Niek de Vries

Niek de Vries

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Niek de Vries

Publications by authors named "Niek de Vries"

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Non-response to rituximab therapy in rheumatoid arthritis is associated with incomplete disruption of the B cell receptor repertoire.

Ann Rheum Dis 2019 Oct 19;78(10):1339-1345. Epub 2019 Jun 19.

Amsterdam Rheumatology and Immunology Center (ARC) | Department of Clinical Immunology and Rheumatology, Amsterdam UMC, location AMC, University of Amsterdam, Amsterdam, The Netherlands

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http://dx.doi.org/10.1136/annrheumdis-2018-214898DOI Listing
October 2019

Identification and Characterization of Circulating Naïve CD4+ and CD8+ T Cells Recognizing Nickel.

Front Immunol 2019 12;10:1331. Epub 2019 Jun 12.

Inflammation Chimiokines et Immunopathologie, INSERM, Fac. de Pharmacie-Univ. Paris-Sud, Université Paris-Saclay, Châtenay-Malabry, France.

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http://dx.doi.org/10.3389/fimmu.2019.01331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582854PMC
June 2019

Effects of B-cell directed therapy on the preclinical stage of rheumatoid arthritis: the PRAIRI study.

Ann Rheum Dis 2019 Feb 1;78(2):179-185. Epub 2018 Dec 1.

Department of Clinical immunology and Rheumatology, Amsterdam Rheumatology and Immunology Center, Amsterdam University Medical Centre, Amsterdam, The Netherlands

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http://ard.bmj.com/lookup/doi/10.1136/annrheumdis-2017-21276
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http://dx.doi.org/10.1136/annrheumdis-2017-212763DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6352407PMC
February 2019

Human Fetal TNF-α-Cytokine-Producing CD4 Effector Memory T Cells Promote Intestinal Development and Mediate Inflammation Early in Life.

Immunity 2019 02 12;50(2):462-476.e8. Epub 2019 Feb 12.

Department of Experimental Immunology, Amsterdam Infection & Immunity Institute, Amsterdam University Medical Center, University of Amsterdam, Amsterdam 1105 AZ, the Netherlands; Department of Pediatrics, Emma Children's Hospital, Amsterdam University Medical Center, University of Amsterdam, Amsterdam 1105 AZ, the Netherlands; Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg 20251, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613183053
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http://dx.doi.org/10.1016/j.immuni.2018.12.010DOI Listing
February 2019

In Rheumatoid Arthritis, Synovitis at Different Inflammatory Sites Is Dominated by Shared but Patient-Specific T Cell Clones.

J Immunol 2018 07 11;201(2):417-422. Epub 2018 Jun 11.

Department of Clinical Immunology and Rheumatology, Amsterdam Rheumatology and Immunology Center, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, the Netherlands;

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http://dx.doi.org/10.4049/jimmunol.1800421DOI Listing
July 2018

IgG4-Associated Cholangitis in Patients Resected for Presumed Perihilar Cholangiocarcinoma: a 30-Year Tertiary Care Experience.

Am J Gastroenterol 2018 05 16;113(5):765-772. Epub 2018 Mar 16.

Department of Surgery, Academic Medical Center, Amsterdam, The Netherlands. Department of Gastroenterology & Hepatology and Tytgat institute for Liver and intestinal Research, Academic Medical Center, Amsterdam, The Netherlands. Department of Clinical immunology and Rheumatology, Amsterdam Rheumatology and immunology Center, & Laboratory of Experimental Medicine, Academic Medical Center, Amsterdam, The Netherlands. Department of Pathology, Academic Medical Center, Amsterdam, The Netherlands. These authors contributed equally: Eva Roos, Lowiek M. Hubers.

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http://dx.doi.org/10.1038/s41395-018-0036-5DOI Listing
May 2018

MiR-146a G/C rs2910164 variation in South African Indian and Caucasian patients with psoriatic arthritis.

BMC Med Genet 2018 03 27;19(1):48. Epub 2018 Mar 27.

School of Laboratory Medicine and Medical Sciences, Discipline of Medical Biochemistry and Chemical Pathology, University of KwaZulu-Natal, George Campbell Building - South Entrance, 3rd Floor, King George V Avenue, Howard College Campus, Durban, 4001, South Africa.

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http://dx.doi.org/10.1186/s12881-018-0565-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870474PMC
March 2018

Computational Model Reveals Limited Correlation between Germinal Center B-Cell Subclone Abundancy and Affinity: Implications for Repertoire Sequencing.

Front Immunol 2017 6;8:221. Epub 2017 Mar 6.

Biosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands; Bioinformatics Laboratory, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.

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http://dx.doi.org/10.3389/fimmu.2017.00221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5337809PMC
March 2017

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Nat Commun 2016 10 10;7:13205. Epub 2016 Oct 10.

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http://dx.doi.org/10.1038/ncomms13205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5062501PMC
October 2016

Reply.

Arthritis Rheumatol 2016 08;68(8):2053-4

Karolinska University Hospital Solna and Karolinska Institute, Stockholm, Sweden.

