Nisha Rajagopal

Nisha Rajagopal

UNVERIFIED PROFILE

Are you Nisha Rajagopal?   Register this Author

Register author
Nisha Rajagopal

Nisha Rajagopal

Publications by authors named "Nisha Rajagopal"

Are you Nisha Rajagopal?   Register this Author

13Publications

687Reads

18Profile Views

A synergistic DNA logic predicts genome-wide chromatin accessibility.

Genome Res 2016 10 25;26(10):1430-1440. Epub 2016 Jul 25.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.199778.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052050PMC
October 2016

High-throughput mapping of regulatory DNA.

Nat Biotechnol 2016 Feb 25;34(2):167-74. Epub 2016 Jan 25.

Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt.3468DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5108523PMC
February 2016

Human body epigenome maps reveal noncanonical DNA methylation variation.

Nature 2015 Jul 1;523(7559):212-6. Epub 2015 Jun 1.

1] Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA [2] Howard Hughes Medical Institute, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, California 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature14465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499021PMC
July 2015

Integrative analysis of 111 reference human epigenomes.

Nature 2015 Feb;518(7539):317-30

1] Computer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology, 32 Vassar St, Cambridge, Massachusetts 02139, USA. [2] The Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, Massachusetts 02142, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature14248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4530010PMC
February 2015

Chromatin architecture reorganization during stem cell differentiation.

Nature 2015 Feb;518(7539):331-6

1] Ludwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, California 92093-0653, USA [2] University of California, San Diego School of Medicine, Department of Cellular and Molecular Medicine, Institute of Genomic Medicine, 9500 Gilman Drive, La Jolla, California 92093-0653, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/nature14222
Publisher Site
http://dx.doi.org/10.1038/nature14222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4515363PMC
February 2015

Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies.

G3 (Bethesda) 2014 Aug 12;4(11):2051-63. Epub 2014 Aug 12.

Ludwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, California 92093-0653 Department of Cellular and Molecular Medicine, Institute of Genomic Medicine, and Moores Cancer Center, University of California, San Diego School of Medicine, La Jolla, California 92093

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1534/g3.114.013565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4232531PMC
August 2014

RFECS: a random-forest based algorithm for enhancer identification from chromatin state.

PLoS Comput Biol 2013 14;9(3):e1002968. Epub 2013 Mar 14.

Ludwig Institute for Cancer Research, University of California at San Diego, La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1002968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3597546PMC
November 2013

Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues.

Nat Genet 2013 Oct 1;45(10):1198-206. Epub 2013 Sep 1.

Ludwig Institute for Cancer Research, La Jolla, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ng.2746DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4095776PMC
October 2013