Naruya Saitou

Naruya Saitou

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Chance, Finiteness, and History.

Authors:
Naruya Saitou

Mol Biol Evol 2018 06;35(6):1556-1557

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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https://academic.oup.com/mbe/article/35/6/1556/4985476
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http://dx.doi.org/10.1093/molbev/msy087DOI Listing
June 2018

Draft genome sequence of Japanese wood mouse, .

Data Brief 2018 Feb 31;16:43-46. Epub 2017 Oct 31.

Ecological Risk Assessment and Control Section, Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, 16-2, Onogawa, Tsukuba, Ibaraki 305-8506, Japan.

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http://dx.doi.org/10.1016/j.dib.2017.10.063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5848110PMC
February 2018

Silencing Effect of Hominoid Highly Conserved Noncoding Sequences on Embryonic Brain Development.

Genome Biol Evol 2017 08;9(8):2037-2048

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/gbe/evx105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5591954PMC
August 2017

A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan.

J Hum Genet 2017 Feb 1;62(2):213-221. Epub 2016 Sep 1.

Department of Genetics, School of Life Science, SOKENDAI (Graduate University for Advanced Studies), Mishima, Japan.

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http://dx.doi.org/10.1038/jhg.2016.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5285490PMC
February 2017

GC Content Heterogeneity Transition of Conserved Noncoding Sequences Occurred at the Emergence of Vertebrates.

Genome Biol Evol 2016 12 31;8(11):3377-3392. Epub 2016 Dec 31.

Department of Genetics, School of Life Science, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan

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http://dx.doi.org/10.1093/gbe/evw231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203776PMC
December 2016

Human genetic diversity in the Japanese Archipelago: dual structure and beyond.

Genes Genet Syst 2015 ;90(3):147-52

Division of Population Genetics, National Institute of Genetics.

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http://dx.doi.org/10.1266/ggs.90.147DOI Listing
August 2016

Genomic Locations of Conserved Noncoding Sequences and Their Proximal Protein-Coding Genes in Mammalian Expression Dynamics.

Mol Biol Evol 2016 07 26;33(7):1807-17. Epub 2016 Mar 26.

Department of Genetics, Graduate University for Advanced Studies, Mishima, Japan Division of Population Genetics, National Institute of Genetics, Mishima, Japan

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msw058DOI Listing
July 2016

Emergence and Evolution of Hominidae-Specific Coding and Noncoding Genomic Sequences.

Genome Biol Evol 2016 07 12;8(7):2076-92. Epub 2016 Jul 12.

Department of Biological Sciences, Graduate School of Science, University of Tokyo Division of Population Genetics, National Institute of Genetics, Mishima, Japan Department of Genetics, School of Life Science, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan

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http://dx.doi.org/10.1093/gbe/evw132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987104PMC
July 2016

No Distinction of Orthology/Paralogy between Human and Chimpanzee Rh Blood Group Genes.

Genome Biol Evol 2016 Feb 12;8(3):519-27. Epub 2016 Feb 12.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/gbe/evw022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824203PMC
February 2016

Unique characteristics of the Ainu population in Northern Japan.

J Hum Genet 2015 Oct 16;60(10):565-71. Epub 2015 Jul 16.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1038/jhg.2015.79DOI Listing
October 2015

Admixture patterns and genetic differentiation in negrito groups from West Malaysia estimated from genome-wide SNP data.

Hum Biol 2013 Feb-Jun;85(1-3):173-88

Department of Genetics, School of Life Science, Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan and Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://www.bioone.org/doi/abs/10.3378/027.085.0308
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http://dx.doi.org/10.3378/027.085.0308DOI Listing
April 2015

Whole-genome sequencing of six Mauritian Cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck.

Genome Biol Evol 2015 Mar 23;7(3):821-30. Epub 2015 Mar 23.

Laboratoire d'Immunogénétique Moléculaire (LIMT, EA3034), Faculté de Médecine Purpan, Université Paul Sabatier, Toulouse III, France

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evv033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322541PMC
March 2015

An integrative evolution theory of histo-blood group ABO and related genes.

Sci Rep 2014 Oct 13;4:6601. Epub 2014 Oct 13.

Laboratoire d'Immunogénétique Moléculaire (LIMT, EA3034), Faculté de Médecine Purpan, Université Paul Sabatier, (Université de Toulouse III), Toulouse, France.

