Nicolas Robine

Nicolas Robine

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Nicolas Robine

Nicolas Robine

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Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia.

Authors:
Nicole A McNeer John Philip Heather Geiger Rhonda E Ries Vincent-Philippe Lavallée Michael Walsh Minita Shah Kanika Arora Anne-Katrin Emde Nicolas Robine Todd A Alonzo E Anders Kolb Alan S Gamis Malcolm Smith Daniela Se Gerhard Jaime Guidry-Auvil Soheil Meshinchi Alex Kentsis

Leukemia 2019 08 13;33(8):1934-1943. Epub 2019 Feb 13.

Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

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http://dx.doi.org/10.1038/s41375-019-0402-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687545PMC
August 2019

Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments.

Authors:
Mayu O Frank Takahiko Koyama Kahn Rhrissorrakrai Nicolas Robine Filippo Utro Anne-Katrin Emde Bo-Juen Chen Kanika Arora Minita Shah Heather Geiger Vanessa Felice Esra Dikoglu Sadia Rahman Xiaolan Fang Vladimir Vacic Ewa A Bergmann Julia L Moore Vogel Catherine Reeves Depinder Khaira Anthony Calabro Duyang Kim Michelle F Lamendola-Essel Cecilia Esteves Phaedra Agius Christian Stolte John Boockvar Alexis Demopoulos Dimitris G Placantonakis John G Golfinos Cameron Brennan Jeffrey Bruce Andrew B Lassman Peter Canoll Christian Grommes Mariza Daras Eli Diamond Antonio Omuro Elena Pentsova Dana E Orange Stephen J Harvey Jerome B Posner Vanessa V Michelini Vaidehi Jobanputra Michael C Zody John Kelly Laxmi Parida Kazimierz O Wrzeszczynski Ajay K Royyuru Robert B Darnell

BMC Med Genomics 2019 Aug 2;12(1):114. Epub 2019 Aug 2.

New York Genome Center, 101 Avenue of the Americas, New York, NY, 10013, USA.

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http://dx.doi.org/10.1186/s12920-019-0563-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6676607PMC
August 2019

SCANVIS: a tool for SCoring, ANnotating and VISualizing splice junctions.

Authors:
Phaedra Agius Heather Geiger Nicolas Robine

Bioinformatics 2019 Jun 14. Epub 2019 Jun 14.

New York genome Center, New York, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz452DOI Listing
June 2019

Immunogenic neoantigens derived from gene fusions stimulate T cell responses.

Authors:
Wei Yang Ken-Wing Lee Raghvendra M Srivastava Fengshen Kuo Chirag Krishna Diego Chowell Vladimir Makarov Douglas Hoen Martin G Dalin Leonard Wexler Ronald Ghossein Nora Katabi Zaineb Nadeem Marc A Cohen S Ken Tian Nicolas Robine Kanika Arora Heather Geiger Phaedra Agius Nancy Bouvier Kety Huberman Katelynd Vanness Jonathan J Havel Jennifer S Sims Robert M Samstein Rajarsi Mandal Justin Tepe Ian Ganly Alan L Ho Nadeem Riaz Richard J Wong Neerav Shukla Timothy A Chan Luc G T Morris

Nat Med 2019 05 22;25(5):767-775. Epub 2019 Apr 22.

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

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http://www.nature.com/articles/s41591-019-0434-2
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http://dx.doi.org/10.1038/s41591-019-0434-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558662PMC
May 2019

Sequencing and curation strategies for identifying candidate glioblastoma treatments.

Authors:
Mayu O Frank Takahiko Koyama Kahn Rhrissorrakrai Nicolas Robine Filippo Utro Anne-Katrin Emde Bo-Juen Chen Kanika Arora Minita Shah Heather Geiger Vanessa Felice Esra Dikoglu Sadia Rahman Alice Fang Vladimir Vacic Ewa A Bergmann Julia L Moore Vogel Catherine Reeves Depinder Khaira Anthony Calabro Duyang Kim Michelle F Lamendola-Essel Cecilia Esteves Phaedra Agius Christian Stolte John Boockvar Alexis Demopoulos Dimitris G Placantonakis John G Golfinos Cameron Brennan Jeffrey Bruce Andrew B Lassman Peter Canoll Christian Grommes Mariza Daras Eli Diamond Antonio Omuro Elena Pentsova Dana E Orange Stephen J Harvey Jerome B Posner Vanessa V Michelini Vaidehi Jobanputra Michael C Zody John Kelly Laxmi Parida Kazimierz O Wrzeszczynski Ajay K Royyuru Robert B Darnell

BMC Med Genomics 2019 04 25;12(1):56. Epub 2019 Apr 25.

