Nicole M Koropatkin

Carl R. Woese Institute for Genomic Biology (Microbiome Metabolic Engineering Theme), University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Animal Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Energy Biosciences Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Division of Nutritional Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Electronic address:

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August 2017

A polysaccharide utilization locus from enables conversion of recalcitrant chitin.

Authors:

Johan Larsbrink Yongtao Zhu Sampada S Kharade Kurt J Kwiatkowski Vincent G H Eijsink Nicole M Koropatkin Mark J McBride Phillip B Pope

Biotechnol Biofuels 2016 28;9:260. Epub 2016 Nov 28.

Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432 Ås, Norway.

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November 2016

Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus: ENZYME SYNERGY AND CRYSTAL STRUCTURE OF A β-MANNANASE.

Authors:

Viktoria Bågenholm Sumitha K Reddy Hanene Bouraoui Johan Morrill Evelina Kulcinskaja Constance M Bahr Oskar Aurelius Theresa Rogers Yao Xiao Derek T Logan Eric C Martens Nicole M Koropatkin Henrik Stålbrand

J Biol Chem 2017 Jan 21;292(1):229-243. Epub 2016 Nov 21.

From the Department of Biochemistry and Structural Biology, Lund University P. O. Box 124, S-221 00 Lund, Sweden and

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January 2017

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility.

Authors:

Mahesh S Desai Anna M Seekatz Nicole M Koropatkin Nobuhiko Kamada Christina A Hickey Mathis Wolter Nicholas A Pudlo Sho Kitamoto Nicolas Terrapon Arnaud Muller Vincent B Young Bernard Henrissat Paul Wilmes Thaddeus S Stappenbeck Gabriel Núñez Eric C Martens

Cell 2016 11;167(5):1339-1353.e21

University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address:

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November 2016

Corrigendum: Determining crystal structures through crowdsourcing and coursework.

Nat Commun 2016 10 25;7:13392. Epub 2016 Oct 25.

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October 2016

Determining crystal structures through crowdsourcing and coursework.

Nat Commun 2016 09 16;7:12549. Epub 2016 Sep 16.

Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan 48109, USA.

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September 2016

Lysozyme activity of the Ruminococcus champanellensis cellulosome.

Authors:

Sarah Moraïs Darrell W Cockburn Yonit Ben-David Nicole M Koropatkin Eric C Martens Sylvia H Duncan Harry J Flint Itzhak Mizrahi Edward A Bayer

Environ Microbiol 2016 12 7;18(12):5112-5122. Epub 2016 Sep 7.

Biomolecular Sciences Department, The Weizmann Institute of Science, Rehovot, Israel.

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December 2016

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease.

Authors:

Darrell W Cockburn Nicole M Koropatkin

J Mol Biol 2016 08 6;428(16):3230-3252. Epub 2016 Jul 6.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address:

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August 2016

A β-mannan utilization locus in Bacteroides ovatus involves a GH36 α-galactosidase active on galactomannans.

Authors:

Sumitha K Reddy Viktoria Bågenholm Nicholas A Pudlo Hanene Bouraoui Nicole M Koropatkin Eric C Martens Henrik Stålbrand

FEBS Lett 2016 07 28;590(14):2106-18. Epub 2016 Jun 28.

Department of Biochemistry and Structural Biology, Lund University, Sweden.

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July 2016

The Sus operon: a model system for starch uptake by the human gut Bacteroidetes.

Authors:

Matthew H Foley Darrell W Cockburn Nicole M Koropatkin

Cell Mol Life Sci 2016 07 2;73(14):2603-17. Epub 2016 May 2.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

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July 2016

Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.

Authors:

Alexandra S Tauzin Kurt J Kwiatkowski Nicole I Orlovsky Christopher J Smith A Louise Creagh Charles A Haynes Zdzislaw Wawrzak Harry Brumer Nicole M Koropatkin

mBio 2016 Apr 26;7(2):e02134-15. Epub 2016 Apr 26.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA

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April 2016

Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii.

Authors:

Xiaolei Ze Yonit Ben David Jenny A Laverde-Gomez Bareket Dassa Paul O Sheridan Sylvia H Duncan Petra Louis Bernard Henrissat Nathalie Juge Nicole M Koropatkin Edward A Bayer Harry J Flint

mBio 2015 Sep 29;6(5):e01058-15. Epub 2015 Sep 29.