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http://dx.doi.org/10.1038/srep06601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5377540PMC
October 2014

Heterogeneous tempo and mode of conserved noncoding sequence evolution among four mammalian orders.

Genome Biol Evol 2013 ;5(12):2330-43

Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima Japan.

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evt177DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879966PMC
August 2014

A hypervariable STR polymorphism in the CFI gene: southern origin of East Asian-specific group H alleles.

Leg Med (Tokyo) 2013 Sep 17;15(5):239-43. Epub 2013 May 17.

Division of Legal Medicine, Faculty of Medicine, Tottori University, Yonago 683-8503, Japan.

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http://dx.doi.org/10.1016/j.legalmed.2013.04.001DOI Listing
September 2013

Regional DNA methylation differences between humans and chimpanzees are associated with genetic changes, transcriptional divergence and disease genes.

J Hum Genet 2013 Jul 6;58(7):446-54. Epub 2013 Jun 6.

Division of Epigenomics and Development, Medical Institute of Bioregulation, and Epigenome Network Research Center, Kyushu University, Fukuoka, Japan.

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http://dx.doi.org/10.1038/jhg.2013.55DOI Listing
July 2013

Vertebrate paralogous conserved noncoding sequences may be related to gene expressions in brain.

Genome Biol Evol 2013 ;5(1):140-50

Department of Genetics, School of Life Science, Graduate University for Advanced Studies SOKENDAI, Mishima, Japan.

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evs128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3595034PMC
June 2013

The PNarec method for detection of ancient recombinations through phylogenetic network analysis.

Mol Phylogenet Evol 2013 Feb 25;66(2):507-14. Epub 2012 Sep 25.

Division of Population Genetics, National Institute of Genetics, Mishima 411-8540, Japan.

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https://linkinghub.elsevier.com/retrieve/pii/S10557903120037
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http://dx.doi.org/10.1016/j.ympev.2012.09.015DOI Listing
February 2013

Evolutionary history of continental southeast Asians: "early train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data.

Mol Biol Evol 2012 Nov 22;29(11):3513-27. Epub 2012 Jun 22.

Department of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.

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http://dx.doi.org/10.1093/molbev/mss169DOI Listing
November 2012

Identification and characterization of lineage-specific highly conserved noncoding sequences in Mammalian genomes.

Genome Biol Evol 2012 13;4(5):641-57. Epub 2012 Apr 13.

Department of Genetics, School of Life Science, Graduate University for Advanced Studies, Japan.

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http://dx.doi.org/10.1093/gbe/evs035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381673PMC
August 2012

The functional A allele was resurrected via recombination in the human ABO blood group gene.

Mol Biol Evol 2012 Jul 27;29(7):1791-6. Epub 2012 Jan 27.

Department of Biomolecular Functional Engineering, College of Engineering, Ibaraki University, Hitachi, Japan.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/mss021DOI Listing
July 2012

Evolutionary patterns of recently emerged animal duplogs.

Genome Biol Evol 2011 22;3:1119-35. Epub 2011 Aug 22.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/gbe/evr074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194840PMC
February 2012

Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1.

Mol Biol Evol 2011 Nov 22;28(11):3005-7. Epub 2011 Sep 22.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/molbev/msr231DOI Listing
November 2011

Exploration for functional nucleotide sequence candidates within coding regions of mammalian genes.

DNA Res 2011 Jun 17;18(3):177-87. Epub 2011 May 17.

Department of Genetics, School of Life Science, Graduate University for Advanced Studies, Mishima 411-8540, Japan.

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https://academic.oup.com/dnaresearch/article-lookup/doi/10.1
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http://dx.doi.org/10.1093/dnares/dsr010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111233PMC
June 2011

A commentary on the Soliga, an isolated tribe from Southern India: genetic diversity and phylogenetic affinities.

Authors:
Naruya Saitou

J Hum Genet 2011 Apr 10;56(4):257. Epub 2011 Feb 10.

Division of Population Genetics, National Institute of Genetics, 1111 Yata, Mishima, 411-8540, Japan.

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http://dx.doi.org/10.1038/jhg.2011.8DOI Listing
April 2011

A hypervariable STR polymorphism in the complement factor I (CFI) gene: Asian-specific alleles.

Int J Legal Med 2011 Jan 20;125(1):121-5. Epub 2009 Aug 20.

Division of Legal Medicine, Faculty of Medicine, Tottori University, Yonago, 683-8503, Japan.