New York Genome Center, 101 Avenue of the Americas, New York, NY, 10013, USA.

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http://dx.doi.org/10.1186/s12920-019-0500-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485090PMC
April 2019

Human papillomavirus and the landscape of secondary genetic alterations in oral cancers.

Authors:
Maura L Gillison Keiko Akagi Weihong Xiao Bo Jiang Robert K L Pickard Jingfeng Li Benjamin J Swanson Amit D Agrawal Mark Zucker Birgit Stache-Crain Anne-Katrin Emde Heather M Geiger Nicolas Robine Kevin R Coombes David E Symer

Genome Res 2019 01 18;29(1):1-17. Epub 2018 Dec 18.

Department of Lymphoma and Myeloma, University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.

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http://genome.cshlp.org/lookup/doi/10.1101/gr.241141.118
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http://dx.doi.org/10.1101/gr.241141.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6314162PMC
January 2019

Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer.

Authors:
Kazimierz O Wrzeszczynski Vanessa Felice Avinash Abhyankar Lukasz Kozon Heather Geiger Dina Manaa Ferrah London Dino Robinson Xiaolan Fang David Lin Michelle F Lamendola-Essel Depinder Khaira Esra Dikoglu Anne-Katrin Emde Nicolas Robine Minita Shah Kanika Arora Olca Basturk Umesh Bhanot Alex Kentsis Mahesh M Mansukhani Govind Bhagat Vaidehi Jobanputra

J Mol Diagn 2018 11 21;20(6):822-835. Epub 2018 Aug 21.

New York Genome Center, New York, New York; Columbia University Medical Center, Columbia University, New York, New York. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2018.06.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6198246PMC
November 2018

Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer.

Authors:
Hervé Tiriac Pascal Belleau Dannielle D Engle Dennis Plenker Astrid Deschênes Tim D D Somerville Fieke E M Froeling Richard A Burkhart Robert E Denroche Gun-Ho Jang Koji Miyabayashi C Megan Young Hardik Patel Michelle Ma Joseph F LaComb Randze Lerie D Palmaira Ammar A Javed Jasmine C Huynh Molly Johnson Kanika Arora Nicolas Robine Minita Shah Rashesh Sanghvi Austin B Goetz Cinthya Y Lowder Laura Martello Else Driehuis Nicolas LeComte Gokce Askan Christine A Iacobuzio-Donahue Hans Clevers Laura D Wood Ralph H Hruban Elizabeth Thompson Andrew J Aguirre Brian M Wolpin Aaron Sasson Joseph Kim Maoxin Wu Juan Carlos Bucobo Peter Allen Divyesh V Sejpal William Nealon James D Sullivan Jordan M Winter Phyllis A Gimotty Jean L Grem Dominick J DiMaio Jonathan M Buscaglia Paul M Grandgenett Jonathan R Brody Michael A Hollingsworth Grainne M O'Kane Faiyaz Notta Edward Kim James M Crawford Craig Devoe Allyson Ocean Christopher L Wolfgang Kenneth H Yu Ellen Li Christopher R Vakoc Benjamin Hubert Sandra E Fischer Julie M Wilson Richard Moffitt Jennifer Knox Alexander Krasnitz Steven Gallinger David A Tuveson

Cancer Discov 2018 09 31;8(9):1112-1129. Epub 2018 May 31.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.

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http://dx.doi.org/10.1158/2159-8290.CD-18-0349DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6125219PMC
September 2018

amplification is a mechanism of acquired resistance to EGFR inhibitors identified by transposon mutagenesis and clinical genomics.

Authors:
Pang-Dian Fan Giuseppe Narzisi Anitha D Jayaprakash Elisa Venturini Nicolas Robine Peter Smibert Soren Germer Helena A Yu Emmet J Jordan Paul K Paik Yelena Y Janjigian Jamie E Chaft Lu Wang Achim A Jungbluth Sumit Middha Lee Spraggon Huan Qiao Christine M Lovly Mark G Kris Gregory J Riely Katerina Politi Harold Varmus Marc Ladanyi

Proc Natl Acad Sci U S A 2018 06 6;115(26):E6030-E6038. Epub 2018 Jun 6.

Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065;

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http://dx.doi.org/10.1073/pnas.1717782115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6042104PMC
June 2018

Identification of Three Rheumatoid Arthritis Disease Subtypes by Machine Learning Integration of Synovial Histologic Features and RNA Sequencing Data.

Authors:
Dana E Orange Phaedra Agius Edward F DiCarlo Nicolas Robine Heather Geiger Jackie Szymonifka Michael McNamara Ryan Cummings Kathleen M Andersen Serene Mirza Mark Figgie Lionel B Ivashkiv Alessandra B Pernis Caroline S Jiang Mayu O Frank Robert B Darnell Nithya Lingampali William H Robinson Ellen Gravallese Vivian P Bykerk Susan M Goodman Laura T Donlin

Arthritis Rheumatol 2018 05 2;70(5):690-701. Epub 2018 Apr 2.

Hospital for Special Surgery, New York, New York.

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http://doi.wiley.com/10.1002/art.40428
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http://dx.doi.org/10.1002/art.40428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336443PMC
May 2018

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time.

Authors:
André Corvelo Wayne E Clarke Nicolas Robine Michael C Zody

Genome Res 2018 05 27;28(5):751-758. Epub 2018 Mar 27.

New York Genome Center, New York, New York 10013, USA.

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http://dx.doi.org/10.1101/gr.225276.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932614PMC
May 2018

Genome-wide somatic variant calling using localized colored de Bruijn graphs.

Authors:
Giuseppe Narzisi André Corvelo Kanika Arora Ewa A Bergmann Minita Shah Rajeeva Musunuri Anne-Katrin Emde Nicolas Robine Vladimir Vacic Michael C Zody

Commun Biol 2018 22;1:20. Epub 2018 Mar 22.

1New York Genome Center, New York, NY 10013 USA.

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http://dx.doi.org/10.1038/s42003-018-0023-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123722PMC
March 2018

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.

Authors:
Kazimierz O Wrzeszczynski Mayu O Frank Takahiko Koyama Kahn Rhrissorrakrai Nicolas Robine Filippo Utro Anne-Katrin Emde Bo-Juen Chen Kanika Arora Minita Shah Vladimir Vacic Raquel Norel Erhan Bilal Ewa A Bergmann Julia L Moore Vogel Jeffrey N Bruce Andrew B Lassman Peter Canoll Christian Grommes Steve Harvey Laxmi Parida Vanessa V Michelini Michael C Zody Vaidehi Jobanputra Ajay K Royyuru Robert B Darnell

Neurol Genet 2017 Aug 11;3(4):e164. Epub 2017 Jul 11.

New York Genome Center (K.O.W., M.O.F., N.R., A.-K.E., B.-J.C., K.A., M.S., V.V., E.A.B., J.L.M.V., M.C.Z., V.J., R.B.D.); IBM Thomas J. Watson Research Center (T.K., K.R., F.U., R.N., E.B., L.P., A.K.R.); Columbia University Medical Center (J.N.B., A.B.L., P.C., V.J.); Memorial Sloan-Kettering Cancer Center (C.G.), New York, NY; IBM Watson Health (S.H., V.V.M.), Boca Raton, FL; Laboratory of Molecular Neuro-Oncology (M.O.F., R.B.D.), and Howard Hughes Medical Institute (R.B.D.), The Rockefeller University, New York, NY. B.-J.C. is currently affiliated with Google, New York, NY. V.V. is currently affiliated with 23andMe, Inc., Mountain View, CA. E.A.B. is currently affiliated with Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.

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http://dx.doi.org/10.1212/NXG.0000000000000164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5506390PMC
August 2017

ATRX is a regulator of therapy induced senescence in human cells.

Authors:
Marta Kovatcheva Will Liao Mary E Klein Nicolas Robine Heather Geiger Aimee M Crago Mark A Dickson William D Tap Samuel Singer Andrew Koff

Nat Commun 2017 08 30;8(1):386. Epub 2017 Aug 30.

The Louis V. Gerstner Graduate School of Biomedical Sciences, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, 10065, USA.

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http://dx.doi.org/10.1038/s41467-017-00540-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577318PMC
August 2017

Next-Generation Rapid Autopsies Enable Tumor Evolution Tracking and Generation of Preclinical Models.

