Nizar Batada

Nizar Batada

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Nizar Batada

Nizar Batada

Publications by authors named "Nizar Batada"

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SET8 localization to chromatin flanking DNA damage is dependent on RNF168 ubiquitin ligase.

Cell Cycle 2020 Jan 24;19(1):15-23. Epub 2019 Nov 24.

Department of Medical Biophysics, University of Toronto, Toronto, Canada.

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http://dx.doi.org/10.1080/15384101.2019.1690231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6927710PMC
January 2020

Is there a causal link between PTEN deficient tumors and immunosuppressive tumor microenvironment?

J Transl Med 2020 Jan 30;18(1):45. Epub 2020 Jan 30.

Centre for Genomic and Experimental Medicine, MRC Institute of Genetics & Molecular Medicine, University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1186/s12967-020-02219-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6993356PMC
January 2020

Depletion of somatic mutations in splicing-associated sequences in cancer genomes.

Genome Biol 2017 11 7;18(1):213. Epub 2017 Nov 7.

Institute for Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK.

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http://dx.doi.org/10.1186/s13059-017-1337-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678748PMC
November 2017

Human somatic cells deficient for RAD52 are impaired for viral integration and compromised for most aspects of homology-directed repair.

DNA Repair (Amst) 2017 07 10;55:64-75. Epub 2017 May 10.

BMBB Department, University of Minnesota Medical School, 6-155 Jackson Hall, 321 Church St., SE., Minneapolis, MN 55455, United States. Electronic address:

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http://dx.doi.org/10.1016/j.dnarep.2017.04.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5515278PMC
July 2017

SET8 methyltransferase activity during the DNA double-strand break response is required for recruitment of 53BP1.

EMBO Rep 2014 Nov 24;15(11):1163-74. Epub 2014 Sep 24.

Ontario Institute for Cancer Research, Toronto, ON, Canada Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada

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http://dx.doi.org/10.15252/embr.201439434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253490PMC
November 2014

Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors.

Cell Regen (Lond) 2014 7;3(1). Epub 2014 Feb 7.

Ontario Institute for Cancer Research, Toronto, Ontario M4G 0A3 Canada ; Department of Medical Biophysics, University of Toronto, Toronto, ON M5G 2 M9 Canada.

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http://dx.doi.org/10.1186/2045-9769-3-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4230737PMC
November 2014

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells.

Stem Cell Reports 2014 Jan 2;2(1):44-51. Epub 2014 Jan 2.

Ontario Institute for Cancer Research, 101 College Street, Toronto, Canada M5G 0A3 ; Department of Medical Biophysics, University of Toronto, Toronto, Canada M5G 2M9.

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http://dx.doi.org/10.1016/j.stemcr.2013.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916753PMC
January 2014

Frequent mutations in TP53 and CDKN2A found by next-generation sequencing of head and neck cancer cell lines.

Arch Otolaryngol Head Neck Surg 2012 Aug;138(8):732-9

Departmentof Otolaryngology–Head and Neck Surgery, VictoriaHospital, London Health Science Centre, Room B3-431A, 800 Commissioners Rd E, London,ONN6A 5W9,Canada

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http://dx.doi.org/10.1001/archoto.2012.1558DOI Listing
August 2012

The impact of the nucleosome code on protein-coding sequence evolution in yeast.

PLoS Genet 2008 Nov 7;4(11):e1000250. Epub 2008 Nov 7.

Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.

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http://dx.plos.org/10.1371/journal.pgen.1000250
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http://dx.doi.org/10.1371/journal.pgen.1000250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570795PMC
November 2008

Chromatin remodelling is a major source of coexpression of linked genes in yeast.

Trends Genet 2007 Oct 5;23(10):480-4. Epub 2007 Sep 5.

Department of Biology & Biochemistry, University of Bath, Bath, BA2 7AY, UK.

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http://dx.doi.org/10.1016/j.tig.2007.08.003DOI Listing
October 2007

Evolution of chromosome organization driven by selection for reduced gene expression noise.

Nat Genet 2007 Aug;39(8):945-9

Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, UK.

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http://dx.doi.org/10.1038/ng2071DOI Listing
August 2007

Evolutionary and physiological importance of hub proteins.

PLoS Comput Biol 2006 Jul 5;2(7):e88. Epub 2006 Jun 5.

Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Canada.

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http://dx.doi.org/10.1371/journal.pcbi.0020088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1500817PMC
July 2006

Spatial regulation and the rate of signal transduction activation.

PLoS Comput Biol 2006 May 12;2(5):e44. Epub 2006 May 12.

Program in Biophysics, Stanford University, Stanford, California, USA.

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https://dx.plos.org/10.1371/journal.pcbi.0020044
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http://dx.doi.org/10.1371/journal.pcbi.0020044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1458967PMC
May 2006

Spines and neurite branches function as geometric attractors that enhance protein kinase C action.

J Cell Biol 2005 Sep;170(7):1147-58

Department of Molecular Pharmacology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://jcb.rupress.org/content/170/7/1147.full.pdf
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http://www.jcb.org/lookup/doi/10.1083/jcb.200503118
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http://dx.doi.org/10.1083/jcb.200503118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2171530PMC
September 2005

Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center.

Proc Natl Acad Sci U S A 2004 Dec 1;101(50):17361-4. Epub 2004 Dec 1.

Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.

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http://dx.doi.org/10.1073/pnas.0408168101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC536049PMC
December 2004

CNplot: visualizing pre-clustered networks.

Authors:
Nizar N Batada

Bioinformatics 2004 Jun 10;20(9):1455-6. Epub 2004 Feb 10.

Program in Biophysics, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth080DOI Listing
June 2004

Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized.

Proc Natl Acad Sci U S A 2004 Apr 19;101(17):6445-9. Epub 2004 Apr 19.

Department of Structural Biology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.0401314101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC404064PMC
April 2004