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http://dx.doi.org/10.1007/s00414-009-0369-0DOI Listing
January 2011

Evolution of conserved non-coding sequences within the vertebrate Hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis.

J Mol Evol 2010 Dec 28;71(5-6):427-36. Epub 2010 Oct 28.

Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima, 411-8540, Japan.

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http://dx.doi.org/10.1007/s00239-010-9396-1DOI Listing
December 2010

Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method.

Mol Biol Evol 2010 Sep 29;27(9):2152-71. Epub 2010 Apr 29.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/molbev/msq109DOI Listing
September 2010

A Japanese-specific allele in the GALNT11 gene.

Leg Med (Tokyo) 2010 Jul;12(4):208-11

Division of Legal Medicine, Faculty of Medicine, Tottori University, Yonago, Japan.

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http://dx.doi.org/10.1016/j.legalmed.2010.04.001DOI Listing
July 2010

Evolution of two Rh blood group-related genes of the amphioxus species Branchiostoma floridae.

Genes Genet Syst 2010 Apr;85(2):121-7

Department of Biomolecular Functional Engineering, College of Engineering, Ibaraki University.

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http://dx.doi.org/10.1266/ggs.85.121DOI Listing
April 2010

Study of cynomolgus monkey (Macaca fascicularis) DRA polymorphism in four populations.

Immunogenetics 2010 Mar 22;62(3):123-36. Epub 2010 Jan 22.

Laboratoire d'immunogénétique moléculaire, EA3034, Faculté de Médecine Purpan, Toulouse 3, France.

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http://dx.doi.org/10.1007/s00251-009-0421-8DOI Listing
March 2010

MISHIMA--a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.

BMC Bioinformatics 2010 Mar 18;11:142. Epub 2010 Mar 18.

Division of Population Genetics, National Institute of Genetics 1111 Yata, Mishima, 411-8540, Japan.

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http://www.biomedcentral.com/1471-2105/11/142
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http://dx.doi.org/10.1186/1471-2105-11-142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848238PMC
March 2010

HERC1 polymorphisms: population-specific variations in haplotype composition.

Cell Biochem Funct 2009 Aug;27(6):402-5

Division of Legal Medicine, Faculty of Medicine, Tottori University, Yonago, Japan.

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http://dx.doi.org/10.1002/cbf.1582DOI Listing
August 2009

Skewed matrilineal genetic composition in a small wild chimpanzee community.

Folia Primatol (Basel) 2009 11;80(1):19-32. Epub 2008 Dec 11.

Primate Research Institute, Kyoto University, Inuyma, Japan.

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https://www.karger.com/Article/FullText/181187
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http://dx.doi.org/10.1159/000181187DOI Listing
July 2009

MHC class II DR classification based on antigen-binding groove natural selection.

Biochem Biophys Res Commun 2009 Jul 5;385(2):137-42. Epub 2009 May 5.

Viral Infectious Diseases Unit, RIKEN, Wako, Saitama, Japan.

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http://www.saitou-naruya-laboratory.org/assets/files/pdf/Tak
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http://linkinghub.elsevier.com/retrieve/pii/S0006291X0900862
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http://dx.doi.org/10.1016/j.bbrc.2009.04.142DOI Listing
July 2009

Relic of ancient recombinations in gibbon ABO blood group genes deciphered through phylogenetic network analysis.

Mol Phylogenet Evol 2009 Jun 17;51(3):465-71. Epub 2009 Mar 17.

Division of Population Genetics, National Institute of Genetics, Yata, Mishima, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S105579030900048
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http://dx.doi.org/10.1016/j.ympev.2009.02.023DOI Listing
June 2009

Estimation of bacterial species phylogeny through oligonucleotide frequency distances.

Genomics 2009 Jun 12;93(6):525-33. Epub 2009 Feb 12.

Department of Genetics, School of Life Science, Graduate University for Advanced Studies, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1016/j.ygeno.2009.01.009DOI Listing
June 2009

Caenorhabditis elegans galectins LEC-1-LEC-11: structural features and sugar-binding properties.

Biochim Biophys Acta 2008 Oct 14;1780(10):1131-42. Epub 2008 Jul 14.

Department of Biological Chemistry, Teikyo University School of Pharmaceutical Sciences, 1091-1 Suarashi, Sagamiko, Sagamihara, Kanagawa 229-0195, Japan.

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http://dx.doi.org/10.1016/j.bbagen.2008.07.003DOI Listing
October 2008

Evolutionary dynamics of the human ABO gene.

