Nicolas Robine

Nicolas Robine

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Nicolas Robine

Nicolas Robine

Publications by authors named "Nicolas Robine"

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34Publications

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SCANVIS: a tool for SCoring, ANnotating and VISualizing splice junctions.

Bioinformatics 2019 Jun 14. Epub 2019 Jun 14.

New York genome Center, New York, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz452DOI Listing
June 2019

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time.

Genome Res 2018 05 27;28(5):751-758. Epub 2018 Mar 27.

New York Genome Center, New York, New York 10013, USA.

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http://dx.doi.org/10.1101/gr.225276.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932614PMC
May 2018

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.

Neurol Genet 2017 Aug 11;3(4):e164. Epub 2017 Jul 11.

New York Genome Center (K.O.W., M.O.F., N.R., A.-K.E., B.-J.C., K.A., M.S., V.V., E.A.B., J.L.M.V., M.C.Z., V.J., R.B.D.); IBM Thomas J. Watson Research Center (T.K., K.R., F.U., R.N., E.B., L.P., A.K.R.); Columbia University Medical Center (J.N.B., A.B.L., P.C., V.J.); Memorial Sloan-Kettering Cancer Center (C.G.), New York, NY; IBM Watson Health (S.H., V.V.M.), Boca Raton, FL; Laboratory of Molecular Neuro-Oncology (M.O.F., R.B.D.), and Howard Hughes Medical Institute (R.B.D.), The Rockefeller University, New York, NY. B.-J.C. is currently affiliated with Google, New York, NY. V.V. is currently affiliated with 23andMe, Inc., Mountain View, CA. E.A.B. is currently affiliated with Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.

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http://dx.doi.org/10.1212/NXG.0000000000000164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5506390PMC
August 2017

ATRX is a regulator of therapy induced senescence in human cells.

Nat Commun 2017 08 30;8(1):386. Epub 2017 Aug 30.

The Louis V. Gerstner Graduate School of Biomedical Sciences, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, 10065, USA.

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http://dx.doi.org/10.1038/s41467-017-00540-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577318PMC
August 2017

Structural insights into mis-regulation of protein kinase A in human tumors.

Proc Natl Acad Sci U S A 2015 Feb 20;112(5):1374-9. Epub 2015 Jan 20.

New York Structural Biology Center, New York, NY 10027; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032

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http://dx.doi.org/10.1073/pnas.1424206112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321305PMC
February 2015

Prognostic value of miR-375 and miR-214-3p in early stage oral squamous cell carcinoma.

Am J Transl Res 2014 11;6(5):580-92. Epub 2014 Oct 11.

Department of Environmental Health Sciences, Columbia University Mailman School of Public Health New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4212932PMC
October 2014

Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences.

Cell 2014 Aug;158(4):705-721

Department of Microbiology, NYU Langone Medical Center, New York, NY 10016, USA; Department of Medicine, NYU Langone Medical Center, New York, NY 10016, USA; New York Harbor Department of Veterans Affairs Medical Center, New York, NY 10010, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.05.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134513PMC
August 2014

Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

RNA 2012 Feb 21;18(2):177-92. Epub 2011 Dec 21.

Department of Developmental Biology, Sloan-Kettering Institute, New York, NY 10065, USA.

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http://dx.doi.org/10.1261/rna.030627.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3264906PMC
February 2012

R2D2 organizes small regulatory RNA pathways in Drosophila.

Mol Cell Biol 2011 Feb 6;31(4):884-96. Epub 2010 Dec 6.

Sloan-Kettering Institute, Department of Developmental Biology, New York, NY 10065, USA.

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http://dx.doi.org/10.1128/MCB.01141-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3028645PMC
February 2011

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans.

Genome Res 2011 Feb 22;21(2):286-300. Epub 2010 Dec 22.

Department of Developmental Biology, Sloan-Kettering Institute, 1017 Rockefeller Research Laboratories, New York, New York 10065, USA.

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http://dx.doi.org/10.1101/gr.113050.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032932PMC
February 2011

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Science 2010 Dec 22;330(6012):1787-97. Epub 2010 Dec 22.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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http://compbio.mit.edu/publications/46_modENCODE_Science_10.
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http://www.sciencemag.org/cgi/doi/10.1126/science.1198374
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http://dx.doi.org/10.1126/science.1198374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192495PMC
December 2010

Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.

Nature 2010 Oct 17;467(7319):1128-32. Epub 2010 Oct 17.

mRNA Regulation and Development, Institute of Human Genetics, CNRS UPR1142, 141 rue de la Cardonille, Cedex 5, 34396 Montpellier, France.

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http://www.nature.com/doifinder/10.1038/nature09465
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http://dx.doi.org/10.1038/nature09465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4505748PMC
October 2010

A broadly conserved pathway generates 3'UTR-directed primary piRNAs.

Curr Biol 2009 Dec;19(24):2066-76

Department of Developmental Biology, Sloan-Kettering Institute, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.cub.2009.11.064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2812478PMC
December 2009

Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line.

Genome Res 2009 Oct 18;19(10):1776-85. Epub 2009 Jun 18.

Department of Molecular Biology, Massachusetts General Hospital, Boston, 02114, USA.

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http://dx.doi.org/10.1101/gr.094896.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765285PMC
October 2009

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

EMBO J 2009 Jan 11;28(2):99-111. Epub 2008 Dec 11.

Institut Curie Centre de Recherche, UMR7147 CNRS, Université Pierre et Marie Curie, Paris, France.

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http://emboj.embopress.org/cgi/doi/10.1038/emboj.2008.257
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http://dx.doi.org/10.1038/emboj.2008.257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2634730PMC
January 2009

Genome-wide redistribution of meiotic double-strand breaks in Saccharomyces cerevisiae.

Mol Cell Biol 2007 Mar 22;27(5):1868-80. Epub 2006 Dec 22.

Institut Curie, Recombinaison et Instabilité Génétique, Centre de Recherche, UMR7147 CNRS-Institut Curie-Université P. et M. Curie, 26 rue d'Ulm, 75248 Paris Cedex 05, France.

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http://dx.doi.org/10.1128/MCB.02063-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1820458PMC
March 2007