Publications by authors named "Nathalie Selevsek"

35Publications

Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease.

Front Cell Infect Microbiol 2020 2;10:588155. Epub 2020 Oct 2.

Division of Oral Diseases, Department of Dental Medicine, Karolinska Insitutet, Huddinge, Sweden.

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http://dx.doi.org/10.3389/fcimb.2020.588155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566166PMC
October 2020

Pressure Cycling Technology Assisted Mass Spectrometric Quantification of Gingival Tissue Reveals Proteome Dynamics during the Initiation and Progression of Inflammatory Periodontal Disease.

Proteomics 2020 02 15;20(3-4):e1900253. Epub 2020 Jan 15.

Section of Peridontology and Dental Prevention, Division of Oral Diseases, Department of Dental Medicine, Kartolinska Insitutet, Alfred Nobels alle 8, 14104, Huddinge, Sweden.

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http://dx.doi.org/10.1002/pmic.201900253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7033018PMC
February 2020

Subregion-Specific Proteomic Signature in the Hippocampus for Recognition Processes in Adult Mice.

Cell Rep 2018 03;22(12):3362-3374

Laboratory of Neuroepigenetics, University of Zürich/Swiss Federal Institute of Technology, Brain Research Institute, Neuroscience Center Zürich, Winterthurerstrasse 190, Zürich 8057, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.02.079DOI Listing
March 2018

Quantitative Profiling of N-linked Glycosylation Machinery in Yeast .

Mol Cell Proteomics 2018 01 9;17(1):18-30. Epub 2017 Oct 9.

From the ‡Institute of Microbiology, ETH Zurich, Vladimir-Prelog-Weg 4, CH-8093 Zurich, Switzerland;

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http://dx.doi.org/10.1074/mcp.RA117.000096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5750847PMC
January 2018

New Quantitative Mass Spectrometry Approaches Reveal Different ADP-ribosylation Phases Dependent On the Levels of Oxidative Stress.

Mol Cell Proteomics 2017 05 21;16(5):949-958. Epub 2017 Mar 21.

From the ‡Department of Molecular Mechanisms of Disease, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland;

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http://dx.doi.org/10.1074/mcp.O116.065623DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5417832PMC
May 2017

Targeted Proteomics for Multiplexed Verification of Markers of Colorectal Tumorigenesis.

Mol Cell Proteomics 2017 03 4;16(3):407-427. Epub 2017 Jan 4.

From the ‡Institute of Molecular Cancer Research, University of Zurich, Switzerland;

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http://dx.doi.org/10.1074/mcp.M116.062273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341002PMC
March 2017

Targeted proteomics coming of age - SRM, PRM and DIA performance evaluated from a core facility perspective.

Proteomics 2016 08 8;16(15-16):2183-92. Epub 2016 Jun 8.

Functional Genomics Center Zurich, ETH Zurich/University of Zurich, Winterthurerstr, Zurich, Switzerland.

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http://dx.doi.org/10.1002/pmic.201500502DOI Listing
August 2016

Proteomic profiling of host-biofilm interactions in an oral infection model resembling the periodontal pocket.

Sci Rep 2015 Nov 3;5:15999. Epub 2015 Nov 3.

Oral Translational Research, Institute for Oral Biology, Center of Dental Medicine, University of Zürich, Zürich, Switzerland.

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http://dx.doi.org/10.1038/srep15999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4630604PMC
November 2015

Mass Spectrometric Proteome Analysis of Small Three-Dimensional Microtissues Allows for the Quantitative Description of Toxic Effects of Drugs.

Chimia (Aarau) 2015 Aug;69(7):494

Functional Genomics Center Zurich, ETH Zurich and University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.

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http://dx.doi.org/10.2533/chimia.2015.494DOI Listing
August 2015

Protein degradation corrects for imbalanced subunit stoichiometry in OST complex assembly.

Mol Biol Cell 2015 Jul 20;26(14):2596-608. Epub 2015 May 20.

Institute of Microbiology, Department of Biology, Swiss Federal Institute of Technology, ETH Zurich, CH-8093 Zurich, Switzerland

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http://dx.doi.org/10.1091/mbc.E15-03-0168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501358PMC
July 2015

Quantitative proteomics reveal distinct protein regulations caused by Aggregatibacter actinomycetemcomitans within subgingival biofilms.

