Publications by authors named "Niema Moshiri"

5Publications

ViralMSA: Massively scalable reference-guided multiple sequence alignment of viral genomes.

Authors:
Niema Moshiri

Bioinformatics 2020 Aug 19. Epub 2020 Aug 19.

Department of Computer Science & Engineering, UC San Diego, La Jolla, USA.

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http://dx.doi.org/10.1093/bioinformatics/btaa743DOI Listing
August 2020

TreeCluster: Clustering biological sequences using phylogenetic trees.

PLoS One 2019 22;14(8):e0221068. Epub 2019 Aug 22.

Department of Electrical and Computer Engineering, UC San Diego, La Jolla, CA 92093, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0221068PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6705769PMC
March 2020

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

PLoS Comput Biol 2019 07 25;15(7):e1007007. Epub 2019 Jul 25.

Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1007007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6657818PMC
July 2019

A Two-State Model of Tree Evolution and Its Applications to Alu Retrotransposition.

Syst Biol 2018 May;67(3):475-489

Department of Electrical and Computer Engineering, UC San Diego, 9500 Gilman Dr., La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1093/sysbio/syx088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5920319PMC
May 2018