Authors:
David J Pisapia Steven Salvatore Chantal Pauli Erika Hissong Ken Eng Davide Prandi Verena-Wilbeth Sailer Brian D Robinson Kyung Park Joanna Cyrta Scott T Tagawa Myriam Kossai Jacqueline Fontugne Robert Kim Alexandros Sigaras Rema Rao Danielle Pancirer Bishoy Faltas Rohan Bareja Ana M Molina David M Nanus Prajwal Rajappa Mark M Souweidane Jeffrey Greenfield Anne-Katrin Emde Nicolas Robine Olivier Elemento Andrea Sboner Francesca Demichelis Himisha Beltran Mark A Rubin Juan Miguel Mosquera

JCO Precis Oncol 2017 14;2017. Epub 2017 Jun 14.

Weill Cornell Medicine. The Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine and NewYork-Presbyterian Hospital.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5761727PMC
http://dx.doi.org/10.1200/PO.16.00038DOI Listing
June 2017

Structural insights into mis-regulation of protein kinase A in human tumors.

Authors:
Jonah Cheung Christopher Ginter Michael Cassidy Matthew C Franklin Michael J Rudolph Nicolas Robine Robert B Darnell Wayne A Hendrickson

Proc Natl Acad Sci U S A 2015 Feb 20;112(5):1374-9. Epub 2015 Jan 20.

New York Structural Biology Center, New York, NY 10027; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032

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http://dx.doi.org/10.1073/pnas.1424206112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321305PMC
February 2015

Prognostic value of miR-375 and miR-214-3p in early stage oral squamous cell carcinoma.

Authors:
Angela J Yoon Shuang Wang Jing Shen Nicolas Robine Elizabeth Philipone Martin W Oster Albert Nam Regina M Santella

Am J Transl Res 2014 11;6(5):580-92. Epub 2014 Oct 11.

Department of Environmental Health Sciences, Columbia University Mailman School of Public Health New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4212932PMC
October 2014

Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences.

Authors:
Laura M Cox Shingo Yamanishi Jiho Sohn Alexander V Alekseyenko Jacqueline M Leung Ilseung Cho Sungheon G Kim Huilin Li Zhan Gao Douglas Mahana Jorge G Zárate Rodriguez Arlin B Rogers Nicolas Robine P'ng Loke Martin J Blaser

Cell 2014 Aug;158(4):705-721

Department of Microbiology, NYU Langone Medical Center, New York, NY 10016, USA; Department of Medicine, NYU Langone Medical Center, New York, NY 10016, USA; New York Harbor Department of Veterans Affairs Medical Center, New York, NY 10010, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.05.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134513PMC
August 2014

Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines.

Authors:
Jiayu Wen Jaaved Mohammed Diane Bortolamiol-Becet Harrison Tsai Nicolas Robine Jakub O Westholm Erik Ladewig Qi Dai Katsutomo Okamura Alex S Flynt Dayu Zhang Justen Andrews Lucy Cherbas Thomas C Kaufman Peter Cherbas Adam Siepel Eric C Lai

Genome Res 2014 Jul;24(7):1236-50

Department of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA;

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http://dx.doi.org/10.1101/gr.161554.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079977PMC
July 2014

Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.

Authors:
Joshua N Honeyman Elana P Simon Nicolas Robine Rachel Chiaroni-Clarke David G Darcy Irene Isabel P Lim Caroline E Gleason Jennifer M Murphy Brad R Rosenberg Lydia Teegan Constantin N Takacs Sergio Botero Rachel Belote Soren Germer Anne-Katrin Emde Vladimir Vacic Umesh Bhanot Michael P LaQuaglia Sanford M Simon

Science 2014 Feb;343(6174):1010-4

Laboratory of Cellular Biophysics, Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.

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http://dx.doi.org/10.1126/science.1249484DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286414PMC
February 2014

Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

Authors:
Jakub O Westholm Erik Ladewig Katsutomo Okamura Nicolas Robine Eric C Lai

RNA 2012 Feb 21;18(2):177-92. Epub 2011 Dec 21.

Department of Developmental Biology, Sloan-Kettering Institute, New York, NY 10065, USA.

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http://dx.doi.org/10.1261/rna.030627.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3264906PMC
February 2012

A Drosophila genetic screen yields allelic series of core microRNA biogenesis factors and reveals post-developmental roles for microRNAs.

Authors:
Peter Smibert Fernando Bejarano Dong Wang Daniel L Garaulet Jr-Shiuan Yang Raquel Martin Diane Bortolamiol-Becet Nicolas Robine P Robin Hiesinger Eric C Lai

RNA 2011 Nov 23;17(11):1997-2010. Epub 2011 Sep 23.