Microbiology Group, Rowett Institute of Nutrition and Health, University of Aberdeen, Bucksburn, Aberdeen, Scotland, United Kingdom

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September 2015

Enzymatic profiling of cellulosomal enzymes from the human gut bacterium, Ruminococcus champanellensis, reveals a fine-tuned system for cohesin-dockerin recognition.

Authors:

Sarah Moraïs Yonit Ben David Lizi Bensoussan Sylvia H Duncan Nicole M Koropatkin Eric C Martens Harry J Flint Edward A Bayer

Environ Microbiol 2016 Feb 14;18(2):542-56. Epub 2015 Oct 14.

Department of Biological Chemistry, The Weizmann Institute of Science, Rehovot, Israel.

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February 2016

Outer membrane proteins related to SusC and SusD are not required for Cytophaga hutchinsonii cellulose utilization.

Authors:

Yongtao Zhu Kurt J Kwiatkowski Tengteng Yang Sampada S Kharade Constance M Bahr Nicole M Koropatkin Weifeng Liu Mark J McBride

Appl Microbiol Biotechnol 2015 Aug 7;99(15):6339-50. Epub 2015 Apr 7.

Department of Biological Sciences, University of Wisconsin-Milwaukee, P.O. Box 413, Milwaukee, WI, 53201, USA.

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August 2015

Ruminococcal cellulosome systems from rumen to human.

Authors:

Yonit Ben David Bareket Dassa Ilya Borovok Raphael Lamed Nicole M Koropatkin Eric C Martens Bryan A White Annick Bernalier-Donadille Sylvia H Duncan Harry J Flint Edward A Bayer Sarah Moraïs

Environ Microbiol 2015 Sep 7;17(9):3407-26. Epub 2015 May 7.

Department of Biological Chemistry, The Weizmann Institute of Science, Rehovot, Israel.

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September 2015

Superresolution imaging captures carbohydrate utilization dynamics in human gut symbionts.

Authors:

Krishanthi S Karunatilaka Elizabeth A Cameron Eric C Martens Nicole M Koropatkin Julie S Biteen

mBio 2014 Nov 11;5(6):e02172. Epub 2014 Nov 11.

Department of Chemistry, University of Michigan, Ann Arbor, Michigan, USA

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November 2014

Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.

Authors:

Darrell W Cockburn Nicole I Orlovsky Matthew H Foley Kurt J Kwiatkowski Constance M Bahr Mallory Maynard Borries Demeler Nicole M Koropatkin

Mol Microbiol 2015 Jan 19;95(2):209-30. Epub 2014 Dec 19.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

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January 2015

Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis.

Authors:

Elizabeth A Cameron Kurt J Kwiatkowski Byung-Hoo Lee Bruce R Hamaker Nicole M Koropatkin Eric C Martens

mBio 2014 Sep 9;5(5):e01441-14. Epub 2014 Sep 9.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA

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September 2014

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes.

Authors:

Johan Larsbrink Theresa E Rogers Glyn R Hemsworth Lauren S McKee Alexandra S Tauzin Oliver Spadiut Stefan Klinter Nicholas A Pudlo Karthik Urs Nicole M Koropatkin A Louise Creagh Charles A Haynes Amelia G Kelly Stefan Nilsson Cederholm Gideon J Davies Eric C Martens Harry Brumer

Nature 2014 Feb 19;506(7489):498-502. Epub 2014 Jan 19.

1] Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden [2] Michael Smith Laboratories and Department of Chemistry, University of British Columbia, 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada.

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February 2014

Dynamic responses of Bacteroides thetaiotaomicron during growth on glycan mixtures.

Authors:

Theresa E Rogers Nicholas A Pudlo Nicole M Koropatkin Joshua S K Bell Monica Moya Balasch Kevin Jasker Eric C Martens

Mol Microbiol 2013 Jun 5;88(5):876-90. Epub 2013 May 5.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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June 2013

Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.

Authors:

Elizabeth A Cameron Mallory A Maynard Christopher J Smith Thomas J Smith Nicole M Koropatkin Eric C Martens

J Biol Chem 2012 Oct 21;287(41):34614-25. Epub 2012 Aug 21.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.

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October 2012

Glycan recognition by the Bacteroidetes Sus-like systems.

Authors:

David N Bolam Nicole M Koropatkin

Curr Opin Struct Biol 2012 Oct 19;22(5):563-9. Epub 2012 Jul 19.

Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Framlington Place, Newcastle upon Tyne NE2 4HH, United Kingdom.

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October 2012