Publications by authors named "Nicole M Koropatkin"

49Publications

TonB-Dependent Transporters in the Bacteroidetes: Unique Domain Structures and Potential Functions.

Mol Microbiol 2021 Jan 15. Epub 2021 Jan 15.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

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January 2021

Imaging living obligate anaerobic bacteria with bilin-binding fluorescent proteins.

Curr Res Microb Sci 2020 Sep 11;1:1-6. Epub 2020 May 11.

Program in Chemical Biology, University of Michigan, Ann Arbor, MI, USA.

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September 2020

Host glycan utilization within the Bacteroidetes Sus-like paradigm.

Glycobiology 2020 Jun 10. Epub 2020 Jun 10.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109.

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June 2020

Nutrient-dependent morphological variability of .

Microbiology (Reading) 2020 07;166(7):624-628

Department of Chemistry, University of Michigan, Ann Arbor, MI, USA.

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July 2020

Starch Digestion by Gut Bacteria: Crowdsourcing for Carbs.

Trends Microbiol 2020 02 14;28(2):95-108. Epub 2019 Oct 14.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address:

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February 2020

Structural and biochemical characterization of 20β-hydroxysteroid dehydrogenase from strain L2-32.

J Biol Chem 2019 08 17;294(32):12040-12053. Epub 2019 Jun 17.

Microbiome Metabolic Engineering Theme, Carl R. Woese Institute for Genomic Biology, Urbana, Illinois 61801

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August 2019

Erratum for Baxter et al., "The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome".

mSphere 2019 May 22;4(3). Epub 2019 May 22.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA

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May 2019

The Glucoamylase Inhibitor Acarbose Has a Diet-Dependent and Reversible Effect on the Murine Gut Microbiome.

mSphere 2019 02 6;4(1). Epub 2019 Feb 6.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA

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February 2019

A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus.

J Mol Biol 2019 03 19;431(5):981-995. Epub 2019 Jan 19.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address:

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March 2019

Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress.

PLoS Pathog 2018 12 4;14(12):e1007476. Epub 2018 Dec 4.

Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, United States of America.

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December 2018

Structural basis for the flexible recognition of α-glucan substrates by Bacteroides thetaiotaomicron SusG.

Protein Sci 2018 06 17;27(6):1093-1101. Epub 2018 Apr 17.

Department of Microbiology and Immunology, University of Michigan Medical School, 1150 W Medical Center Drive, Ann Arbor, Michigan.

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June 2018

SusE facilitates starch uptake independent of starch binding in B. thetaiotaomicron.

Mol Microbiol 2018 06 14;108(5):551-566. Epub 2018 Apr 14.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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June 2018

The Starch Utilization System Assembles around Stationary Starch-Binding Proteins.

Biophys J 2018 07 12;115(2):242-250. Epub 2018 Jan 12.

Department of Chemistry, University of Michigan, Ann Arbor, Michigan. Electronic address:

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July 2018

Meds Modify Microbiome, Mediating Their Effects.

Cell Metab 2017 09;26(3):456-457

University of Michigan Medical School, Ann Arbor, MI, USA. Electronic address:

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September 2017

Biochemical and Structural Analyses of Two Cryptic Esterases in Bacteroides intestinalis and their Synergistic Activities with Cognate Xylanases.

J Mol Biol 2017 08 29;429(16):2509-2527. Epub 2017 Jun 29.

Carl R. Woese Institute for Genomic Biology (Microbiome Metabolic Engineering Theme), University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Animal Science, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Energy Biosciences Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Division of Nutritional Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Electronic address:

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August 2017

A polysaccharide utilization locus from enables conversion of recalcitrant chitin.

Biotechnol Biofuels 2016 28;9:260. Epub 2016 Nov 28.

Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), 1432 Ås, Norway.

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November 2016

Lysozyme activity of the Ruminococcus champanellensis cellulosome.

Environ Microbiol 2016 12 7;18(12):5112-5122. Epub 2016 Sep 7.

Biomolecular Sciences Department, The Weizmann Institute of Science, Rehovot, Israel.

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December 2016

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease.