Hum Genet 2008 Sep 16;124(2):123-35. Epub 2008 Jul 16.

Unitat de Biologia Evolutiva, Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Doctor Aiguader, 80, 08003, Barcelona, Catalonia, Spain.

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http://link.springer.com/10.1007/s00439-008-0530-8
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http://dx.doi.org/10.1007/s00439-008-0530-8DOI Listing
September 2008

Mitochondrial DNA sequence phylogeny of 4 populations of the widely distributed cynomolgus macaque (Macaca fascicularis fascicularis).

J Hered 2008 May-Jun;99(3):254-64. Epub 2008 Mar 11.

Laboratoire d'immunogénétique moléculaire, Université Paul Sabatier, Toulouse, France.

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http://dx.doi.org/10.1093/jhered/esn003DOI Listing
May 2008

Possible involvement of SINEs in mammalian-specific brain formation.

Proc Natl Acad Sci U S A 2008 Mar 11;105(11):4220-5. Epub 2008 Mar 11.

Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259-B-21 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8501, Japan.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0709398105
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http://dx.doi.org/10.1073/pnas.0709398105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2393765PMC
March 2008

Mosaic genealogy of the Mus musculus genome revealed by 21 nuclear genes from its three subspecies.

Genes Genet Syst 2008 Feb;83(1):77-88

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1266/ggs.83.77DOI Listing
February 2008

Conservation and diversification of Msx protein in metazoan evolution.

Mol Biol Evol 2008 Jan 16;25(1):69-82. Epub 2007 Oct 16.

Laboratory for Comparative Neurogenesis, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msm228DOI Listing
January 2008

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Authors:
Chisato Yamasaki Katsuhiko Murakami Yasuyuki Fujii Yoshiharu Sato Erimi Harada Jun-ichi Takeda Takayuki Taniya Ryuichi Sakate Shingo Kikugawa Makoto Shimada Motohiko Tanino Kanako O Koyanagi Roberto A Barrero Craig Gough Hong-Woo Chun Takuya Habara Hideki Hanaoka Yosuke Hayakawa Phillip B Hilton Yayoi Kaneko Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Akihiro Matsuya Naoki Nagata Kensaku Nishikata Akiko Ogura Noda Shin Nurimoto Naomi Saichi Hiroaki Sakai Ryoko Sanbonmatsu Rie Shiba Mami Suzuki Kazuhiko Takabayashi Aiko Takahashi Takuro Tamura Masayuki Tanaka Susumu Tanaka Fusano Todokoro Kaori Yamaguchi Naoyuki Yamamoto Toshihisa Okido Jun Mashima Aki Hashizume Lihua Jin Kyung-Bum Lee Yi-Chueh Lin Asami Nozaki Katsunaga Sakai Masahito Tada Satoru Miyazaki Takashi Makino Hajime Ohyanagi Naoki Osato Nobuhiko Tanaka Yoshiyuki Suzuki Kazuho Ikeo Naruya Saitou Hideaki Sugawara Claire O'Donovan Tamara Kulikova Eleanor Whitfield Brian Halligan Mary Shimoyama Simon Twigger Kei Yura Kouichi Kimura Tomohiro Yasuda Tetsuo Nishikawa Yutaka Akiyama Chie Motono Yuri Mukai Hideki Nagasaki Makiko Suwa Paul Horton Reiko Kikuno Osamu Ohara Doron Lancet Eric Eveno Esther Graudens Sandrine Imbeaud Marie Anne Debily Yoshihide Hayashizaki Clara Amid Michael Han Andreas Osanger Toshinori Endo Michael A Thomas Mika Hirakawa Wojciech Makalowski Mitsuteru Nakao Nam-Soon Kim Hyang-Sook Yoo Sandro J De Souza Maria de Fatima Bonaldo Yoshihito Niimura Vladimir Kuryshev Ingo Schupp Stefan Wiemann Matthew Bellgard Masafumi Shionyu Libin Jia Danielle Thierry-Mieg Jean Thierry-Mieg Lukas Wagner Qinghua Zhang Mitiko Go Shinsei Minoshima Masafumi Ohtsubo Kousuke Hanada Peter Tonellato Takao Isogai Ji Zhang Boris Lenhard Sangsoo Kim Zhu Chen Ursula Hinz Anne Estreicher Kenta Nakai Izabela Makalowska Winston Hide Nicola Tiffin Laurens Wilming Ranajit Chakraborty Marcelo Bento Soares Maria Luisa Chiusano Yutaka Suzuki Charles Auffray Yumi Yamaguchi-Kabata Takeshi Itoh Teruyoshi Hishiki Satoshi Fukuchi Ken Nishikawa Sumio Sugano Nobuo Nomura Yoshio Tateno Tadashi Imanishi Takashi Gojobori

Nucleic Acids Res 2008 Jan 18;36(Database issue):D793-9. Epub 2007 Dec 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Japan.

