Nicholas H Putnam

Nicholas H Putnam

UNVERIFIED PROFILE

Are you Nicholas H Putnam?   Register this Author

Register author
Nicholas H Putnam

Nicholas H Putnam

Publications by authors named "Nicholas H Putnam"

Are you Nicholas H Putnam?   Register this Author

26Publications

1216Reads

11Profile Views

Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue.

J Mol Diagn 2019 05 31;21(3):375-383. Epub 2018 Dec 31.

Department of Pathology, Stanford University School of Medicine, Stanford, California; Department of Biomedical Data Science, Stanford University School of Medicine, Stanford, California. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S15251578183017
Publisher Site
http://dx.doi.org/10.1016/j.jmoldx.2018.11.003DOI Listing
May 2019

Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis.

Gigascience 2016 10;5:20. Epub 2016 May 10.

Whitney Laboratory for Marine Bioscience, University of Florida, 9505 Ocean Shore Blvd., St Augustine, FL 32080 USA ; Department of Biology, University of Florida, Gainesville, FL 32611-8525 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13742-016-0125-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863316PMC
October 2017

Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle.

Genome Biol Evol 2016 08 25;8(8):2387-405. Epub 2016 Aug 25.

Marine Biology Research Division, Scripps Institution of Oceanography, UC San Diego, La Jolla, California

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evw158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010895PMC
August 2016

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.

Genome Res 2016 Mar 4;26(3):342-50. Epub 2016 Feb 4.

Dovetail Genomics LLC, Santa Cruz, California 95060, USA; Department of Biomolecular Engineering, University of California, Santa Cruz, California 95066, USA;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.193474.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772016PMC
March 2016

Evolution of the perlecan/HSPG2 gene and its activation in regenerating Nematostella vectensis.

PLoS One 2015 15;10(4):e0124578. Epub 2015 Apr 15.

Department of BioSciences, Rice University, Houston, Texas, United States; Department of Bioengineering, Rice University, Houston, Texas, United States.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124578PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4398486PMC
January 2016

Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida.

Genome Biol Evol 2015 Dec 10;8(1):271-81. Epub 2015 Dec 10.

Whitney Laboratory for Marine Bioscience, University of Florida Department of Biology, University of Florida

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evv243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758240PMC
December 2015

Evolutionary profiling reveals the heterogeneous origins of classes of human disease genes: implications for modeling disease genetics in animals.

BMC Evol Biol 2014 Oct 4;14:212. Epub 2014 Oct 4.

Computational and Statistical Genomics Branch, Division of Intramural Research, National Human Genome Research, National Institutes of Health, Bethesda, MD, 20892, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12862-014-0212-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4219131PMC
October 2014

The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolution.

Genome Biol Evol 2014 Sep 19;6(10):2681-96. Epub 2014 Sep 19.

Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gbe/evu212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4224339PMC
September 2014

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication.

Gigascience 2014 14;3. Epub 2014 May 14.

Department of Ecology and Evolutionary Biology, Rice University, P.O. Box 1892, Houston, TX 77251-1892, USA ; Department of Biochemistry and Cell Biology, Rice University, P.O. Box 1892, Houston, TX 77251-1892, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2047-217X-3-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066314PMC
July 2014

Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes.

BMC Bioinformatics 2011 Oct 5;12 Suppl 9:S11. Epub 2011 Oct 5.

Department of Ecology and Evolutionary Biology, Rice University, Houston, TX 77098, USA.

View Article

Download full-text PDF

Source
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-12-S9-S11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3283319PMC
October 2011

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

Domain shuffling and the evolution of vertebrates.

Genome Res 2009 Aug 14;19(8):1393-403. Epub 2009 May 14.

Okinawa Institute of Science and Technology, Uruma, Okinawa, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.087072.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720177PMC
August 2009

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

Genome Inform 2007 ;19:50-60

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

View Article

Download full-text PDF

Source
July 2008