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http://dx.doi.org/10.1002/art.39660DOI Listing
August 2016

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Nat Commun 2016 08 23;7:12460. Epub 2016 Aug 23.

Sage Bionetworks, Seattle, Washington 98115, USA.

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http://dx.doi.org/10.1038/ncomms12460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996969PMC
August 2016

Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction.

PLoS One 2015 30;10(10):e0140815. Epub 2015 Oct 30.

Department of Clinical Immunology and Rheumatology, Laboratory for Experimental Immunology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140815PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627806PMC
June 2016

Psoriatic arthritis: An assessment of clinical, biochemical and radiological features in a single-centre South African cohort.

S Afr Med J 2016 May 5;106(6). Epub 2016 May 5.

Department of Internal Medicine, Prince Mshiyeni Memorial Hospital and School of Clinical Medicine, College of Health Sciences, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa; Division of Clinical Immunology and Rheumatology, Academic Medical Centre, University of Amsterdam, Netherlands.

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http://dx.doi.org/10.7196/SAMJ.2016.v106i6.10347DOI Listing
May 2016

TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits.

PLoS One 2015 7;10(4):e0122271. Epub 2015 Apr 7.

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122271PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4388675PMC
March 2016

New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis.

Authors:
S Hong Lee Enda M Byrne Christina M Hultman Anna Kähler Anna A E Vinkhuyzen Stephan Ripke Ole A Andreassen Thomas Frisell Alexander Gusev Xinli Hu Robert Karlsson Vasilis X Mantzioris John J McGrath Divya Mehta Eli A Stahl Qiongyi Zhao Kenneth S Kendler Patrick F Sullivan Alkes L Price Michael O'Donovan Yukinori Okada Bryan J Mowry Soumya Raychaudhuri Naomi R Wray William Byerley Wiepke Cahn Rita M Cantor Sven Cichon Paul Cormican David Curtis Srdjan Djurovic Valentina Escott-Price Pablo V Gejman Lyudmila Georgieva Ina Giegling Thomas F Hansen Andrés Ingason Yunjung Kim Bettina Konte Phil H Lee Andrew McIntosh Andrew McQuillin Derek W Morris Markus M Nöthen Colm O'Dushlaine Ann Olincy Line Olsen Carlos N Pato Michele T Pato Benjamin S Pickard Danielle Posthuma Henrik B Rasmussen Marcella Rietschel Dan Rujescu Thomas G Schulze Jeremy M Silverman Srinivasa Thirumalai Thomas Werge Ingrid Agartz Farooq Amin Maria H Azevedo Nicholas Bass Donald W Black Douglas H R Blackwood Richard Bruggeman Nancy G Buccola Khalid Choudhury Robert C Cloninger Aiden Corvin Nicholas Craddock Mark J Daly Susmita Datta Gary J Donohoe Jubao Duan Frank Dudbridge Ayman Fanous Robert Freedman Nelson B Freimer Marion Friedl Michael Gill Hugh Gurling Lieuwe De Haan Marian L Hamshere Annette M Hartmann Peter A Holmans René S Kahn Matthew C Keller Elaine Kenny George K Kirov Lydia Krabbendam Robert Krasucki Jacob Lawrence Todd Lencz Douglas F Levinson Jeffrey A Lieberman Dan-Yu Lin Don H Linszen Patrik K E Magnusson Wolfgang Maier Anil K Malhotra Manuel Mattheisen Morten Mattingsdal Steven A McCarroll Helena Medeiros Ingrid Melle Vihra Milanova Inez Myin-Germeys Benjamin M Neale Roel A Ophoff Michael J Owen Jonathan Pimm Shaun M Purcell Vinay Puri Digby J Quested Lizzy Rossin Douglas Ruderfer Alan R Sanders Jianxin Shi Pamela Sklar David St Clair T Scott Stroup Jim Van Os Peter M Visscher Durk Wiersma Stanley Zammit S Louis Bridges Hyon K Choi Marieke J H Coenen Niek de Vries Philippe Dieud Jeffrey D Greenberg Tom W J Huizinga Leonid Padyukov Katherine A Siminovitch Paul P Tak Jane Worthington Philip L De Jager Joshua C Denny Peter K Gregersen Lars Klareskog Xavier Mariette Robert M Plenge Mart van Laar Piet van Riel

Int J Epidemiol 2015 Oct;44(5):1706-21

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http://dx.doi.org/10.1093/ije/dyv136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881824PMC
October 2015

IgG4-associated cholangitis: a comprehensive review.

Clin Rev Allergy Immunol 2015 Jun;48(2-3):198-206

Department of Gastroenterology and Hepatology and Tytgat Institute of Liver and Intestinal Research, Academic Medical Center, University of Amsterdam, Meibergdreef 9, room G4-216, 1105 AZ, Amsterdam, The Netherlands.

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http://link.springer.com/10.1007/s12016-014-8430-2
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http://dx.doi.org/10.1007/s12016-014-8430-2DOI Listing
June 2015

IgG4-associated cholangitis.

Dig Dis 2014 14;32(5):605-8. Epub 2014 Jul 14.