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http://dx.doi.org/10.1093/nar/gkm999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238988PMC
January 2008

OCA2 481Thr, a hypofunctional allele in pigmentation, is characteristic of northeastern Asian populations.

J Hum Genet 2007 14;52(8):690-3. Epub 2007 Jun 14.

Division of Legal Medicine, Faculty of Medicine, Tottori University, Yonago 683-8503, Japan.

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http://dx.doi.org/10.1007/s10038-007-0167-9DOI Listing
September 2007

Tempo and mode of evolution of the Rh blood group genes before and after gene duplication.

Immunogenetics 2007 May 3;59(5):427-31. Epub 2007 Mar 3.

Department of Experimental and Forensic Pathology, Yamagata University School of Medicine, 2-2-2 Iidanishi, Yamagata, 990-9585, Japan.

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http://link.springer.com/10.1007/s00251-007-0204-z
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http://dx.doi.org/10.1007/s00251-007-0204-zDOI Listing
May 2007

Origin and evolution of gene for prolactin-induced protein.

Gene 2006 Nov 28;383:64-70. Epub 2006 Jul 28.

Department of Experimental and Forensic Pathology, Yamagata University School of Medicine, 2-2-2 Iidanishi, Yamagata 990-9585, Japan.

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http://dx.doi.org/10.1016/j.gene.2006.07.014DOI Listing
November 2006

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Genome-wide search of gene conversions in duplicated genes of mouse and rat.

Mol Biol Evol 2006 May 11;23(5):927-40. Epub 2006 Jan 11.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/molbev/msj093DOI Listing
May 2006

Human Endogenous Retrovirus (HERV)-R family in primates: Chromosomal location, gene expression, and evolution.

Gene 2006 Mar 27;370:34-42. Epub 2006 Jan 27.

Division of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.

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http://dx.doi.org/10.1016/j.gene.2005.11.008DOI Listing
March 2006

Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci.

Hum Genet 2006 Feb 29;118(6):695-707. Epub 2005 Nov 29.

Department of Legal Medicine and Bioethics, Graduate School of Medicine, Nagoya University, Nagoya, Japan.

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http://dx.doi.org/10.1007/s00439-005-0106-9DOI Listing
February 2006

[Human viewed from genome as a primate species].

Tanpakushitsu Kakusan Koso 2005 Dec;50(16 Suppl):2078-82

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December 2005

Evolutionary conservation of 5' upstream sequence of nine genes between human and great apes.

Genes Genet Syst 2005 Jun;80(3):225-32

Division of Population Genetics, National Institute of Genetics Mishima, Japan.

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http://dx.doi.org/10.1266/ggs.80.225DOI Listing
June 2005

Mitochondrial DNA genealogy of chimpanzees in the Nimba mountains and Bossou, West Africa.

Am J Primatol 2004 Nov;64(3):261-75

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://doi.wiley.com/10.1002/ajp.20077
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http://dx.doi.org/10.1002/ajp.20077DOI Listing
November 2004

Polymorphisms in the trace amine receptor 4 (TRAR4) gene on chromosome 6q23.2 are associated with susceptibility to schizophrenia.

Am J Hum Genet 2004 Oct 24;75(4):624-38. Epub 2004 Aug 24.

Center for Psychiatric Genetics, Department of Psychiatry and Behavioral Sciences, Evanston Northwestern Healthcare and Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.

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http://dx.doi.org/10.1086/424887DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182049PMC
October 2004

Comparative genetics of functional trinucleotide tandem repeats in humans and apes.

J Mol Evol 2004 Sep;59(3):329-39

Unitat de Biologia Evolutiva, Facultat de Ciències de la Salut i de la Vida, Universitat Pompeu Fabra, Barcelona, Spain.

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September 2004

Phylogenetic analysis of proteins associated in the four major energy metabolism systems: photosynthesis, aerobic respiration, denitrification, and sulfur respiration.

