186/1753-6561-5-S9-S44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287881PMC
November 2011

Accurate estimation of expression levels of homologous genes in RNA-seq experiments.

J Comput Biol 2011 Mar;18(3):459-68

Departments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, Massachusetts, USA.

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http://www.liebertpub.com/doi/10.1089/cmb.2010.0259
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http://dx.doi.org/10.1089/cmb.2010.0259DOI Listing
March 2011

Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms.

Artif Intell Med 2010 Nov 21;50(3):193-201. Epub 2010 Jul 21.

Faculty of Informatics, Universidad Politécnica de Madrid, R. 3306, Campus de Montegancedo, 28660 Boadilla del Monte, Madrid, Spain.

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http://dx.doi.org/10.1016/j.artmed.2010.05.010DOI Listing
November 2010

Imputation aware meta-analysis of genome-wide association studies.

Genet Epidemiol 2010 Sep;34(6):537-42

Bioinformatics Program, University of California, San Diego, California, USA.

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http://dx.doi.org/10.1002/gepi.20507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102182PMC
September 2010

New approaches to population stratification in genome-wide association studies.

Nat Rev Genet 2010 Jul;11(7):459-63

Program in Medical and Population Genetics, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nrg2813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2975875PMC
July 2010

Variance component model to account for sample structure in genome-wide association studies.

Nat Genet 2010 Apr 7;42(4):348-54. Epub 2010 Mar 7.

Center for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA.

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http://www.nature.com/articles/ng.548
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http://dx.doi.org/10.1038/ng.548DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3092069PMC
April 2010

EMINIM: an adaptive and memory-efficient algorithm for genotype imputation.

J Comput Biol 2010 Mar;17(3):547-60

Biostatistics Department, University of Michigan, Ann Arbor, Ann Arbor, Michigan, USA.

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http://www.liebertpub.com/doi/10.1089/cmb.2009.0199
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http://dx.doi.org/10.1089/cmb.2009.0199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3198882PMC
March 2010

Linkage effects and analysis of finite sample errors in the HapMap.

Hum Hered 2009 9;68(2):73-86. Epub 2009 Apr 9.

Bioinformatics Program, University of California, San Diego, Calif., USA.

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http://dx.doi.org/10.1159/000212500DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874737PMC
July 2009

Shift-invariant adaptive double threading: learning MHC II-peptide binding.

J Comput Biol 2008 Sep;15(7):927-42

Bioinformatics Program, University of California, San Diego, La Jolla, California, USA.

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http://www.liebertpub.com/doi/10.1089/cmb.2007.0183
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http://dx.doi.org/10.1089/cmb.2007.0183DOI Listing
September 2008

Efficient control of population structure in model organism association mapping.

Genetics 2008 Mar;178(3):1709-23

Department of Computer Science, University of California, Los Angeles, California 90095-1596, USA.

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http://dx.doi.org/10.1534/genetics.107.080101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2278096PMC
March 2008

Leveraging the HapMap correlation structure in association studies.

Am J Hum Genet 2007 Apr 2;80(4):683-91. Epub 2007 Mar 2.

Bioinformatics Program, University of California-San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1086/513109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852710PMC
April 2007

Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP.

Genome Res 2005 Nov;15(11):1594-600

Bioinformatics Program, University of California, San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1101/gr.4297805DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1310648PMC
November 2005