J Mol Biol 2016 08 6;428(16):3230-3252. Epub 2016 Jul 6.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address:

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August 2016

The Sus operon: a model system for starch uptake by the human gut Bacteroidetes.

Cell Mol Life Sci 2016 07 2;73(14):2603-17. Epub 2016 May 2.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

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July 2016

Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.

mBio 2016 Apr 26;7(2):e02134-15. Epub 2016 Apr 26.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA

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April 2016

Outer membrane proteins related to SusC and SusD are not required for Cytophaga hutchinsonii cellulose utilization.

Appl Microbiol Biotechnol 2015 Aug 7;99(15):6339-50. Epub 2015 Apr 7.

Department of Biological Sciences, University of Wisconsin-Milwaukee, P.O. Box 413, Milwaukee, WI, 53201, USA.

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August 2015

Ruminococcal cellulosome systems from rumen to human.

Environ Microbiol 2015 Sep 7;17(9):3407-26. Epub 2015 May 7.

Department of Biological Chemistry, The Weizmann Institute of Science, Rehovot, Israel.

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September 2015

Superresolution imaging captures carbohydrate utilization dynamics in human gut symbionts.

mBio 2014 Nov 11;5(6):e02172. Epub 2014 Nov 11.

Department of Chemistry, University of Michigan, Ann Arbor, Michigan, USA

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November 2014

Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.

Mol Microbiol 2015 Jan 19;95(2):209-30. Epub 2014 Dec 19.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

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January 2015

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes.

Nature 2014 Feb 19;506(7489):498-502. Epub 2014 Jan 19.

1] Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden [2] Michael Smith Laboratories and Department of Chemistry, University of British Columbia, 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada.

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February 2014

Dynamic responses of Bacteroides thetaiotaomicron during growth on glycan mixtures.

Mol Microbiol 2013 Jun 5;88(5):876-90. Epub 2013 May 5.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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June 2013

Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.

J Biol Chem 2012 Oct 21;287(41):34614-25. Epub 2012 Aug 21.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.

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October 2012

Glycan recognition by the Bacteroidetes Sus-like systems.

Curr Opin Struct Biol 2012 Oct 19;22(5):563-9. Epub 2012 Jul 19.

Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Framlington Place, Newcastle upon Tyne NE2 4HH, United Kingdom.

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October 2012

How glycan metabolism shapes the human gut microbiota.

Nat Rev Microbiol 2012 Apr 11;10(5):323-35. Epub 2012 Apr 11.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.

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April 2012

The two faces of ToxR: activator of ompU, co-regulator of toxT in Vibrio cholerae.

Mol Microbiol 2011 Jul 5;81(1):113-28. Epub 2011 Jun 5.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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July 2011

Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm.

J Biol Chem 2009 Sep 24;284(37):24673-7. Epub 2009 Jun 24.

Center for Genome Sciences, Washington University School of Medicine, St. Louis, Missouri 63108, USA.

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September 2009

The structure of a cyanobacterial bicarbonate transport protein, CmpA.

J Biol Chem 2007 Jan 22;282(4):2606-14. Epub 2006 Nov 22.

Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA.

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January 2007

Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity.

Proc Natl Acad Sci U S A 2006 Jun 15;103(26):9820-5. Epub 2006 Jun 15.

Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO 63132, USA.

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June 2006

Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose.

Acta Crystallogr D Biol Crystallogr 2005 Apr 24;61(Pt 4):365-73. Epub 2005 Mar 24.

Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706-1544, USA.

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April 2005

Kinetic and structural analysis of alpha-D-Glucose-1-phosphate cytidylyltransferase from Salmonella typhi.

J Biol Chem 2005 Mar 5;280(11):10774-80. Epub 2005 Jan 5.

Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.

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March 2005

Molecular structure of alpha-D-glucose-1-phosphate cytidylyltransferase from Salmonella typhi.

J Biol Chem 2004 Oct 3;279(42):44023-9. Epub 2004 Aug 3.

Department of Biochemistry, University of Wisconsin, Madison 53706, USA.

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October 2004

High resolution x-ray structure of tyvelose epimerase from Salmonella typhi.

J Biol Chem 2003 Jun 17;278(23):20874-81. Epub 2003 Mar 17.

Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.

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June 2003