PLoS One 2015 10;10(3):e0119222. Epub 2015 Mar 10.

Oral Microbiology and Immunology, Institute for Oral Biology, Center of Dental Medicine, University of Zurich, Zurich, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0119222PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355292PMC
January 2016

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.

Mol Cell Proteomics 2015 Mar 5;14(3):739-49. Epub 2015 Jan 5.

From the ‡Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, 8093 Zürich, Switzerland; ‡‡Faculty of Science, University of Zürich, Switzerland;

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http://dx.doi.org/10.1074/mcp.M113.035550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349991PMC
March 2015

Timescales and bottlenecks in miRNA-dependent gene regulation.

Mol Syst Biol 2013 Dec 3;9:711. Epub 2013 Dec 3.

Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland.

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http://dx.doi.org/10.1038/msb.2013.68DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3882800PMC
December 2013

Systematic proteomic analysis identifies β-site amyloid precursor protein cleaving enzyme 2 and 1 (BACE2 and BACE1) substrates in pancreatic β-cells.

J Biol Chem 2013 Apr 19;288(15):10536-47. Epub 2013 Feb 19.

Department of Biology, Institute of Molecular Health Sciences, ETH Zürich, CH-8093 Zürich, Switzerland.

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http://dx.doi.org/10.1074/jbc.M112.444703DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624435PMC
April 2013

Glucagon-induced acetylation of Foxa2 regulates hepatic lipid metabolism.

Cell Metab 2013 Mar 14;17(3):436-47. Epub 2013 Feb 14.

Institute of Molecular Health Sciences, ETH Zurich, Schafmattstrasse 22, 8093 Zurich, Switzerland.

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http://dx.doi.org/10.1016/j.cmet.2013.01.014DOI Listing
March 2013

Automated workflow for large-scale selected reaction monitoring experiments.

J Proteome Res 2012 Mar 10;11(3):1644-53. Epub 2012 Feb 10.

Institute of Molecular Systems Biology , ETH Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1021/pr200844dDOI Listing
March 2012

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Mol Cell Proteomics 2012 Jun 18;11(6):O111.016717. Epub 2012 Jan 18.

Department of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, 8093 Zürich, Switzerland.

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http://dx.doi.org/10.1074/mcp.O111.016717DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3433915PMC
June 2012

Mass spectrometry-based proteomics for systems biology.

Curr Opin Biotechnol 2012 Aug 12;23(4):591-7. Epub 2011 Dec 12.

Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Wolfgang-Pauli-Strasse 16, 8093 Zurich, Switzerland.

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http://dx.doi.org/10.1016/j.copbio.2011.11.014DOI Listing
August 2012

Systematic quantification of peptides/proteins in urine using selected reaction monitoring.

Proteomics 2011 Mar 16;11(6):1135-47. Epub 2011 Feb 16.

Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1002/pmic.201000599DOI Listing
March 2011

Toward a standardized urine proteome analysis methodology.

Proteomics 2011 Mar 16;11(6):1160-71. Epub 2011 Feb 16.

DECanBio consortium, France.

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http://dx.doi.org/10.1002/pmic.201000566DOI Listing
March 2011

Combined mass spectrometry and dynamic chemistry approach to identify metalloenzyme inhibitors.

ChemMedChem 2007 Feb;2(2):175-9

Chemistry Research Laboratory, Mansfield Road, Oxford OX1 3TA, UK.

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http://dx.doi.org/10.1002/cmdc.200600250DOI Listing
February 2007

Studies on ternary metallo-β lactamase-inhibitor complexes using electrospray ionization mass spectrometry.

J Am Soc Mass Spectrom 2006 Jul 1;17(7):1000-1004. Epub 2006 Jul 1.

Center for Protein Engineering, Institute for Chemistry, University of Liège, Liège, Belgium.

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http://dx.doi.org/10.1016/j.jasms.2006.03.010DOI Listing
July 2006

Studies on ternary metallo-beta lactamase-inhibitor complexes using electrospray ionization mass spectrometry.

J Am Soc Mass Spectrom 2006 Jul 19;17(7):1000-4. Epub 2006 May 19.

Department of Biochemical Engineering, Saarland University, Saarbrücken, Germany.

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http://dx.doi.org/10.1016/j.jasms.2006.03.010DOI Listing
July 2006