Publications by authors named "Nathan D Trinklein"

28Publications

Perspective: Designing T-Cell Engagers With Better Therapeutic Windows.

Front Oncol 2020 15;10:446. Epub 2020 Apr 15.

Teneobio, Inc., Newark, CA, United States.

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http://dx.doi.org/10.3389/fonc.2020.00446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7174563PMC
April 2020

Author Correction: Anti-BCMA chimeric antigen receptors with fully human heavy-chain-only antigen recognition domains.

Nat Commun 2020 Mar 9;11(1):1319. Epub 2020 Mar 9.

National Institutes of Health, National Cancer Institute, Center for Cancer Research, Surgery Branch, NIH Building 10 Room 3-3888, Bethesda, MD, 20892, USA.

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http://dx.doi.org/10.1038/s41467-020-15145-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062892PMC
March 2020

Anti-BCMA chimeric antigen receptors with fully human heavy-chain-only antigen recognition domains.

Nat Commun 2020 01 15;11(1):283. Epub 2020 Jan 15.

National Institutes of Health, National Cancer Institute, Center for Cancer Research, Surgery Branch, NIH Building 10 Room 3-3888, Bethesda, MD, 20892, USA.

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http://dx.doi.org/10.1038/s41467-019-14119-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962219PMC
January 2020

A Single Human Papillomavirus Vaccine Dose Improves B Cell Memory in Previously Infected Subjects.

EBioMedicine 2016 Aug 29;10:55-64. Epub 2016 Jun 29.

Human Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA; Department of Microbiology, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2016.06.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5006801PMC
August 2016

Genome-wide discovery of drug-dependent human liver regulatory elements.

PLoS Genet 2014 Oct 2;10(10):e1004648. Epub 2014 Oct 2.

Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, United States of America; Institute for Human Genetics, University of California, San Francisco, San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004648DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183418PMC
October 2014

Functional analysis of transcription factor binding sites in human promoters.

Genome Biol 2012 Sep 26;13(9):R50. Epub 2012 Sep 26.

Program in Bioinformatics and Integrative Biology and Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

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http://dx.doi.org/10.1186/gb-2012-13-9-r50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491394PMC
September 2012

Sequence features that drive human promoter function and tissue specificity.

Genome Res 2010 Jul 25;20(7):890-8. Epub 2010 May 25.

Division of Life Sciences, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1101/gr.100370.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2892090PMC
July 2010

The ets-related transcription factor GABP directs bidirectional transcription.

PLoS Genet 2007 Nov;3(11):e208

Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0030208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2077898PMC
November 2007

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Transcription factor binding and modified histones in human bidirectional promoters.

Genome Res 2007 Jun;17(6):818-27

Department of Biomedical Engineering, Boston University, Boston, Massachusetts, 02215, USA.

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http://dx.doi.org/10.1101/gr.5623407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891341PMC
June 2007

Serum response factor binding sites differ in three human cell types.

Genome Res 2007 Feb 2;17(2):136-44. Epub 2007 Jan 2.

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.5875007
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http://dx.doi.org/10.1101/gr.5875007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781345PMC
February 2007

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.

Genome Res 2006 Jan 12;16(1):1-10. Epub 2005 Dec 12.

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120, USA.

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http://dx.doi.org/10.1101/gr.4222606DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1356123PMC
January 2006

Direct isolation and identification of promoters in the human genome.

Genome Res 2005 Jun 17;15(6):830-9. Epub 2005 May 17.

Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1101/gr.3430605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1142473PMC
June 2005

Diverse and specific gene expression responses to stresses in cultured human cells.

Mol Biol Cell 2004 May 5;15(5):2361-74. Epub 2004 Mar 5.

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1091/mbc.e03-11-0799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC404029PMC
May 2004

An abundance of bidirectional promoters in the human genome.

Genome Res 2004 Jan;14(1):62-6

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.1982804
Publisher Site
http://dx.doi.org/10.1101/gr.1982804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC314279PMC
January 2004

Identification and functional analysis of human transcriptional promoters.

Genome Res 2003 Feb;13(2):308-12

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120, USA.

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http://dx.doi.org/10.1101/gr.794803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC420378PMC
February 2003