Department of Gastroenterology and Hepatology, Tytgat Institute for Liver and Intestinal Research, Academic Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1159/000360513DOI Listing
March 2015

Discovery of invariant T cells by next-generation sequencing of the human TCR α-chain repertoire.

J Immunol 2014 Nov 22;193(10):5338-44. Epub 2014 Oct 22.

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115; and Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584CL Utrecht, the Netherlands

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http://dx.doi.org/10.4049/jimmunol.1401380DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4225161PMC
November 2014

Integration of sequence data from a Consanguineous family with genetic data from an outbred population identifies PLB1 as a candidate rheumatoid arthritis risk gene.

PLoS One 2014 10;9(2):e87645. Epub 2014 Feb 10.

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America ; Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America ; Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0087645PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919745PMC
October 2014

[IgG4-related disease].

Ned Tijdschr Geneeskd 2013 ;157(46):A6476

Academisch Medisch Centrum, Amsterdam.

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July 2014

Genetics of rheumatoid arthritis contributes to biology and drug discovery.

Nature 2014 Feb 25;506(7488):376-81. Epub 2013 Dec 25.

1] Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA. [2] Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA. [3] Program in Medical and Population Genetics, Broad Institute, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature12873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944098PMC
February 2014

Pro-apoptotic protein Noxa regulates memory T cell population size and protects against lethal immunopathology.

J Immunol 2013 Feb 31;190(3):1180-91. Epub 2012 Dec 31.

Department of Experimental Immunology, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands.

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http://dx.doi.org/10.4049/jimmunol.1202304DOI Listing
February 2013

MicroRNAs--novel regulators of systemic lupus erythematosus pathogenesis.

Nat Rev Rheumatol 2012 Dec 16;8(12):701-9. Epub 2012 Oct 16.

Joint Molecular Rheumatology Laboratory of the Institute of Health Sciences and Shanghai Renji Hospital, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai Jiaotong University School of Medicine, 145 Shan Dong Middle Road, Shanghai 200001, China.

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http://dx.doi.org/10.1038/nrrheum.2012.142DOI Listing
December 2012

Memory CD4(+)CCR5(+) T cells are abundantly present in the gut of newborn infants to facilitate mother-to-child transmission of HIV-1.

Blood 2012 Nov 1;120(22):4383-90. Epub 2012 Oct 1.

Departments of Pediatric Hematology, Immunology and Infectious Diseases, Emma Children’s Hospital, Academic Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1182/blood-2012-06-437566DOI Listing
November 2012

A functional variant in microRNA-146a promoter modulates its expression and confers disease risk for systemic lupus erythematosus.

PLoS Genet 2011 Jun 30;7(6):e1002128. Epub 2011 Jun 30.

Joint Molecular Rheumatology Laboratory of the Institute of Health Sciences and Shanghai Renji Hospital, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai Jiaotong University School of Medicine, Shanghai, China.

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https://dx.plos.org/10.1371/journal.pgen.1002128
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http://dx.doi.org/10.1371/journal.pgen.1002128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128113PMC
June 2011

Human T-cell memory consists mainly of unexpanded clones.

Immunol Lett 2010 Sep 16;133(1):42-8. Epub 2010 Jul 16.

Department of Clinical Immunology and Rheumatology, AMC/University of Amsterdam, The Netherlands.

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http://dx.doi.org/10.1016/j.imlet.2010.06.011DOI Listing
September 2010

Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.

Nat Genet 2010 Jun 9;42(6):508-14. Epub 2010 May 9.

Division of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243840PMC
June 2010

['Rheumatoid arthritis' in a Surinamese man: leprosy].

Ned Tijdschr Geneeskd 2009 ;153:A246

Academisch Medisch Centrum/Universiteit van Amsterdam, Amsterdam, The Netherlands.

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November 2009

MicroRNA-146A contributes to abnormal activation of the type I interferon pathway in human lupus by targeting the key signaling proteins.

Arthritis Rheum 2009 Apr;60(4):1065-75

Joint Molecular Rheumatology Laboratory of the Institute of Health Sciences and Shanghai Renji Hospital, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, and Shanghai Jiaotong University School of Medicine, Shanghai, China.

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http://dx.doi.org/10.1002/art.24436DOI Listing
April 2009

Monitoring the T-cell receptor repertoire at single-clone resolution.

PLoS One 2006 Dec 20;1:e55. Epub 2006 Dec 20.

Division of Clinical Immunology and Rheumatology, Academic Medical Centre, University of Amsterdam, Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000055PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1762342PMC
December 2006

Female sex increases risk for rheumatoid arthritis only in individuals encoding low-risk HLA-DRB1 alleles.

Arthritis Rheum 2003 Jun;48(6):1762-3

Academic Medical Center/University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1002/art.11022DOI Listing
June 2003

Research in complex diseases.

Lancet 2002 Apr;359(9313):1243-5

Department of Rheumatology and Clinical Immunology, University Medical Centre, Utrecht, Netherlands.

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http://dx.doi.org/10.1016/S0140-6736(02)08223-5DOI Listing
April 2002