J Mol Evol 2004 Aug;59(2):158-76

Division of Population Genetics, National Institute of Genetics, and Department of Genetics, School of Life Sciences, Graduate University for Advanced Studies, Mishima, Japan.

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http://dx.doi.org/10.1007/s00239-004-2610-2DOI Listing
August 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

Human-specific amino acid changes found in 103 protein-coding genes.

Mol Biol Evol 2004 May 10;21(5):936-44. Epub 2004 Mar 10.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/molbev/msh100DOI Listing
May 2004

Evolution of the O alleles of the human ABO blood group gene.

Transfusion 2004 May;44(5):707-15

Laboratory of Molecular Immunology, Paul Sabatier University, Rangueil Hospital, 31403 Toulouse Cedex 4, France.

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http://dx.doi.org/10.1111/j.1537-2995.2004.03346.xDOI Listing
May 2004

Genetic variation versus recombination rate in a structured population of mice.

Mol Biol Evol 2004 Feb 5;21(2):404-9. Epub 2003 Dec 5.

Division of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/molbev/msh030DOI Listing
February 2004

Lineage-specific homogenization of the polyubiquitin gene among human and great apes.

J Mol Evol 2003 Dec;57(6):737-44

Division of Genetic Diagnosis, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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December 2003

Construction of a gorilla fosmid library and its PCR screening system.

Genomics 2003 Nov;82(5):571-4

Division of Population Genetics, National Institute of Genetics, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1016/s0888-7543(03)00174-5DOI Listing
November 2003

Sequence polymorphisms of the mitochondrial DNA control region and phylogenetic analysis of mtDNA lineages in the Japanese population.

Int J Legal Med 2003 Aug 5;117(4):218-25. Epub 2003 Jul 5.

Department of Forensic Odontology, Tokyo Dental College, 1-2-2 Masago Mihama-ku, 261-0011, Chiba City, Japan.

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http://link.springer.com/10.1007/s00414-003-0379-2
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August 2003

Mitochondrial DNA polymorphisms in nine aboriginal groups of Taiwan: implications for the population history of aboriginal Taiwanese.

Hum Genet 2003 Jul 10;113(1):24-33. Epub 2003 Apr 10.

Department of Biosystems Science, Graduate University for Advanced Studies (Sokendai), 240-0193, Hayama, Kanagawa, Japan.

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July 2003

Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor.

Hum Mol Genet 2003 Feb;12(3):205-16

Schizophrenia Genetics Research Program, Department of Psychiatry, The University of Chicago, Jules F. Knapp Medical Research Center, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1093/hmg/ddg055DOI Listing
February 2003

Evolution of the cystatin B gene: implications for the origin of its variable dodecamer tandem repeat in humans.

Genomics 2003 Jan;81(1):78-84

Department of Forensic Medicine, Yamagata University School of Medicine, Yamagata 990-9585, Japan.

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January 2003

Complete mitochondrial DNA sequence of a tadpole shrimp (Triops cancriformis) and analysis of museum samples.

Electrophoresis 2002 Dec;23(24):4080-4

Department of Forensic Medicine, Yamagata University School of Medicine, Yamagata, Japan.

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http://dx.doi.org/10.1002/elps.200290024DOI Listing
December 2002

Adaptive evolution of the IgA hinge region in primates.

Mol Biol Evol 2002 Jul;19(7):1093-9

Department of Biological Sciences, Graduate School of Science, University of Tokyo. Laboratory of Evolutionary Genetics, National Institute of Genetics, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1093/oxfordjournals.molbev.a004167DOI Listing
July 2002

[How to improve gene phylogeny analysis from sequence data].

Authors:
Saitou Naruya

Tanpakushitsu Kakusan Koso 2002 Jul;47(9):1240-2

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July 2002

Extreme mtDNA homogeneity in continental Asian populations.

Am J Phys Anthropol 2002 Jun;118(2):146-53

Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

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http://dx.doi.org/10.1002/ajpa.10056DOI Listing
June 2002

Evolutionary genomics: molecular evolution at the genomic scale.

Authors:
Saitou Naruya

Trends Genet 2002 May;18(5):239-40

Division of Population Genetics, National Institute of Genetics, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1016/s0168-9525(02)02675-6DOI Listing
May 2002

Helicobacter pylori in North and South America before Columbus.

FEBS Lett 2002 Apr;517(1-3):180-4

Department of Medicine, Veterans Affairs Medical Center and Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/s0014-5793(02)02617-0DOI Listing
April 2002