Department of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA.

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http://dx.doi.org/10.1261/rna.2983511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3198593PMC
November 2011

R2D2 organizes small regulatory RNA pathways in Drosophila.

Authors:
Katsutomo Okamura Nicolas Robine Ying Liu Qinghua Liu Eric C Lai

Mol Cell Biol 2011 Feb 6;31(4):884-96. Epub 2010 Dec 6.

Sloan-Kettering Institute, Department of Developmental Biology, New York, NY 10065, USA.

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http://dx.doi.org/10.1128/MCB.01141-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3028645PMC
February 2011

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Authors:
Wei-Jen Chung Phaedra Agius Jakub O Westholm Michael Chen Katsutomo Okamura Nicolas Robine Christina S Leslie Eric C Lai

Genome Res 2011 Feb 22;21(2):286-300. Epub 2010 Dec 22.

Department of Developmental Biology, Sloan-Kettering Institute, 1017 Rockefeller Research Laboratories, New York, New York 10065, USA.

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http://dx.doi.org/10.1101/gr.113050.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032932PMC
February 2011

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Authors:
Eugene Berezikov Nicolas Robine Anastasia Samsonova Jakub O Westholm Ammar Naqvi Jui-Hung Hung Katsutomo Okamura Qi Dai Diane Bortolamiol-Becet Raquel Martin Yongjun Zhao Phillip D Zamore Gregory J Hannon Marco A Marra Zhiping Weng Norbert Perrimon Eric C Lai

Genome Res 2011 Feb 22;21(2):203-15. Epub 2010 Dec 22.

Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, 3584 CT Utrecht, The Netherlands.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.116657.110
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http://dx.doi.org/10.1101/gr.116657.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032924PMC
February 2011

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Authors:
Sushmita Roy Jason Ernst Peter V Kharchenko Pouya Kheradpour Nicolas Negre Matthew L Eaton Jane M Landolin Christopher A Bristow Lijia Ma Michael F Lin Stefan Washietl Bradley I Arshinoff Ferhat Ay Patrick E Meyer Nicolas Robine Nicole L Washington Luisa Di Stefano Eugene Berezikov Christopher D Brown Rogerio Candeias Joseph W Carlson Adrian Carr Irwin Jungreis Daniel Marbach Rachel Sealfon Michael Y Tolstorukov Sebastian Will Artyom A Alekseyenko Carlo Artieri Benjamin W Booth Angela N Brooks Qi Dai Carrie A Davis Michael O Duff Xin Feng Andrey A Gorchakov Tingting Gu Jorja G Henikoff Philipp Kapranov Renhua Li Heather K MacAlpine John Malone Aki Minoda Jared Nordman Katsutomo Okamura Marc Perry Sara K Powell Nicole C Riddle Akiko Sakai Anastasia Samsonova Jeremy E Sandler Yuri B Schwartz Noa Sher Rebecca Spokony David Sturgill Marijke van Baren Kenneth H Wan Li Yang Charles Yu Elise Feingold Peter Good Mark Guyer Rebecca Lowdon Kami Ahmad Justen Andrews Bonnie Berger Steven E Brenner Michael R Brent Lucy Cherbas Sarah C R Elgin Thomas R Gingeras Robert Grossman Roger A Hoskins Thomas C Kaufman William Kent Mitzi I Kuroda Terry Orr-Weaver Norbert Perrimon Vincenzo Pirrotta James W Posakony Bing Ren Steven Russell Peter Cherbas Brenton R Graveley Suzanna Lewis Gos Micklem Brian Oliver Peter J Park Susan E Celniker Steven Henikoff Gary H Karpen Eric C Lai David M MacAlpine Lincoln D Stein Kevin P White Manolis Kellis

Science 2010 Dec 22;330(6012):1787-97. Epub 2010 Dec 22.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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http://compbio.mit.edu/publications/46_modENCODE_Science_10.
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http://www.sciencemag.org/cgi/doi/10.1126/science.1198374
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http://dx.doi.org/10.1126/science.1198374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192495PMC
December 2010

Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.

Authors:
Christel Rouget Catherine Papin Anthony Boureux Anne-Cécile Meunier Bénédicte Franco Nicolas Robine Eric C Lai Alain Pelisson Martine Simonelig

Nature 2010 Oct 17;467(7319):1128-32. Epub 2010 Oct 17.

mRNA Regulation and Development, Institute of Human Genetics, CNRS UPR1142, 141 rue de la Cardonille, Cedex 5, 34396 Montpellier, France.

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http://www.nature.com/doifinder/10.1038/nature09465
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http://dx.doi.org/10.1038/nature09465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4505748PMC
October 2010

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.

Authors:
Jr-Shiuan Yang Thomas Maurin Nicolas Robine Kasper D Rasmussen Kate L Jeffrey Rohit Chandwani Eirini P Papapetrou Michel Sadelain Dónal O'Carroll Eric C Lai

Proc Natl Acad Sci U S A 2010 Aug 10;107(34):15163-8. Epub 2010 Aug 10.

Department of Developmental Biology, Sloan-Kettering Institute, New York, NY 10065, USA.

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http://dx.doi.org/10.1073/pnas.1006432107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2930549PMC
August 2010

A broadly conserved pathway generates 3'UTR-directed primary piRNAs.

Authors:
Nicolas Robine Nelson C Lau Sudha Balla Zhigang Jin Katsutomo Okamura Satomi Kuramochi-Miyagawa Michael D Blower Eric C Lai

Curr Biol 2009 Dec;19(24):2066-76

Department of Developmental Biology, Sloan-Kettering Institute, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.cub.2009.11.064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2812478PMC
December 2009

Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line.

Authors:
Nelson C Lau Nicolas Robine Raquel Martin Wei-Jen Chung Yuzo Niki Eugene Berezikov Eric C Lai

Genome Res 2009 Oct 18;19(10):1776-85. Epub 2009 Jun 18.

Department of Molecular Biology, Massachusetts General Hospital, Boston, 02114, USA.

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http://dx.doi.org/10.1101/gr.094896.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765285PMC
October 2009

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

Authors:
Valérie Borde Nicolas Robine Waka Lin Sandrine Bonfils Vincent Géli Alain Nicolas

EMBO J 2009 Jan 11;28(2):99-111. Epub 2008 Dec 11.

Institut Curie Centre de Recherche, UMR7147 CNRS, Université Pierre et Marie Curie, Paris, France.

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http://emboj.embopress.org/cgi/doi/10.1038/emboj.2008.257
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http://dx.doi.org/10.1038/emboj.2008.257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2634730PMC
January 2009

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Authors:
Ulrich Schlecht Ionas Erb Philippe Demougin Nicolas Robine Valérie Borde Erik van Nimwegen Alain Nicolas Michael Primig

Mol Biol Cell 2008 May 27;19(5):2193-207. Epub 2008 Feb 27.

Biozentrum and Swiss Institute of Bioinformatics, CH-4056 Basel, Switzerland.

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http://www.molbiolcell.org/content/19/5/2193.full.pdf
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https://hal.inria.fr/docs/00/52/88/65/PDF/2193.pdf
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http://www.molbiolcell.org/cgi/doi/10.1091/mbc.E07-12-1242
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http://dx.doi.org/10.1091/mbc.e07-12-1242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2366881PMC
May 2008

Genome-wide redistribution of meiotic double-strand breaks in Saccharomyces cerevisiae.

Authors:
Nicolas Robine Norio Uematsu Franck Amiot Xavier Gidrol Emmanuel Barillot Alain Nicolas Valérie Borde

Mol Cell Biol 2007 Mar 22;27(5):1868-80. Epub 2006 Dec 22.

Institut Curie, Recombinaison et Instabilité Génétique, Centre de Recherche, UMR7147 CNRS-Institut Curie-Université P. et M. Curie, 26 rue d'Ulm, 75248 Paris Cedex 05, France.

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http://dx.doi.org/10.1128/MCB.02063-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1820458PMC
March 2007

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

Authors:
Philippe La Rosa Eric Viara Philippe Hupé Gaëlle Pierron Stéphane Liva Pierre Neuvial Isabel Brito Séverine Lair Nicolas Servant Nicolas Robine Elodie Manié Caroline Brennetot Isabelle Janoueix-Lerosey Virginie Raynal Nadège Gruel Céline Rouveirol Nicolas Stransky Marc-Henri Stern Olivier Delattre Alain Aurias François Radvanyi Emmanuel Barillot

Bioinformatics 2006 Sep 4;22(17):2066-73. Epub 2006 Jul 4.

Institut Curie, Service Bioinformatique, 26 rue d'Ulm, Paris 75248 cedex 05, France.

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http://dx.doi.org/10.1093/bioinformatics/btl359DOI Listing
September 2006